Ggra10418.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10418.t1
Unique NameGgra10418.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:270045..271292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709124.1
Preferred nameMETTL16
PFAMsMethyltransf_10
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00335
KEGG koko:K06970,ko:K11393,ko:K11853,ko:K13119
KEGG ReactionR07232
GOsGO:0000154,GO:0000226,GO:0001510,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008174,GO:0008649,GO:0008757,GO:0008988,GO:0009056,GO:0009057,GO:0009451,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016422,GO:0016433,GO:0016556,GO:0016740,GO:0016741,GO:0017069,GO:0017070,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022613,GO:0030629,GO:0031023,GO:0031167,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035613,GO:0040025,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043484,GO:0043487,GO:0043488,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048569,GO:0048731,GO:0048856,GO:0050684,GO:0050779,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0052907,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070475,GO:0071704,GO:0071840,GO:0080009,GO:0080090,GO:0090304,GO:0097159,GO:0120048,GO:0120049,GO:0140098,GO:0140102,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903311,GO:1903313,GO:2000112,GO:2000113
Evalue1.14e-44
EggNOG OGsCOG3129@1|root,KOG2912@2759|Eukaryota
EC2.1.1.181,3.4.19.12
Description23S rRNA (adenine(1618)-N(6))-methyltransferase activity
COG categoryJ
BRITEko00000,ko01000,ko01002,ko03009,ko03041,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10418Ggra10418Gracilaria gracilis GNS1m malegenetig00000108_pilon 270045..271292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10418.t1.stop1Ggra10418.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 270045..270047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10418.t1.CDS1Ggra10418.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 270045..271292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10418.t1.exon1Ggra10418.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 270045..271292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10418.t1.start1Ggra10418.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 271290..271292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10418.t1Ggra10418.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 270045..271292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10418.t1 ID=Ggra10418.t1|Name=Ggra10418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp
MKRTPVQKESKAKKRAKSFKADNCILDAPCYDFEPLIEADEHLAKFTITV
NGQRTIDFTSREATYCLTRRILKHHFEIEFSLPPGHLVPTIPNRVQYLKW
AAGLLPEEYKDRNVVVLDIGTGPSCIYPLLGVRLFPQWEFIATDIDKEAV
ESARHNCVVNELDKITILKTESEGNFFCDRVRNLSPLLTVCNPPFHARRH
