Ggra2399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2399.t1
Unique NameGgra2399.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:133268..134863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706068.1
PFAMsMBOAT
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041
KEGG koko:K11155
KEGG ReactionR02251,R02366,R02367,R08381
KEGG Pathwayko00561,ko00830,ko01100,ko04975,map00561,map00830,map01100,map04975
KEGG ModuleM00089
Evalue3.52e-79
EggNOG OGsCOG5056@1|root,KOG0380@2759|Eukaryota
EC2.3.1.20,2.3.1.75,2.3.1.76
Descriptionsterol O-acyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2399Ggra2399Gracilaria gracilis GNS1m malegenetig00000005_pilon 133268..134863 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2399.t1.stop1Ggra2399.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 133268..133270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2399.t1.CDS1Ggra2399.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 133268..134863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2399.t1.exon1Ggra2399.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 133268..134863 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2399.t1.start1Ggra2399.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 134861..134863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2399.t1Ggra2399.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 133268..134863 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2399.t1 ID=Ggra2399.t1|Name=Ggra2399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MRSVQLSPSLLKRRSQLVHSLKASVTSTHASTPPCDQDVRPPSSPSSSSS
EVDADSISRPSLYVHEPRARAAPLEEYYGHEPRPIELLDELKSDRLEGFY
NLSFMLLAFCLAFLFVRNILEDGFGAWPSSICYSTLLKHSVRSFFLNLLL
PFPFLVAYWTTKGMQTRWLSVHQTVIVHGLSLLLFFSVATKLLFMAQVNP
LFGLIHGMLFVAVALKQHSYVLTNLLLDEETHLRRLQRQRERQRASASNG
NTRTTTTSTTTTTANTSAASESSLDSRGHSKATSSTRVKYPRNLTASNML
YYAVAPVLVYETSYPCTHTVRVRYVGWYSFQMLVCMMIQYVLIMQFCVPI
WRLGRGTDDEPRLLWYMVKLALPCFFIWLLLFFEFFHCALNVVAELTRFA
DRQFYREWWNATTLQAFWREWNVLVHEWCLRHLYVEGVRRHKVGRSTAAL
GTFVLSAILHEYVAFCGFRMLRPYVFLGMLSQLPLMRVSERLERRRAGNV
LMWGMLFAGQCSMGMLYVRDYLRRFGALVPC*
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spliced messenger RNA

>Ggra2399.t1 ID=Ggra2399.t1|Name=Ggra2399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000005_pilon:133268..134863- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCGTGCAACTGTCGCCCTCGCTGCTCAAGCGACGCTCGCAGCT
GGTTCACTCACTGAAGGCGTCAGTGACATCAACCCACGCATCCACACCAC
CGTGCGATCAAGATGTGCGTCCGCCATCAAGTCCGTCGTCCTCCTCCTCT
GAGGTAGACGCCGACTCCATCTCTCGCCCATCGCTGTATGTACACGAGCC
GCGCGCCAGGGCTGCGCCGCTCGAAGAGTATTACGGACATGAACCTCGCC
CTATCGAACTTTTGGACGAGCTTAAATCTGATCGTCTTGAAGGCTTTTAT
AACCTTTCCTTTATGCTGCTTGCGTTTTGTTTGGCGTTTCTGTTCGTCAG
GAACATTTTGGAGGACGGCTTCGGCGCTTGGCCGAGTTCCATCTGTTACA
GCACCTTACTCAAACATAGTGTACGCTCGTTCTTTCTTAACTTGCTACTG
CCGTTCCCGTTTCTTGTGGCGTACTGGACCACCAAGGGAATGCAGACCAG
