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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005702721.1 |
Preferred name | CENPA |
PFAMs | Histone |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K11253,ko:K11495 |
KEGG Pathway | ko05034,ko05202,ko05322,map05034,map05202,map05322 |
GOs | GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000939,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005727,GO:0005729,GO:0005737,GO:0005829,GO:0006276,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007163,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0019237,GO:0022402,GO:0022607,GO:0030010,GO:0030541,GO:0030543,GO:0031055,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031618,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033036,GO:0033365,GO:0034080,GO:0034502,GO:0034506,GO:0034508,GO:0034613,GO:0034622,GO:0034724,GO:0034728,GO:0040001,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043505,GO:0043565,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0046821,GO:0048285,GO:0051179,GO:0051234,GO:0051276,GO:0051293,GO:0051294,GO:0051301,GO:0051382,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0061638,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0070013,GO:0070727,GO:0070925,GO:0071103,GO:0071459,GO:0071824,GO:0071840,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901363,GO:1902850,GO:1903047,GO:1990837 |
Evalue | 1.61e-26 |
EggNOG OGs | COG2036@1|root,KOG1745@2759|Eukaryota |
Description | protein heterodimerization activity |
COG category | B |
BRITE | ko00000,ko00001,ko03036,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10458.t1.start1 | Ggra10458.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000108_pilon 359600..359602 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10458.t1.intron1 | Ggra10458.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000108_pilon 359804..361221 + |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10458.t1.stop1 | Ggra10458.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000108_pilon 361498..361500 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEA FVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEHRKDFVCPFNGCNRR FAKKYNMLRHLSASGVHRASPMAAAKMAGKRRASDRAKWSSMELDLAKFL AEQCRPGLVA* back to topspliced messenger RNA >Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000108_pilon:359600..361500+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGATTCGCAAGTACCAACGGTCCGTGAACCTGTTGATTCGAAGACT GCCGTTTGCTCGTTTGGTGAAGGAGATTACGCAGAAGTTTCACCACGACT TGCGCTGGCGCGTGGACGCGATTGAGGCGCTGCAGGTGTCTGCCGAAGCG TTTGTGGTGAATCTGATGGAAGATGCAAACTTGTGTGCCATCCATGGGAA GAGAACGTCGTCCAACAAGGGCAACCTGTCCAAGCACATTGCCACGCGGC ACGAGCACCGCAAGGATTTTGTGTGCCCGTTCAACGGGTGCAACAGAAGG TTTGCCAAGAAGTACAACATGCTGCGACATTTGTCGGCCAGCGGCGTGCA TCGCGCGTCGCCCATGGCCGCCGCCAAGATGGCCGGCAAGAGGAGGGCGT CTGATCGCGCAAAGTGGAGCTCCATGGAGCTGGATTTGGCAAAGTTTCTG GCGGAGCAATGTCGGCCTGGCTTGGTGGCATGA back to topprotein sequence of Ggra10458.t1 >Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEA FVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEHRKDFVCPFNGCNRR FAKKYNMLRHLSASGVHRASPMAAAKMAGKRRASDRAKWSSMELDLAKFL AEQCRPGLVA* back to topmRNA from alignment at tig00000108_pilon:359600..361500+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1901bp|location=Sequence derived from alignment at tig00000108_pilon:359600..361500+ (Gracilaria gracilis GNS1m male) ATGGAGATTCGCAAGTACCAACGGTCCGTGAACCTGTTGATTCGAAGACT