DGDDPPGTESQLLTDGGEFSFLCKLAEESVRQDSVMWFTSLIGCKEDLPK
VVSFLRSPRIRARIVKSAELCPGGRTTRWAVAWSFGEQSTKVSHKTDTAS
KWRYEVIISPGRKFGNQLEERDIEGVVRLSMCSMEWCFSEQTQRSSKCTY
RGKEGSMYESCELETFVARQHNSFDFVVLIKVQHKGQLQCVHFKEVCVTL
EEKILTFLRQLESSP*
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spliced messenger RNA

>Ggra10418.t1 ID=Ggra10418.t1|Name=Ggra10418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000108_pilon:270045..271292- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGAACCCCGGTACAGAAGGAAAGCAAGGCGAAGAAACGAGCAAA
GTCGTTCAAAGCTGATAACTGCATTCTCGATGCCCCTTGCTACGACTTTG
AACCCTTAATTGAAGCGGACGAACACCTTGCAAAATTTACGATCACCGTC
AATGGACAACGCACCATCGACTTTACGTCTCGTGAGGCAACTTATTGTCT
AACCCGCAGGATACTTAAGCACCATTTTGAAATTGAGTTCTCTCTCCCAC
CTGGACATCTTGTGCCCACCATCCCGAATAGAGTTCAGTATCTCAAGTGG
GCGGCTGGTTTGCTACCGGAAGAATACAAAGATCGAAACGTTGTTGTTCT
GGACATTGGAACTGGACCGTCCTGTATATACCCCTTACTTGGGGTACGTC
TGTTTCCCCAATGGGAGTTCATTGCTACCGATATTGACAAAGAAGCAGTT
GAGAGTGCAAGACATAATTGCGTAGTGAACGAGCTAGACAAGATAACGAT
CCTGAAAACCGAGAGCGAAGGCAATTTTTTCTGCGATCGAGTTCGTAACC
TATCCCCACTACTAACTGTCTGCAATCCTCCTTTCCATGCACGCCGCCAT
GATGGGGACGATCCGCCTGGAACAGAGTCACAACTTCTAACCGACGGCGG
CGAATTCAGTTTCTTGTGCAAACTTGCGGAAGAGTCGGTTCGTCAAGACA
GCGTGATGTGGTTCACGAGCTTGATTGGCTGCAAAGAAGACCTGCCCAAA
GTAGTATCGTTTCTTCGTTCCCCTCGAATAAGGGCAAGAATTGTCAAGTC
CGCAGAGCTTTGTCCTGGAGGTCGGACTACCCGGTGGGCTGTGGCATGGT
CTTTCGGAGAACAGAGTACCAAAGTGAGTCATAAAACAGACACAGCTTCC
AAATGGAGATATGAGGTCATAATCAGTCCGGGAAGGAAATTTGGAAACCA
GTTAGAAGAGCGCGACATTGAAGGCGTGGTACGCTTGTCAATGTGCTCAA
TGGAATGGTGTTTCTCCGAACAGACACAACGGAGTTCAAAGTGCACTTAT
CGCGGAAAAGAGGGCAGCATGTACGAGTCATGCGAACTGGAGACATTCGT
CGCTCGGCAACATAACTCATTCGACTTTGTAGTGTTGATAAAAGTGCAGC
ATAAGGGACAGCTACAATGCGTGCATTTCAAAGAAGTGTGTGTAACACTT
GAGGAAAAGATATTAACGTTTCTTAGACAGTTAGAATCAAGTCCATAA
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protein sequence of Ggra10418.t1

>Ggra10418.t1 ID=Ggra10418.t1|Name=Ggra10418.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=416bp
MKRTPVQKESKAKKRAKSFKADNCILDAPCYDFEPLIEADEHLAKFTITV
NGQRTIDFTSREATYCLTRRILKHHFEIEFSLPPGHLVPTIPNRVQYLKW
AAGLLPEEYKDRNVVVLDIGTGPSCIYPLLGVRLFPQWEFIATDIDKEAV
ESARHNCVVNELDKITILKTESEGNFFCDRVRNLSPLLTVCNPPFHARRH
DGDDPPGTESQLLTDGGEFSFLCKLAEESVRQDSVMWFTSLIGCKEDLPK
VVSFLRSPRIRARIVKSAELCPGGRTTRWAVAWSFGEQSTKVSHKTDTAS
KWRYEVIISPGRKFGNQLEERDIEGVVRLSMCSMEWCFSEQTQRSSKCTY
RGKEGSMYESCELETFVARQHNSFDFVVLIKVQHKGQLQCVHFKEVCVTL
EEKILTFLRQLESSP*
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mRNA from alignment at tig00000108_pilon:270045..271292-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10418.t1 ID=Ggra10418.t1|Name=Ggra10418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000108_pilon:270045..271292- (Gracilaria gracilis GNS1m male)
ATGAAAAGAACCCCGGTACAGAAGGAAAGCAAGGCGAAGAAACGAGCAAA