ATGGCTTTCCGTGCACCAGACGGTGATTGTGCACGGCTTAAGTTTGTTAT
TATTCTTTTCTGTGGCCACCAAGCTGCTGTTCATGGCGCAGGTGAATCCA
TTGTTCGGACTGATTCACGGCATGTTATTCGTGGCGGTGGCGCTCAAGCA
GCACAGTTACGTGCTCACCAACCTGTTGCTGGACGAGGAGACGCACCTGC
GCCGTCTTCAACGCCAGCGTGAACGACAGCGTGCCAGTGCGTCGAACGGA
AACACTCGTACGACCACCACAAGCACCACCACCACCACGGCCAATACTAG
CGCAGCCTCGGAATCGTCGTTGGATTCACGCGGACATTCCAAGGCCACAA
GCAGCACGCGCGTCAAGTACCCGCGCAACCTGACGGCCAGCAACATGCTG
TACTATGCAGTGGCGCCCGTGCTCGTATACGAGACGAGCTACCCGTGCAC
GCACACGGTGCGCGTGCGGTACGTGGGGTGGTACAGCTTCCAAATGTTGG
TTTGCATGATGATTCAATACGTTCTCATCATGCAGTTCTGTGTGCCAATC
TGGCGGCTTGGGCGCGGCACGGACGATGAGCCGCGGCTGCTGTGGTACAT
GGTGAAGCTTGCGCTGCCGTGCTTCTTCATCTGGCTGCTGCTGTTCTTCG
AGTTCTTCCACTGCGCGCTGAACGTGGTGGCCGAGCTGACGCGCTTCGCG
GACAGACAGTTCTACCGCGAGTGGTGGAACGCGACGACGCTGCAGGCGTT
CTGGCGCGAGTGGAACGTGCTTGTTCACGAGTGGTGTCTGCGCCATCTGT
ACGTGGAGGGCGTGAGACGGCACAAAGTGGGGCGTAGCACTGCGGCTCTG
GGCACGTTCGTGCTGAGCGCGATTCTGCACGAGTACGTGGCGTTCTGCGG
GTTCCGCATGCTGCGGCCGTACGTTTTCCTGGGCATGCTGTCGCAGCTGC
CGCTGATGCGCGTGTCGGAGCGACTGGAGCGCCGGCGCGCGGGCAACGTG
CTCATGTGGGGCATGCTGTTCGCGGGGCAGTGCAGCATGGGCATGCTCTA
CGTGCGCGACTACCTGCGCCGCTTCGGGGCGCTGGTGCCTTGTTGA
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protein sequence of Ggra2399.t1

>Ggra2399.t1 ID=Ggra2399.t1|Name=Ggra2399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MRSVQLSPSLLKRRSQLVHSLKASVTSTHASTPPCDQDVRPPSSPSSSSS
EVDADSISRPSLYVHEPRARAAPLEEYYGHEPRPIELLDELKSDRLEGFY
NLSFMLLAFCLAFLFVRNILEDGFGAWPSSICYSTLLKHSVRSFFLNLLL
PFPFLVAYWTTKGMQTRWLSVHQTVIVHGLSLLLFFSVATKLLFMAQVNP
LFGLIHGMLFVAVALKQHSYVLTNLLLDEETHLRRLQRQRERQRASASNG
NTRTTTTSTTTTTANTSAASESSLDSRGHSKATSSTRVKYPRNLTASNML
YYAVAPVLVYETSYPCTHTVRVRYVGWYSFQMLVCMMIQYVLIMQFCVPI
WRLGRGTDDEPRLLWYMVKLALPCFFIWLLLFFEFFHCALNVVAELTRFA
DRQFYREWWNATTLQAFWREWNVLVHEWCLRHLYVEGVRRHKVGRSTAAL
GTFVLSAILHEYVAFCGFRMLRPYVFLGMLSQLPLMRVSERLERRRAGNV
LMWGMLFAGQCSMGMLYVRDYLRRFGALVPC*
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mRNA from alignment at tig00000005_pilon:133268..134863-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2399.t1 ID=Ggra2399.t1|Name=Ggra2399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000005_pilon:133268..134863- (Gracilaria gracilis GNS1m male)
ATGCGCAGCGTGCAACTGTCGCCCTCGCTGCTCAAGCGACGCTCGCAGCT
GGTTCACTCACTGAAGGCGTCAGTGACATCAACCCACGCATCCACACCAC
CGTGCGATCAAGATGTGCGTCCGCCATCAAGTCCGTCGTCCTCCTCCTCT
GAGGTAGACGCCGACTCCATCTCTCGCCCATCGCTGTATGTACACGAGCC
GCGCGCCAGGGCTGCGCCGCTCGAAGAGTATTACGGACATGAACCTCGCC
CTATCGAACTTTTGGACGAGCTTAAATCTGATCGTCTTGAAGGCTTTTAT
AACCTTTCCTTTATGCTGCTTGCGTTTTGTTTGGCGTTTCTGTTCGTCAG
GAACATTTTGGAGGACGGCTTCGGCGCTTGGCCGAGTTCCATCTGTTACA
GCACCTTACTCAAACATAGTGTACGCTCGTTCTTTCTTAACTTGCTACTG
CCGTTCCCGTTTCTTGTGGCGTACTGGACCACCAAGGGAATGCAGACCAG
ATGGCTTTCCGTGCACCAGACGGTGATTGTGCACGGCTTAAGTTTGTTAT
TATTCTTTTCTGTGGCCACCAAGCTGCTGTTCATGGCGCAGGTGAATCCA
TTGTTCGGACTGATTCACGGCATGTTATTCGTGGCGGTGGCGCTCAAGCA
GCACAGTTACGTGCTCACCAACCTGTTGCTGGACGAGGAGACGCACCTGC
