Ggra6328.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6328.t1
Unique NameGgra6328.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:187738..189164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6328Ggra6328Gracilaria gracilis GNS1m malegenetig00000096_pilon 187738..189164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1Ggra6328.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 187738..189164 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1.stop1Ggra6328.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 187738..187740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1.CDS1Ggra6328.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 187738..187788 -
Ggra6328.t1.CDS2Ggra6328.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 187869..189164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1.exon1Ggra6328.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 187738..187788 -
Ggra6328.t1.exon2Ggra6328.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 187869..189164 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1.intron1Ggra6328.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 187789..187868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6328.t1.start1Ggra6328.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 189162..189164 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6328.t1 ID=Ggra6328.t1|Name=Ggra6328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=449bp
MSSVHDSEARAPTQPTASHTPSPLPEVHDNSSLVSNPQSSFQELSPPITP
DGQKLGTLHLQPATAQELFDIDRFIYGDYDLVDGLLIWRGMSEGDRNKQQ
AKNLLHLFRQREHANPTSNRVATVQASIAIPTKRYLRSQPSSSSAPPLSE
DSDESSAPRNGHPNYSILTADLAIGQKLSEEERRKLSPASKNITFPLLNP
KRPPEAVYECSSTNESRDMKEKPSLYAAAEIPKYVVVNNRARSKRPQPAV
YEGNLRDGKYEGFNTPRRGTDKVDLGPIGIIDAKDCINPGDVDGRMHRED
REQRMRRQEAEKREQEEKEKRQKAEEREQEEKKKRQKAEEREQEEKKKRQ
KEKEIRQKAEEREQEEKKKRQKAEEREQEEKKKRQKEKEKRQKAEEREQE
EKKKRQEEKRKRREKDAKIKEQRELMRKAGLLPKLKQLGCKKSTSKEA*
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spliced messenger RNA

>Ggra6328.t1 ID=Ggra6328.t1|Name=Ggra6328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000096_pilon:187738..189164- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTGTGCACGACAGTGAAGCGCGCGCACCAACACAGCCAACAGC
ATCACACACACCTTCACCACTGCCGGAAGTTCATGACAATTCGTCTCTTG
TTAGCAACCCGCAGTCGTCTTTCCAAGAACTATCACCTCCAATAACGCCT
GATGGTCAGAAGTTGGGAACACTACATCTTCAACCGGCCACAGCGCAAGA
GCTTTTCGATATTGACAGGTTTATTTACGGTGATTACGACTTGGTTGACG
GTCTGCTGATTTGGCGCGGTATGTCAGAAGGAGACAGAAACAAGCAACAA
GCAAAAAACCTTCTGCATCTTTTTCGACAACGCGAACATGCCAACCCTAC
CAGTAACCGTGTTGCAACAGTACAAGCCTCTATTGCGATTCCAACCAAAC
GCTACCTCAGGTCTCAACCATCATCCAGCAGTGCTCCGCCACTAAGCGAA
GATTCCGACGAAAGCTCAGCCCCTCGCAATGGCCATCCAAACTACAGTAT
