Ggra10897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10897.t1
Unique NameGgra10897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000098_piloncontigtig00000098_pilon:55877..56740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4897.EEB05019
PFAMsDEAD,Helicase_C,OrsD
Max annot lvl4751|Fungi
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042592,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
Evalue9.04e-11
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota,39XWQ@33154|Opisthokonta,3P10I@4751|Fungi,3RKKE@4890|Ascomycota,3ME62@451866|Taphrinomycotina
EC3.6.4.12
Descriptionhelicase superfamily c-terminal domain
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10897Ggra10897Gracilaria gracilis GNS1m malegenetig00000098_pilon 55877..56740 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10897.t1.start1Ggra10897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000098_pilon 55877..55879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10897.t1.CDS1Ggra10897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000098_pilon 55877..56740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10897.t1.exon1Ggra10897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000098_pilon 55877..56740 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10897.t1.stop1Ggra10897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000098_pilon 56738..56740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10897.t1Ggra10897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000098_pilon 55877..56740 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10897.t1 ID=Ggra10897.t1|Name=Ggra10897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MEVHLANTEQDCEDPVAHDKLVVECNVSKARDPVTIDRNNVASFVRNMLD
IGMSLLYQEDFNVSFESCPQHSNCGIVRDIHISLRAIGEKVSNAHTQIED
LLFLKCLLGKGVPHGFLNHIYSLRDDFSSKSVGFFFLSNQKGPLYLESNE
AHFLGFLQMSGNIAVNESTLSNEEIISLFGINILKSVKIEWLNRCKELQH
LLLLNIHLSSGSPARATELITLRLRNEIHGMRNIFVSQGRKMIITKYSEA
RSTKGYARSIPRFPDFKTRDLLLTYIALIRPVEGDLV*
back to top

spliced messenger RNA

>Ggra10897.t1 ID=Ggra10897.t1|Name=Ggra10897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000098_pilon:55877..56740+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTCACCTGGCCAATACAGAGCAAGACTGTGAAGACCCCGTTGC
ACATGACAAACTTGTTGTCGAGTGTAATGTATCTAAAGCCCGCGACCCCG
TCACGATCGATCGCAATAATGTGGCCTCATTTGTGAGAAATATGCTAGAT
ATTGGCATGTCTCTCCTATACCAAGAGGACTTTAACGTCTCCTTCGAATC
TTGTCCACAACATTCAAATTGTGGAATTGTTCGGGACATTCACATATCAC
TGCGTGCCATTGGTGAAAAGGTATCAAATGCTCACACACAAATAGAAGAC
TTGTTATTTTTGAAATGTTTATTGGGCAAGGGTGTACCACACGGTTTCCT
CAATCATATCTACTCTCTCCGTGATGATTTCAGCTCGAAATCGGTTGGTT
TCTTCTTTCTAAGCAACCAGAAAGGGCCACTGTATCTCGAGAGTAATGAA
GCGCACTTTCTGGGTTTTCTACAGATGTCTGGAAATATTGCAGTGAATGA
ATCAACGCTTTCAAACGAAGAGATAATCAGCCTTTTCGGGATTAACATTC
TTAAATCAGTAAAAATCGAGTGGCTCAACAGGTGCAAAGAGCTCCAGCAT
CTTTTGCTTCTCAATATTCACTTATCATCTGGTTCTCCCGCTCGTGCCAC
TGAATTAATCACATTACGACTGAGAAACGAGATACACGGCATGCGGAACA
TATTTGTGTCGCAGGGAAGAAAAATGATCATCACTAAGTACTCAGAGGCG
AGATCTACAAAGGGATATGCTCGTTCTATTCCTAGATTCCCAGATTTCAA
GACCAGAGATTTGTTGCTAACTTACATTGCCCTGATTAGGCCGGTTGAGG
GGGACCTGGTTTGA
back to top

protein sequence of Ggra10897.t1

>Ggra10897.t1 ID=Ggra10897.t1|Name=Ggra10897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MEVHLANTEQDCEDPVAHDKLVVECNVSKARDPVTIDRNNVASFVRNMLD
IGMSLLYQEDFNVSFESCPQHSNCGIVRDIHISLRAIGEKVSNAHTQIED
LLFLKCLLGKGVPHGFLNHIYSLRDDFSSKSVGFFFLSNQKGPLYLESNE
AHFLGFLQMSGNIAVNESTLSNEEIISLFGINILKSVKIEWLNRCKELQH
LLLLNIHLSSGSPARATELITLRLRNEIHGMRNIFVSQGRKMIITKYSEA
RSTKGYARSIPRFPDFKTRDLLLTYIALIRPVEGDLV*
back to top

