Ggra9723.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9723.t1
Unique NameGgra9723.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000105_piloncontigtig00000105_pilon:181609..182386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9723Ggra9723Gracilaria gracilis GNS1m malegenetig00000105_pilon 181609..182386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9723.t1Ggra9723.t1Gracilaria gracilis GNS1m malepolypeptidetig00000105_pilon 181609..182386 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9723.t1.start1Ggra9723.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000105_pilon 181609..181611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9723.t1.CDS1Ggra9723.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000105_pilon 181609..181889 +
Ggra9723.t1.CDS2Ggra9723.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000105_pilon 182182..182386 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9723.t1.exon1Ggra9723.t1.exon1Gracilaria gracilis GNS1m maleexontig00000105_pilon 181609..181889 +
Ggra9723.t1.exon2Ggra9723.t1.exon2Gracilaria gracilis GNS1m maleexontig00000105_pilon 182182..182386 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9723.t1.intron1Ggra9723.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000105_pilon 181890..182181 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9723.t1.stop1Ggra9723.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000105_pilon 182384..182386 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9723.t1 ID=Ggra9723.t1|Name=Ggra9723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MAIAHILLFITVLLTTFVLSCASLPRFPRDAGIFIKPRRSPFVGGVYAMS
NNVTENTMVVYARRPDDTLQLLDGALKTGGRGAVFAPDAVFDPLQRRLSF
RPSGIPFSPDRRTLVVTNLFNGLNAIAAGGVREIFTYSVSATGLLSVVPV
ANVASTELGNS*
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spliced messenger RNA

>Ggra9723.t1 ID=Ggra9723.t1|Name=Ggra9723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000105_pilon:181609..182386+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATAGCTCATATCCTGCTGTTCATCACTGTGTTGCTCACCACTTT
CGTGCTTTCATGCGCATCCCTGCCACGCTTTCCCCGCGATGCGGGAATTT
TCATCAAACCACGCAGATCTCCCTTCGTGGGCGGAGTATACGCCATGTCC
AACAATGTCACTGAGAACACAATGGTGGTGTACGCCCGCCGACCTGACGA
CACCCTTCAGCTGCTGGATGGTGCGCTCAAGACGGGGGGAAGAGGCGCCG
TTTTCGCGCCCGACGCGGTGTTCGACCCGCTCCAGCGACGGCTCTCCTTC
CGTCCGTCGGGCATCCCGTTTTCGCCCGACCGTCGCACTCTGGTTGTCAC
CAACTTGTTCAACGGCCTCAATGCCATCGCCGCCGGCGGTGTGCGGGAAA
TCTTCACGTACAGCGTCAGTGCAACTGGCTTGCTCAGCGTGGTTCCAGTG
GCCAACGTCGCGTCGACGGAGCTGGGCAATTCATAA
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protein sequence of Ggra9723.t1

>Ggra9723.t1 ID=Ggra9723.t1|Name=Ggra9723.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MAIAHILLFITVLLTTFVLSCASLPRFPRDAGIFIKPRRSPFVGGVYAMS
NNVTENTMVVYARRPDDTLQLLDGALKTGGRGAVFAPDAVFDPLQRRLSF
RPSGIPFSPDRRTLVVTNLFNGLNAIAAGGVREIFTYSVSATGLLSVVPV
ANVASTELGNS*
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mRNA from alignment at tig00000105_pilon:181609..182386+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9723.t1 ID=Ggra9723.t1|Name=Ggra9723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=778bp|location=Sequence derived from alignment at tig00000105_pilon:181609..182386+ (Gracilaria gracilis GNS1m male)
ATGGCTATAGCTCATATCCTGCTGTTCATCACTGTGTTGCTCACCACTTT
CGTGCTTTCATGCGCATCCCTGCCACGCTTTCCCCGCGATGCGGGAATTT
TCATCAAACCACGCAGATCTCCCTTCGTGGGCGGAGTATACGCCATGTCC
AACAATGTCACTGAGAACACAATGGTGGTGTACGCCCGCCGACCTGACGA
CACCCTTCAGCTGCTGGATGGTGCGCTCAAGACGGGGGGAAGAGGCGCCG
TTTTCGCGCCCGACGCGGTGTTCGACCCGCTGTTCTCGGCCTTTTCCGTG
ATCATCACCGATGATaaccgattcgtactggccttcaacgcgggcagcag
ctctgtgtccgtgtttagagttctgccagacttctcgctcgctctcgtac
acgtgcagcccgttcccggcttcgggcccaacagcattgcaatccctaga
aacatcgtgtacgtcgccatcacggacgcagacggcgaattcgacagcgt
gttctcgcaggagggagCGCTGTTCGGGTTTGCGTTGTCCTCTTCCCGGA
AGACTTATCCTGATTCCACGCAGCCAGCGACGGCTCTCCTTCCGTCCGTC
GGGCATCCCGTTTTCGCCCGACCGTCGCACTCTGGTTGTCACCAACTTGT
TCAACGGCCTCAATGCCATCGCCGCCGGCGGTGTGCGGGAAATCTTCACG
TACAGCGTCAGTGCAACTGGCTTGCTCAGCGTGGTTCCAGTGGCCAACGT
CGCGTCGACGGAGCTGGGCAATTCATAA
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Coding sequence (CDS) from alignment at tig00000105_pilon:181609..182386+

>Ggra9723.t1 ID=Ggra9723.t1|Name=Ggra9723.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000105_pilon:181609..182386+ (Gracilaria gracilis GNS1m male)
ATGGCTATAGCTCATATCCTGCTGTTCATCACTGTGTTGCTCACCACTTT
CGTGCTTTCATGCGCATCCCTGCCACGCTTTCCCCGCGATGCGGGAATTT
TCATCAAACCACGCAGATCTCCCTTCGTGGGCGGAGTATACGCCATGTCC
AACAATGTCACTGAGAACACAATGGTGGTGTACGCCCGCCGACCTGACGA
CACCCTTCAGCTGCTGGATGGTGCGCTCAAGACGGGGGGAAGAGGCGCCG
TTTTCGCGCCCGACGCGGTGTTCGACCCGCTCCAGCGACGGCTCTCCTTC
CGTCCGTCGGGCATCCCGTTTTCGCCCGACCGTCGCACTCTGGTTGTCAC
CAACTTGTTCAACGGCCTCAATGCCATCGCCGCCGGCGGTGTGCGGGAAA
TCTTCACGTACAGCGTCAGTGCAACTGGCTTGCTCAGCGTGGTTCCAGTG
GCCAACGTCGCGTCGACGGAGCTGGGCAATTCATAA
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