Ggra6315.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6315.t1
Unique NameGgra6315.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:55214..56348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6315Ggra6315Gracilaria gracilis GNS1m malegenetig00000096_pilon 55214..56348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6315.t1Ggra6315.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 55214..56348 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6315.t1.start1Ggra6315.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 55214..55216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6315.t1.CDS1Ggra6315.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 55214..55302 +
Ggra6315.t1.CDS2Ggra6315.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 55406..56348 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6315.t1.exon1Ggra6315.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 55214..55302 +
Ggra6315.t1.exon2Ggra6315.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 55406..56348 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6315.t1.intron1Ggra6315.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 55303..55405 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6315.t1.stop1Ggra6315.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 56346..56348 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6315.t1 ID=Ggra6315.t1|Name=Ggra6315.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MVGAWVCLDFQNGKREGALLHFDNELGKHWFLTRGGGMWIDLSDVPLRLL
AVECSGDQLGGGNRTRDILPPTYPSTPPSQAPKLAQKAALRARAARHPRI
YQGAQHHFSTESNETTTVPLPHQITSMAQVIPPPPQDAIDASERQQRWQQ
VDRPDICPPGSLEQQKSGRESLSSSPPRVSSPSDAGRRFRKPRRYRKSTS
ISLPFPFSSRLGREENEAEALLMPAPSTPKRRSVELAEPVVRSALPSPVK
RVRFPPMARPSTPFPARDAMPINPERNGHIASWSKSLSPPSTMLCSPAPL
GRSLPADIDSGLHSSKLDRPIAGKEGSARSDVVAPRSAASVSK*
back to top

spliced messenger RNA

>Ggra6315.t1 ID=Ggra6315.t1|Name=Ggra6315.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000096_pilon:55214..56348+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCGCCTGGGTTTGCTTGGACTTTCAGAATGGCAAACGTGAAGG
TGCACTGCTACACTTTGACAACGAGCTTGGAAAGCACTGGTTCCTGACAA
GAGGAGGTGGCATGTGGATTGATTTGTCCGACGTGCCACTTAGGTTGTTG
GCAGTAGAATGCAGTGGGGATCAACTCGGCGGCGGGAATAGAACTCGAGA
CATTCTACCACCCACTTATCCCTCTACACCGCCTTCACAGGCGCCCAAAC
TCGCCCAAAAGGCTGCCTTGCGTGCACGCGCTGCACGGCATCCCAGGATC
TACCAGGGTGCACAGCACCACTTCTCAACAGAGAGCAATGAGACGACGAC
CGTACCCTTGCCGCACCAGATTACATCAATGGCGCAAGTCATTCCGCCGC
CACCACAAGATGCAATAGACGCCTCAGAGCGACAGCAACGATGGCAGCAG
GTTGATCGACCAGATATCTGTCCTCCAGGATCTTTGGAGCAGCAGAAGAG
CGGTCGTGAATCGCTCTCTTCGTCGCCGCCGAGGGTTTCATCCCCCTCAG
ATGCTGGCAGAAGATTTCGGAAACCTCGACGTTATCGAAAGAGCACTAGT
ATCTCACTACCATTTCCATTTTCATCAAGGTTGGGGAGAGAGGAGAACGA
AGCGGAAGCCCTGCTTATGCCAGCGCCATCGACTCCAAAACGACGTAGTG
TTGAACTTGCTGAACCGGTGGTACGTTCTGCGCTACCATCCCCCGTGAAA
AGGGTTCGATTCCCACCAATGGCAAGGCCATCGACACCTTTTCCGGCTCG
AGATGCAATGCCCATCAATCCGGAAAGAAATGGACATATAGCTTCATGGT
CGAAATCTCTTTCTCCACCATCAACGATGCTGTGCTCGCCGGCCCCTCTT
GGGAGAAGTCTTCCTGCAGACATAGATAGTGGTTTGCACAGCTCAAAATT
GGACAGGCCGATTGCTGGTAAAGAGGGCAGTGCGCGTAGCGATGTAGTGG
CACCCAGGTCTGCGGCATCTGTTAGTAAGTAG
back to top

protein sequence of Ggra6315.t1

>Ggra6315.t1 ID=Ggra6315.t1|Name=Ggra6315.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MVGAWVCLDFQNGKREGALLHFDNELGKHWFLTRGGGMWIDLSDVPLRLL
AVECSGDQLGGGNRTRDILPPTYPSTPPSQAPKLAQKAALRARAARHPRI
YQGAQHHFSTESNETTTVPLPHQITSMAQVIPPPPQDAIDASERQQRWQQ
VDRPDICPPGSLEQQKSGRESLSSSPPRVSSPSDAGRRFRKPRRYRKSTS
ISLPFPFSSRLGREENEAEALLMPAPSTPKRRSVELAEPVVRSALPSPVK
RVRFPPMARPSTPFPARDAMPINPERNGHIASWSKSLSPPSTMLCSPAPL
GRSLPADIDSGLHSSKLDRPIAGKEGSARSDVVAPRSAASVSK*
back to top