mRNA from alignment at tig00000098_pilon:55877..56740+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10897.t1 ID=Ggra10897.t1|Name=Ggra10897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000098_pilon:55877..56740+ (Gracilaria gracilis GNS1m male)
ATGGAAGTTCACCTGGCCAATACAGAGCAAGACTGTGAAGACCCCGTTGC
ACATGACAAACTTGTTGTCGAGTGTAATGTATCTAAAGCCCGCGACCCCG
TCACGATCGATCGCAATAATGTGGCCTCATTTGTGAGAAATATGCTAGAT
ATTGGCATGTCTCTCCTATACCAAGAGGACTTTAACGTCTCCTTCGAATC
TTGTCCACAACATTCAAATTGTGGAATTGTTCGGGACATTCACATATCAC
TGCGTGCCATTGGTGAAAAGGTATCAAATGCTCACACACAAATAGAAGAC
TTGTTATTTTTGAAATGTTTATTGGGCAAGGGTGTACCACACGGTTTCCT
CAATCATATCTACTCTCTCCGTGATGATTTCAGCTCGAAATCGGTTGGTT
TCTTCTTTCTAAGCAACCAGAAAGGGCCACTGTATCTCGAGAGTAATGAA
GCGCACTTTCTGGGTTTTCTACAGATGTCTGGAAATATTGCAGTGAATGA
ATCAACGCTTTCAAACGAAGAGATAATCAGCCTTTTCGGGATTAACATTC
TTAAATCAGTAAAAATCGAGTGGCTCAACAGGTGCAAAGAGCTCCAGCAT
CTTTTGCTTCTCAATATTCACTTATCATCTGGTTCTCCCGCTCGTGCCAC
TGAATTAATCACATTACGACTGAGAAACGAGATACACGGCATGCGGAACA
TATTTGTGTCGCAGGGAAGAAAAATGATCATCACTAAGTACTCAGAGGCG
AGATCTACAAAGGGATATGCTCGTTCTATTCCTAGATTCCCAGATTTCAA
GACCAGAGATTTGTTGCTAACTTACATTGCCCTGATTAGGCCGGTTGAGG
GGGACCTGGTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000098_pilon:55877..56740+

>Ggra10897.t1 ID=Ggra10897.t1|Name=Ggra10897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000098_pilon:55877..56740+ (Gracilaria gracilis GNS1m male)
ATGGAAGTTCACCTGGCCAATACAGAGCAAGACTGTGAAGACCCCGTTGC
ACATGACAAACTTGTTGTCGAGTGTAATGTATCTAAAGCCCGCGACCCCG
TCACGATCGATCGCAATAATGTGGCCTCATTTGTGAGAAATATGCTAGAT
ATTGGCATGTCTCTCCTATACCAAGAGGACTTTAACGTCTCCTTCGAATC
TTGTCCACAACATTCAAATTGTGGAATTGTTCGGGACATTCACATATCAC
TGCGTGCCATTGGTGAAAAGGTATCAAATGCTCACACACAAATAGAAGAC
TTGTTATTTTTGAAATGTTTATTGGGCAAGGGTGTACCACACGGTTTCCT
CAATCATATCTACTCTCTCCGTGATGATTTCAGCTCGAAATCGGTTGGTT
TCTTCTTTCTAAGCAACCAGAAAGGGCCACTGTATCTCGAGAGTAATGAA
GCGCACTTTCTGGGTTTTCTACAGATGTCTGGAAATATTGCAGTGAATGA
ATCAACGCTTTCAAACGAAGAGATAATCAGCCTTTTCGGGATTAACATTC
TTAAATCAGTAAAAATCGAGTGGCTCAACAGGTGCAAAGAGCTCCAGCAT
CTTTTGCTTCTCAATATTCACTTATCATCTGGTTCTCCCGCTCGTGCCAC
TGAATTAATCACATTACGACTGAGAAACGAGATACACGGCATGCGGAACA
TATTTGTGTCGCAGGGAAGAAAAATGATCATCACTAAGTACTCAGAGGCG
AGATCTACAAAGGGATATGCTCGTTCTATTCCTAGATTCCCAGATTTCAA
GACCAGAGATTTGTTGCTAACTTACATTGCCCTGATTAGGCCGGTTGAGG
GGGACCTGGTTTGA
back to top