GCCGTTTGCTCGTTTGGTGAAGGAGATTACGCAGAAGTTTCACCACGACT
TGCGCTGGCGCGTGGACGCGATTGAGGCGCTGCAGGTGTCTGCCGAAGCG
TTTGTGGTGAATCTGATGGAAGATGCAAACTTGTGTGCCATCCATGGGAA
GAGAGTGACGATCATGCCTAGGGACATCCACCTCGCGCGACGAATCCGCG
GACTTAGCAATGACCCAGCCAACTATTTATGAAGGCAACGGCAGTGAGTG
GGCGGCGGCGGTGGGGTACAGCCGAGTAACTTTAGTTAGTAAggcggggg
ggggggggggggggggggagaggaggAGACAGGTGCGCGTTTGAGAGGCC
AATTTTGGGGCGAGTTGTGATTGGCGGCGTGTGATTGGCGGCGCAGCTTT
TGCACAGCATTGCAGAAACAGCGTTTGTATCTACAGTTAGGTTGAACATA
AAGTAACATGTGAGTGCGCGAGCGCGACGGCGGCTCTCTGCGCGCGCGCG
CGAGCAGCTGCAGCGACTCACGTGCGGCGCGCGCGCGTCGGTGGAACGCG
CGCGCGCGCGCGACATGATGTCGCGCGCTCAACGTGAACGATTGGCGCAC
GTGGAAGCGTGTTACACAAACAGCCGCGTCGGGGAATGGACGAACGCGCG
CGCACCAGCGCGCCACGAGCACACACACGCAccgccgccaccgccgccac
cgccgccgccgccgagtgccgcgcggcgcggcACGTAAGTAAAAAAAAAA
AGGGCGCGCCGCGCCCGACGGTGCGCGGCTGCACGAATGTGGCGCGCGCC
AGCGCTAGCGCCAGCGCGCGCGCCGCGGCGCGCGTGGAAAGCGTGCCACG
CCAGTGTGGGCGCGCGGCGCAGTGCGCGCACGCACGGCGCGTGCGGAAGA
GGAACTAGCGCGCCTGCTTACGTGCGCCAATCAGCGTGCGCGTGCGCGCC
GCGTGCGCGCGGACAGCACGCTTTCCACCCACAGCGCTTGCTCAGCGATG
GTGCTCTCGCTCTTAAGCACGCCATGCGCGCCCCATTTTGTGCGTTGCGc
tctctccctctcgcactcactcactcCCCTCCCCCGCCTCACCGCCTCAT
CCCCGTCTaccgccgctaccaccacacccccccccttcctcacccccacc
gtctaccgccgctaccaccaccaccacccccccgtctaccgccgccacca
cTTGTCCTCCTCCTCCTCCTCCTTGTTGTTCACCGCTTCCGTTCTCCACA
CACGCCGCTCCCCATCCGGCTGCAccaccccccccccccccccccccctc
cccGAATGACTTCCATGTGGCTCCATCACCAGCTGGCCACGCGCGTGCTG
CCCGGCGCGGCGGCGGCACCGTTCCTGCTACGCGCGCCGCTGACGCGCGA
GCCGCTGTCGTACTACCCCGCGCTGTCGCgcggcggcgcggcggcggcgg
gcggcggcggcgtcggcgtcggcggcagcagcagcggcagcagcagcgca
tcggcgcgcagcaACGGCGCGAAAAGCGGCGCCAAGAAGTTGTTCCCGTG
CCCGTACCCCAACTGCTCGCAGACGTCGTCCAACAAGGGCAACCTGTCCA
AGCACATTGCCACGCGGCACGAGCACCGCAAGGATTTTGTGTGCCCGTTC
AACGGGTGCAACAGAAGGTTTGCCAAGAAGTACAACATGCTGCGACATTT
GTCGGCCAGCGGCGTGCATCGCGCGTCGCCCATGGCCGCCGCCAAGATGG
CCGGCAAGAGGAGGGCGTCTGATCGCGCAAAGTGGAGCTCCATGGAGCTG
GATTTGGCAAAGTTTCTGGCGGAGCAATGTCGGCCTGGCTTGGTGGCATG
A back to topCoding sequence (CDS) from alignment at tig00000108_pilon:359600..361500+ >Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000108_pilon:359600..361500+ (Gracilaria gracilis GNS1m male) ATGGAGATTCGCAAGTACCAACGGTCCGTGAACCTGTTGATTCGAAGACT GCCGTTTGCTCGTTTGGTGAAGGAGATTACGCAGAAGTTTCACCACGACT TGCGCTGGCGCGTGGACGCGATTGAGGCGCTGCAGGTGTCTGCCGAAGCG TTTGTGGTGAATCTGATGGAAGATGCAAACTTGTGTGCCATCCATGGGAA GAGAACGTCGTCCAACAAGGGCAACCTGTCCAAGCACATTGCCACGCGGC ACGAGCACCGCAAGGATTTTGTGTGCCCGTTCAACGGGTGCAACAGAAGG TTTGCCAAGAAGTACAACATGCTGCGACATTTGTCGGCCAGCGGCGTGCA TCGCGCGTCGCCCATGGCCGCCGCCAAGATGGCCGGCAAGAGGAGGGCGT CTGATCGCGCAAAGTGGAGCTCCATGGAGCTGGATTTGGCAAAGTTTCTG GCGGAGCAATGTCGGCCTGGCTTGGTGGCATGA back to top
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