ACTCACCGCCGATCTTGCAATCGGTCAAAAACTCTCAGAGGAAGAGCGCC
GGAAATTATCACCGGCTAGCAAGAACATAACGTTTCCACTTCTTAATCCG
AAACGTCCACCAGAGGCTGTATATGAATGTTCTAGCACAAATGAAAGTAG
GGACATGAAAGAAAAACCGAGTTTGTACGCTGCTGCCGAAATCCCCAAGT
ATGTTGTCGTAAACAACCGAGCTCGTTCCAAACGCCCTCAACCAGCGGTA
TACGAAGGAAACCTTCGCGACGGAAAGTATGAGGGATTTAACACGCCTCG
CCGAGGCACAGACAAAGTTGATCTTGGGCCCATTGGAATAATTGATGCAA
AAGATTGCATCAACCCTGGAGACGTGGATGGACGAATGCACAGAGAAGAT
AGGGAGCAACGCATGAGAAGGCAAGAAGCAGAAAAGCGGGAACAGGAGGA
GAAGGAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGA
AAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGAAGAGGCAG
AAAGAGAAGGAGATAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAA
GAAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGAAGA
GGCAGAAAGAGAAGGAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAA
GAGAAGAAGAAGAGGCAGGAAGAGAAAAGAAAAAGAAGAGAGAAAGATGC
AAAGATAAAGGAGCAACGCGAGCTGATGAGAAAAGCCGGCCTTCTGCCCA
AGCTCAAGCAGCTCGGTTGCAAGAAGTCCACCTCGAAAGAAGCGTAA
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protein sequence of Ggra6328.t1

>Ggra6328.t1 ID=Ggra6328.t1|Name=Ggra6328.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=449bp
MSSVHDSEARAPTQPTASHTPSPLPEVHDNSSLVSNPQSSFQELSPPITP
DGQKLGTLHLQPATAQELFDIDRFIYGDYDLVDGLLIWRGMSEGDRNKQQ
AKNLLHLFRQREHANPTSNRVATVQASIAIPTKRYLRSQPSSSSAPPLSE
DSDESSAPRNGHPNYSILTADLAIGQKLSEEERRKLSPASKNITFPLLNP
KRPPEAVYECSSTNESRDMKEKPSLYAAAEIPKYVVVNNRARSKRPQPAV
YEGNLRDGKYEGFNTPRRGTDKVDLGPIGIIDAKDCINPGDVDGRMHRED
REQRMRRQEAEKREQEEKEKRQKAEEREQEEKKKRQKAEEREQEEKKKRQ
KEKEIRQKAEEREQEEKKKRQKAEEREQEEKKKRQKEKEKRQKAEEREQE
EKKKRQEEKRKRREKDAKIKEQRELMRKAGLLPKLKQLGCKKSTSKEA*
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mRNA from alignment at tig00000096_pilon:187738..189164-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6328.t1 ID=Ggra6328.t1|Name=Ggra6328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1427bp|location=Sequence derived from alignment at tig00000096_pilon:187738..189164- (Gracilaria gracilis GNS1m male)
ATGTCCTCTGTGCACGACAGTGAAGCGCGCGCACCAACACAGCCAACAGC
ATCACACACACCTTCACCACTGCCGGAAGTTCATGACAATTCGTCTCTTG
TTAGCAACCCGCAGTCGTCTTTCCAAGAACTATCACCTCCAATAACGCCT
GATGGTCAGAAGTTGGGAACACTACATCTTCAACCGGCCACAGCGCAAGA
GCTTTTCGATATTGACAGGTTTATTTACGGTGATTACGACTTGGTTGACG
GTCTGCTGATTTGGCGCGGTATGTCAGAAGGAGACAGAAACAAGCAACAA
GCAAAAAACCTTCTGCATCTTTTTCGACAACGCGAACATGCCAACCCTAC
CAGTAACCGTGTTGCAACAGTACAAGCCTCTATTGCGATTCCAACCAAAC
GCTACCTCAGGTCTCAACCATCATCCAGCAGTGCTCCGCCACTAAGCGAA
GATTCCGACGAAAGCTCAGCCCCTCGCAATGGCCATCCAAACTACAGTAT
ACTCACCGCCGATCTTGCAATCGGTCAAAAACTCTCAGAGGAAGAGCGCC
GGAAATTATCACCGGCTAGCAAGAACATAACGTTTCCACTTCTTAATCCG
AAACGTCCACCAGAGGCTGTATATGAATGTTCTAGCACAAATGAAAGTAG