GTCGTTCAAAGCTGATAACTGCATTCTCGATGCCCCTTGCTACGACTTTG
AACCCTTAATTGAAGCGGACGAACACCTTGCAAAATTTACGATCACCGTC
AATGGACAACGCACCATCGACTTTACGTCTCGTGAGGCAACTTATTGTCT
AACCCGCAGGATACTTAAGCACCATTTTGAAATTGAGTTCTCTCTCCCAC
CTGGACATCTTGTGCCCACCATCCCGAATAGAGTTCAGTATCTCAAGTGG
GCGGCTGGTTTGCTACCGGAAGAATACAAAGATCGAAACGTTGTTGTTCT
GGACATTGGAACTGGACCGTCCTGTATATACCCCTTACTTGGGGTACGTC
TGTTTCCCCAATGGGAGTTCATTGCTACCGATATTGACAAAGAAGCAGTT
GAGAGTGCAAGACATAATTGCGTAGTGAACGAGCTAGACAAGATAACGAT
CCTGAAAACCGAGAGCGAAGGCAATTTTTTCTGCGATCGAGTTCGTAACC
TATCCCCACTACTAACTGTCTGCAATCCTCCTTTCCATGCACGCCGCCAT
GATGGGGACGATCCGCCTGGAACAGAGTCACAACTTCTAACCGACGGCGG
CGAATTCAGTTTCTTGTGCAAACTTGCGGAAGAGTCGGTTCGTCAAGACA
GCGTGATGTGGTTCACGAGCTTGATTGGCTGCAAAGAAGACCTGCCCAAA
GTAGTATCGTTTCTTCGTTCCCCTCGAATAAGGGCAAGAATTGTCAAGTC
CGCAGAGCTTTGTCCTGGAGGTCGGACTACCCGGTGGGCTGTGGCATGGT
CTTTCGGAGAACAGAGTACCAAAGTGAGTCATAAAACAGACACAGCTTCC
AAATGGAGATATGAGGTCATAATCAGTCCGGGAAGGAAATTTGGAAACCA
GTTAGAAGAGCGCGACATTGAAGGCGTGGTACGCTTGTCAATGTGCTCAA
TGGAATGGTGTTTCTCCGAACAGACACAACGGAGTTCAAAGTGCACTTAT
CGCGGAAAAGAGGGCAGCATGTACGAGTCATGCGAACTGGAGACATTCGT
CGCTCGGCAACATAACTCATTCGACTTTGTAGTGTTGATAAAAGTGCAGC
ATAAGGGACAGCTACAATGCGTGCATTTCAAAGAAGTGTGTGTAACACTT
GAGGAAAAGATATTAACGTTTCTTAGACAGTTAGAATCAAGTCCATAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:270045..271292-

>Ggra10418.t1 ID=Ggra10418.t1|Name=Ggra10418.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00000108_pilon:270045..271292- (Gracilaria gracilis GNS1m male)
ATGAAAAGAACCCCGGTACAGAAGGAAAGCAAGGCGAAGAAACGAGCAAA
GTCGTTCAAAGCTGATAACTGCATTCTCGATGCCCCTTGCTACGACTTTG
AACCCTTAATTGAAGCGGACGAACACCTTGCAAAATTTACGATCACCGTC
AATGGACAACGCACCATCGACTTTACGTCTCGTGAGGCAACTTATTGTCT
AACCCGCAGGATACTTAAGCACCATTTTGAAATTGAGTTCTCTCTCCCAC
CTGGACATCTTGTGCCCACCATCCCGAATAGAGTTCAGTATCTCAAGTGG
GCGGCTGGTTTGCTACCGGAAGAATACAAAGATCGAAACGTTGTTGTTCT
GGACATTGGAACTGGACCGTCCTGTATATACCCCTTACTTGGGGTACGTC
TGTTTCCCCAATGGGAGTTCATTGCTACCGATATTGACAAAGAAGCAGTT
GAGAGTGCAAGACATAATTGCGTAGTGAACGAGCTAGACAAGATAACGAT
CCTGAAAACCGAGAGCGAAGGCAATTTTTTCTGCGATCGAGTTCGTAACC
TATCCCCACTACTAACTGTCTGCAATCCTCCTTTCCATGCACGCCGCCAT
GATGGGGACGATCCGCCTGGAACAGAGTCACAACTTCTAACCGACGGCGG
CGAATTCAGTTTCTTGTGCAAACTTGCGGAAGAGTCGGTTCGTCAAGACA
GCGTGATGTGGTTCACGAGCTTGATTGGCTGCAAAGAAGACCTGCCCAAA
GTAGTATCGTTTCTTCGTTCCCCTCGAATAAGGGCAAGAATTGTCAAGTC
CGCAGAGCTTTGTCCTGGAGGTCGGACTACCCGGTGGGCTGTGGCATGGT
CTTTCGGAGAACAGAGTACCAAAGTGAGTCATAAAACAGACACAGCTTCC
AAATGGAGATATGAGGTCATAATCAGTCCGGGAAGGAAATTTGGAAACCA
GTTAGAAGAGCGCGACATTGAAGGCGTGGTACGCTTGTCAATGTGCTCAA
TGGAATGGTGTTTCTCCGAACAGACACAACGGAGTTCAAAGTGCACTTAT
CGCGGAAAAGAGGGCAGCATGTACGAGTCATGCGAACTGGAGACATTCGT
CGCTCGGCAACATAACTCATTCGACTTTGTAGTGTTGATAAAAGTGCAGC
ATAAGGGACAGCTACAATGCGTGCATTTCAAAGAAGTGTGTGTAACACTT
GAGGAAAAGATATTAACGTTTCTTAGACAGTTAGAATCAAGTCCATAA
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