mRNA from alignment at tig00000096_pilon:55214..56348+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6315.t1 ID=Ggra6315.t1|Name=Ggra6315.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1135bp|location=Sequence derived from alignment at tig00000096_pilon:55214..56348+ (Gracilaria gracilis GNS1m male)
ATGGTCGGCGCCTGGGTTTGCTTGGACTTTCAGAATGGCAAACGTGAAGG
TGCACTGCTACACTTTGACAACGAGCTTGGAAAGCACTGGTAAGTTTGCG
TCTGTTCTCATAATCAGTGCTTAGGGGCATACGAGATACAATCCAGCTAA
CGTTCTGCATATGCTTGTTGTTCGCCCATTTCTGGGAAACAGGTTCCTGA
CAAGAGGAGGTGGCATGTGGATTGATTTGTCCGACGTGCCACTTAGGTTG
TTGGCAGTAGAATGCAGTGGGGATCAACTCGGCGGCGGGAATAGAACTCG
AGACATTCTACCACCCACTTATCCCTCTACACCGCCTTCACAGGCGCCCA
AACTCGCCCAAAAGGCTGCCTTGCGTGCACGCGCTGCACGGCATCCCAGG
ATCTACCAGGGTGCACAGCACCACTTCTCAACAGAGAGCAATGAGACGAC
GACCGTACCCTTGCCGCACCAGATTACATCAATGGCGCAAGTCATTCCGC
CGCCACCACAAGATGCAATAGACGCCTCAGAGCGACAGCAACGATGGCAG
CAGGTTGATCGACCAGATATCTGTCCTCCAGGATCTTTGGAGCAGCAGAA
GAGCGGTCGTGAATCGCTCTCTTCGTCGCCGCCGAGGGTTTCATCCCCCT
CAGATGCTGGCAGAAGATTTCGGAAACCTCGACGTTATCGAAAGAGCACT
AGTATCTCACTACCATTTCCATTTTCATCAAGGTTGGGGAGAGAGGAGAA
CGAAGCGGAAGCCCTGCTTATGCCAGCGCCATCGACTCCAAAACGACGTA
GTGTTGAACTTGCTGAACCGGTGGTACGTTCTGCGCTACCATCCCCCGTG
AAAAGGGTTCGATTCCCACCAATGGCAAGGCCATCGACACCTTTTCCGGC
TCGAGATGCAATGCCCATCAATCCGGAAAGAAATGGACATATAGCTTCAT
GGTCGAAATCTCTTTCTCCACCATCAACGATGCTGTGCTCGCCGGCCCCT
CTTGGGAGAAGTCTTCCTGCAGACATAGATAGTGGTTTGCACAGCTCAAA
ATTGGACAGGCCGATTGCTGGTAAAGAGGGCAGTGCGCGTAGCGATGTAG
TGGCACCCAGGTCTGCGGCATCTGTTAGTAAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000096_pilon:55214..56348+

>Ggra6315.t1 ID=Ggra6315.t1|Name=Ggra6315.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000096_pilon:55214..56348+ (Gracilaria gracilis GNS1m male)
ATGGTCGGCGCCTGGGTTTGCTTGGACTTTCAGAATGGCAAACGTGAAGG
TGCACTGCTACACTTTGACAACGAGCTTGGAAAGCACTGGTTCCTGACAA
GAGGAGGTGGCATGTGGATTGATTTGTCCGACGTGCCACTTAGGTTGTTG
GCAGTAGAATGCAGTGGGGATCAACTCGGCGGCGGGAATAGAACTCGAGA
CATTCTACCACCCACTTATCCCTCTACACCGCCTTCACAGGCGCCCAAAC
TCGCCCAAAAGGCTGCCTTGCGTGCACGCGCTGCACGGCATCCCAGGATC
TACCAGGGTGCACAGCACCACTTCTCAACAGAGAGCAATGAGACGACGAC
CGTACCCTTGCCGCACCAGATTACATCAATGGCGCAAGTCATTCCGCCGC
CACCACAAGATGCAATAGACGCCTCAGAGCGACAGCAACGATGGCAGCAG
GTTGATCGACCAGATATCTGTCCTCCAGGATCTTTGGAGCAGCAGAAGAG
CGGTCGTGAATCGCTCTCTTCGTCGCCGCCGAGGGTTTCATCCCCCTCAG
ATGCTGGCAGAAGATTTCGGAAACCTCGACGTTATCGAAAGAGCACTAGT
ATCTCACTACCATTTCCATTTTCATCAAGGTTGGGGAGAGAGGAGAACGA
AGCGGAAGCCCTGCTTATGCCAGCGCCATCGACTCCAAAACGACGTAGTG
TTGAACTTGCTGAACCGGTGGTACGTTCTGCGCTACCATCCCCCGTGAAA
AGGGTTCGATTCCCACCAATGGCAAGGCCATCGACACCTTTTCCGGCTCG
AGATGCAATGCCCATCAATCCGGAAAGAAATGGACATATAGCTTCATGGT
CGAAATCTCTTTCTCCACCATCAACGATGCTGTGCTCGCCGGCCCCTCTT
GGGAGAAGTCTTCCTGCAGACATAGATAGTGGTTTGCACAGCTCAAAATT
GGACAGGCCGATTGCTGGTAAAGAGGGCAGTGCGCGTAGCGATGTAGTGG
CACCCAGGTCTGCGGCATCTGTTAGTAAGTAG
back to top