Ggra7513.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7513.t1
Unique NameGgra7513.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:248834..249628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G0Y5
PFAMsCreatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C,Pro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K03768
Evalue8.01e-19
EggNOG OGsCOG0652@1|root,KOG0880@2759|Eukaryota
EC3.4.11.9,5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7513Ggra7513Gracilaria gracilis GNS1m malegenetig00000102_pilon 248834..249628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7513.t1.stop1Ggra7513.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 248834..248836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7513.t1.CDS1Ggra7513.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 248834..249628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7513.t1.exon1Ggra7513.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 248834..249628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7513.t1.start1Ggra7513.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 249626..249628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7513.t1Ggra7513.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 248834..249628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7513.t1 ID=Ggra7513.t1|Name=Ggra7513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MRRVPAATPAFAPAPARAPIAPMRAASAAACADAPRARHTRRRFVQLLAA
APLAPLAAVAAAAAPAPALSPRAAETADADGAVGAVGDVDALVSEPAITQ
RVELRLELPDGSVRSLTLALYGELAPATTANFAALVAARAYDDTRVYRVL
PQLTVQLGDTLRNGGASGAAATADGRLRAENWRLSHSAPGVLSMVVAHGY
VDSRFFVTTRRGDSRYLDGRYVAFGRVQRGLDALFELERAVAAEQRSLVR
RPVRARIVTARLLQ*
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spliced messenger RNA

>Ggra7513.t1 ID=Ggra7513.t1|Name=Ggra7513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000102_pilon:248834..249628- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGAGTGCCCGCTGCCACGCCGGCGTTCGCGCCCGCGCCCGCGCG
CGCGCCCATCGCGCCGATGCGCGCTGCGAGCGCGGCCGCCTGCGCCGATG
CGCCGCGCGCGCGGCACACCCGCCGCCGCTTCGTGCAGCTGCTAGCGGCC
GCGCCGCTGGCGCCGCTGGCCGCCGTCGCCGCGGCGGCGGCACCAGCGCC
AGCGCTCTCGCCGCGCGCGGCGGAAACGGCGGACGCAGACGGCGCAGTGG
GCGCAGTGGGCGACGTGGACGCGTTGGTATCCGAGCCGGCCATCACGCAG
CGCGTGGAGCTGCGGCTCGAGCTGCCGGACGGCAGCGTGCGCTCGCTCAC
GCTGGCGCTGTACGGCGAGCTAGCGCCGGCCACGACGGCCAACTTCGCGG
CGCTAGTAGCGGCGCGCGCGTACGACGACACGCGCGTGTACCGCGTGCTG
CCGCAGCTCACCGTGCAGCTGGGCGACACGCTGCGCAACGGCGGCGCGTC
GGGCGCGGCCGCCACGGCGGACGGCCGTCTGCGCGCGGAGAACTGGAGAC
TGTCGCACTCGGCGCCCGGCGTGCTGTCCATGGTGGTTGCGCACGGCTAC
GTGGATAGCCGCTTCTTTGTTACTACGCGACGCGGCGATAGCCGCTACTT
GGATGGCCGATACGTCGCCTTTGGCCGCGTCCAACGAGGGCTCGACGCGC
TGTTCGAGCTGGAGCGCGCCGTGGCTGCCGAGCAGCGCTCGCTGGTGCGC
CGCCCTGTGCGCGCGCGCATCGTCACCGCGCGCTTGCTGCAGTGA
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protein sequence of Ggra7513.t1