GCCGTCTTCAACGCCAGCGTGAACGACAGCGTGCCAGTGCGTCGAACGGA
AACACTCGTACGACCACCACAAGCACCACCACCACCACGGCCAATACTAG
CGCAGCCTCGGAATCGTCGTTGGATTCACGCGGACATTCCAAGGCCACAA
GCAGCACGCGCGTCAAGTACCCGCGCAACCTGACGGCCAGCAACATGCTG
TACTATGCAGTGGCGCCCGTGCTCGTATACGAGACGAGCTACCCGTGCAC
GCACACGGTGCGCGTGCGGTACGTGGGGTGGTACAGCTTCCAAATGTTGG
TTTGCATGATGATTCAATACGTTCTCATCATGCAGTTCTGTGTGCCAATC
TGGCGGCTTGGGCGCGGCACGGACGATGAGCCGCGGCTGCTGTGGTACAT
GGTGAAGCTTGCGCTGCCGTGCTTCTTCATCTGGCTGCTGCTGTTCTTCG
AGTTCTTCCACTGCGCGCTGAACGTGGTGGCCGAGCTGACGCGCTTCGCG
GACAGACAGTTCTACCGCGAGTGGTGGAACGCGACGACGCTGCAGGCGTT
CTGGCGCGAGTGGAACGTGCTTGTTCACGAGTGGTGTCTGCGCCATCTGT
ACGTGGAGGGCGTGAGACGGCACAAAGTGGGGCGTAGCACTGCGGCTCTG
GGCACGTTCGTGCTGAGCGCGATTCTGCACGAGTACGTGGCGTTCTGCGG
GTTCCGCATGCTGCGGCCGTACGTTTTCCTGGGCATGCTGTCGCAGCTGC
CGCTGATGCGCGTGTCGGAGCGACTGGAGCGCCGGCGCGCGGGCAACGTG
CTCATGTGGGGCATGCTGTTCGCGGGGCAGTGCAGCATGGGCATGCTCTA
CGTGCGCGACTACCTGCGCCGCTTCGGGGCGCTGGTGCCTTGTTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:133268..134863-

>Ggra2399.t1 ID=Ggra2399.t1|Name=Ggra2399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000005_pilon:133268..134863- (Gracilaria gracilis GNS1m male)
ATGCGCAGCGTGCAACTGTCGCCCTCGCTGCTCAAGCGACGCTCGCAGCT
GGTTCACTCACTGAAGGCGTCAGTGACATCAACCCACGCATCCACACCAC
CGTGCGATCAAGATGTGCGTCCGCCATCAAGTCCGTCGTCCTCCTCCTCT
GAGGTAGACGCCGACTCCATCTCTCGCCCATCGCTGTATGTACACGAGCC
GCGCGCCAGGGCTGCGCCGCTCGAAGAGTATTACGGACATGAACCTCGCC
CTATCGAACTTTTGGACGAGCTTAAATCTGATCGTCTTGAAGGCTTTTAT
AACCTTTCCTTTATGCTGCTTGCGTTTTGTTTGGCGTTTCTGTTCGTCAG
GAACATTTTGGAGGACGGCTTCGGCGCTTGGCCGAGTTCCATCTGTTACA
GCACCTTACTCAAACATAGTGTACGCTCGTTCTTTCTTAACTTGCTACTG
CCGTTCCCGTTTCTTGTGGCGTACTGGACCACCAAGGGAATGCAGACCAG
ATGGCTTTCCGTGCACCAGACGGTGATTGTGCACGGCTTAAGTTTGTTAT
TATTCTTTTCTGTGGCCACCAAGCTGCTGTTCATGGCGCAGGTGAATCCA
TTGTTCGGACTGATTCACGGCATGTTATTCGTGGCGGTGGCGCTCAAGCA
GCACAGTTACGTGCTCACCAACCTGTTGCTGGACGAGGAGACGCACCTGC
GCCGTCTTCAACGCCAGCGTGAACGACAGCGTGCCAGTGCGTCGAACGGA
AACACTCGTACGACCACCACAAGCACCACCACCACCACGGCCAATACTAG
CGCAGCCTCGGAATCGTCGTTGGATTCACGCGGACATTCCAAGGCCACAA
GCAGCACGCGCGTCAAGTACCCGCGCAACCTGACGGCCAGCAACATGCTG
TACTATGCAGTGGCGCCCGTGCTCGTATACGAGACGAGCTACCCGTGCAC
GCACACGGTGCGCGTGCGGTACGTGGGGTGGTACAGCTTCCAAATGTTGG
TTTGCATGATGATTCAATACGTTCTCATCATGCAGTTCTGTGTGCCAATC
TGGCGGCTTGGGCGCGGCACGGACGATGAGCCGCGGCTGCTGTGGTACAT
GGTGAAGCTTGCGCTGCCGTGCTTCTTCATCTGGCTGCTGCTGTTCTTCG
AGTTCTTCCACTGCGCGCTGAACGTGGTGGCCGAGCTGACGCGCTTCGCG
GACAGACAGTTCTACCGCGAGTGGTGGAACGCGACGACGCTGCAGGCGTT
CTGGCGCGAGTGGAACGTGCTTGTTCACGAGTGGTGTCTGCGCCATCTGT
ACGTGGAGGGCGTGAGACGGCACAAAGTGGGGCGTAGCACTGCGGCTCTG
GGCACGTTCGTGCTGAGCGCGATTCTGCACGAGTACGTGGCGTTCTGCGG
GTTCCGCATGCTGCGGCCGTACGTTTTCCTGGGCATGCTGTCGCAGCTGC
CGCTGATGCGCGTGTCGGAGCGACTGGAGCGCCGGCGCGCGGGCAACGTG
CTCATGTGGGGCATGCTGTTCGCGGGGCAGTGCAGCATGGGCATGCTCTA
CGTGCGCGACTACCTGCGCCGCTTCGGGGCGCTGGTGCCTTGTTGA
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