GGACATGAAAGAAAAACCGAGTTTGTACGCTGCTGCCGAAATCCCCAAGT
ATGTTGTCGTAAACAACCGAGCTCGTTCCAAACGCCCTCAACCAGCGGTA
TACGAAGGAAACCTTCGCGACGGAAAGTATGAGGGATTTAACACGCCTCG
CCGAGGCACAGACAAAGTTGATCTTGGGCCCATTGGAATAATTGATGCAA
AAGATTGCATCAACCCTGGAGACGTGGATGGACGAATGCACAGAGAAGAT
AGGGAGCAACGCATGAGAAGGCAAGAAGCAGAAAAGCGGGAACAGGAGGA
GAAGGAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGA
AAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGAAGAGGCAG
AAAGAGAAGGAGATAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAA
GAAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGAAGA
GGCAGAAAGAGAAGGAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAA
GAGAAGAAGAAGAGGCAGGAAGAGAAAAGAAAAAGAAGAGAGAAAGATGC
AAAGATAAAGGAGCAACGCGAGCTGATGAGAAAAGCCGGCCTTCTGGTTA
GTGATAGCAGCTCGAGTTCGAAGAGCAGTCCAAGCTCAAGTTCAAAAGGC
AGCCCGAGCTCAAGTTCGAAAAGCAGCCCAAGCTCAAGCAGCTCGGTTGC
AAGAAGTCCACCTCGAAAGAAGCGTAA
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Coding sequence (CDS) from alignment at tig00000096_pilon:187738..189164-

>Ggra6328.t1 ID=Ggra6328.t1|Name=Ggra6328.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000096_pilon:187738..189164- (Gracilaria gracilis GNS1m male)
ATGTCCTCTGTGCACGACAGTGAAGCGCGCGCACCAACACAGCCAACAGC
ATCACACACACCTTCACCACTGCCGGAAGTTCATGACAATTCGTCTCTTG
TTAGCAACCCGCAGTCGTCTTTCCAAGAACTATCACCTCCAATAACGCCT
GATGGTCAGAAGTTGGGAACACTACATCTTCAACCGGCCACAGCGCAAGA
GCTTTTCGATATTGACAGGTTTATTTACGGTGATTACGACTTGGTTGACG
GTCTGCTGATTTGGCGCGGTATGTCAGAAGGAGACAGAAACAAGCAACAA
GCAAAAAACCTTCTGCATCTTTTTCGACAACGCGAACATGCCAACCCTAC
CAGTAACCGTGTTGCAACAGTACAAGCCTCTATTGCGATTCCAACCAAAC
GCTACCTCAGGTCTCAACCATCATCCAGCAGTGCTCCGCCACTAAGCGAA
GATTCCGACGAAAGCTCAGCCCCTCGCAATGGCCATCCAAACTACAGTAT
ACTCACCGCCGATCTTGCAATCGGTCAAAAACTCTCAGAGGAAGAGCGCC
GGAAATTATCACCGGCTAGCAAGAACATAACGTTTCCACTTCTTAATCCG
AAACGTCCACCAGAGGCTGTATATGAATGTTCTAGCACAAATGAAAGTAG
GGACATGAAAGAAAAACCGAGTTTGTACGCTGCTGCCGAAATCCCCAAGT
ATGTTGTCGTAAACAACCGAGCTCGTTCCAAACGCCCTCAACCAGCGGTA
TACGAAGGAAACCTTCGCGACGGAAAGTATGAGGGATTTAACACGCCTCG
CCGAGGCACAGACAAAGTTGATCTTGGGCCCATTGGAATAATTGATGCAA
AAGATTGCATCAACCCTGGAGACGTGGATGGACGAATGCACAGAGAAGAT
AGGGAGCAACGCATGAGAAGGCAAGAAGCAGAAAAGCGGGAACAGGAGGA
GAAGGAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGA
AAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGAAGAGGCAG
AAAGAGAAGGAGATAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAA
GAAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAAGAGAAGAAGAAGA
GGCAGAAAGAGAAGGAGAAAAGGCAGAAAGCAGAGGAGAGAGAACAGGAA
GAGAAGAAGAAGAGGCAGGAAGAGAAAAGAAAAAGAAGAGAGAAAGATGC
AAAGATAAAGGAGCAACGCGAGCTGATGAGAAAAGCCGGCCTTCTGCCCA
AGCTCAAGCAGCTCGGTTGCAAGAAGTCCACCTCGAAAGAAGCGTAA
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