>Ggra7513.t1 ID=Ggra7513.t1|Name=Ggra7513.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MRRVPAATPAFAPAPARAPIAPMRAASAAACADAPRARHTRRRFVQLLAA
APLAPLAAVAAAAAPAPALSPRAAETADADGAVGAVGDVDALVSEPAITQ
RVELRLELPDGSVRSLTLALYGELAPATTANFAALVAARAYDDTRVYRVL
PQLTVQLGDTLRNGGASGAAATADGRLRAENWRLSHSAPGVLSMVVAHGY
VDSRFFVTTRRGDSRYLDGRYVAFGRVQRGLDALFELERAVAAEQRSLVR
RPVRARIVTARLLQ*
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mRNA from alignment at tig00000102_pilon:248834..249628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7513.t1 ID=Ggra7513.t1|Name=Ggra7513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000102_pilon:248834..249628- (Gracilaria gracilis GNS1m male)
ATGCGCCGAGTGCCCGCTGCCACGCCGGCGTTCGCGCCCGCGCCCGCGCG
CGCGCCCATCGCGCCGATGCGCGCTGCGAGCGCGGCCGCCTGCGCCGATG
CGCCGCGCGCGCGGCACACCCGCCGCCGCTTCGTGCAGCTGCTAGCGGCC
GCGCCGCTGGCGCCGCTGGCCGCCGTCGCCGCGGCGGCGGCACCAGCGCC
AGCGCTCTCGCCGCGCGCGGCGGAAACGGCGGACGCAGACGGCGCAGTGG
GCGCAGTGGGCGACGTGGACGCGTTGGTATCCGAGCCGGCCATCACGCAG
CGCGTGGAGCTGCGGCTCGAGCTGCCGGACGGCAGCGTGCGCTCGCTCAC
GCTGGCGCTGTACGGCGAGCTAGCGCCGGCCACGACGGCCAACTTCGCGG
CGCTAGTAGCGGCGCGCGCGTACGACGACACGCGCGTGTACCGCGTGCTG
CCGCAGCTCACCGTGCAGCTGGGCGACACGCTGCGCAACGGCGGCGCGTC
GGGCGCGGCCGCCACGGCGGACGGCCGTCTGCGCGCGGAGAACTGGAGAC
TGTCGCACTCGGCGCCCGGCGTGCTGTCCATGGTGGTTGCGCACGGCTAC
GTGGATAGCCGCTTCTTTGTTACTACGCGACGCGGCGATAGCCGCTACTT
GGATGGCCGATACGTCGCCTTTGGCCGCGTCCAACGAGGGCTCGACGCGC
TGTTCGAGCTGGAGCGCGCCGTGGCTGCCGAGCAGCGCTCGCTGGTGCGC
CGCCCTGTGCGCGCGCGCATCGTCACCGCGCGCTTGCTGCAGTGA
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Coding sequence (CDS) from alignment at tig00000102_pilon:248834..249628-

>Ggra7513.t1 ID=Ggra7513.t1|Name=Ggra7513.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000102_pilon:248834..249628- (Gracilaria gracilis GNS1m male)
ATGCGCCGAGTGCCCGCTGCCACGCCGGCGTTCGCGCCCGCGCCCGCGCG
CGCGCCCATCGCGCCGATGCGCGCTGCGAGCGCGGCCGCCTGCGCCGATG
CGCCGCGCGCGCGGCACACCCGCCGCCGCTTCGTGCAGCTGCTAGCGGCC
GCGCCGCTGGCGCCGCTGGCCGCCGTCGCCGCGGCGGCGGCACCAGCGCC
AGCGCTCTCGCCGCGCGCGGCGGAAACGGCGGACGCAGACGGCGCAGTGG
GCGCAGTGGGCGACGTGGACGCGTTGGTATCCGAGCCGGCCATCACGCAG
CGCGTGGAGCTGCGGCTCGAGCTGCCGGACGGCAGCGTGCGCTCGCTCAC
GCTGGCGCTGTACGGCGAGCTAGCGCCGGCCACGACGGCCAACTTCGCGG
CGCTAGTAGCGGCGCGCGCGTACGACGACACGCGCGTGTACCGCGTGCTG
CCGCAGCTCACCGTGCAGCTGGGCGACACGCTGCGCAACGGCGGCGCGTC
GGGCGCGGCCGCCACGGCGGACGGCCGTCTGCGCGCGGAGAACTGGAGAC
TGTCGCACTCGGCGCCCGGCGTGCTGTCCATGGTGGTTGCGCACGGCTAC
GTGGATAGCCGCTTCTTTGTTACTACGCGACGCGGCGATAGCCGCTACTT
GGATGGCCGATACGTCGCCTTTGGCCGCGTCCAACGAGGGCTCGACGCGC
TGTTCGAGCTGGAGCGCGCCGTGGCTGCCGAGCAGCGCTCGCTGGTGCGC
CGCCCTGTGCGCGCGCGCATCGTCACCGCGCGCTTGCTGCAGTGA
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