Ggra4862.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4862.t1
Unique NameGgra4862.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:316764..318320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog50452.A0A087HK10
PFAMsNramp
Max annot lvl35493|Streptophyta
KEGG koko:K03322,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2,2.A.55.2.6,2.A.55.3
KEGG Pathwayko04142,ko04216,ko04978,map04142,map04216,map04978
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006828,GO:0008150,GO:0008324,GO:0015075,GO:0015086,GO:0015318,GO:0015691,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0034755,GO:0042592,GO:0044464,GO:0046873,GO:0046915,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070574,GO:0070838,GO:0071421,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771
Evalue1.51e-72
EggNOG OGsCOG1914@1|root,KOG1291@2759|Eukaryota,37I3K@33090|Viridiplantae,3G9ZW@35493|Streptophyta
DescriptionMetal transporter
COG categoryP
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4862Ggra4862Gracilaria gracilis GNS1m malegenetig00000090_pilon 316764..318320 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4862.t1.start1Ggra4862.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 316764..316766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4862.t1.CDS1Ggra4862.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 316764..318320 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4862.t1.exon1Ggra4862.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 316764..318320 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4862.t1.stop1Ggra4862.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 318318..318320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4862.t1Ggra4862.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 316764..318320 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4862.t1 ID=Ggra4862.t1|Name=Ggra4862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp
MLSFDQTDDQQPRAVRPNELRPSSSDDRCRSRARPSLSSFVAAFGIPCLI
AVAAIDPGNLELDLQAGHALRYTLIWVILFSSVLGWILQSLVAHLTICSG
KPLAALLALAYKKHRLLSISMFVVAEVSVIAFDIAEVVGTAIALQLLFQW
PLWVGIMLSGLDTMLVLFLQQNGLTRVELVIELSLFLLAACLFYEFVISR
PDIFSIVQGSVVPSLGPDPTQGAILGVGILGSVVMAHNLFLHSWLVYDRN
KEDDMLSDYPLQIPGITRYLRQSCRYATIEAGAIFVATYLINTCVVAITA
SLPEKSLRSISSIGLQDAGALLSSILGAKFASTAWAIALLCSGHAATVTG
ALASQAVCEGFLNIQGRQTSLVILATRAIAILPAMVAALAAGEASANKLV
VLSQVILSLALPFAVIPMFKLLVSVDRISHNSVLNKKMLAGGYVAFAFLM
AANIYVFYDMVIEINQLFGCFAAFGVCLLALFSVYLIAKIVVTPIDFSEL
STPAEWMWDTKETSPLLN*
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spliced messenger RNA

>Ggra4862.t1 ID=Ggra4862.t1|Name=Ggra4862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000090_pilon:316764..318320+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCCTTCGACCAAACAGATGACCAGCAGCCGCGCGCCGTGCGACC
GAATGAGCTGCGGCCAAGCTCTTCAGACGACCGCTGTCGCTCGCGCGCGC
GTCCGTCGCTCTCCAGCTTCGTCGCAGCGTTTGGCATCCCGTGTCTGATC
GCAGTGGCCGCCATAGACCCCGGCAACCTTGAGCTTGACTTGCAGGCCGG
CCATGCGTTGCGCTACACATTGATATGGGTCATTCTCTTCTCCAGCGTGC
TGGGCTGGATTTTGCAATCGCTCGTTGCTCATCTTACCATTTGCTCGGGA
AAGCCGCTGGCCGCGCTCTTGGCGCTGGCTTACAAGAAACACCGACTTTT
GTCCATCTCCATGTTCGTGGTGGCTGAGGTTTCAGTCATTGCGTTTGATA
TCGCCGAGGTTGTAGGTACTGCCATCGCCTTGCAGCTTTTGTTCCAGTGG
CCCTTGTGGGTGGGTATCATGTTGTCGGGTCTGGATACCATGCTGGTTTT
GTTCTTGCAGCAGAATGGCTTGACCAGAGTGGAGCTTGTGATCGAGTTGT
CACTGTTTTTGCTTGCTGCCTGTCTCTTCTACGAATTTGTCATATCTCGT
CCGGACATCTTCTCTATCGTTCAAGGCTCTGTTGTACCCAGTTTGGGACC
AGACCCCACCCAGGGTGCAATTCTTGGCGTCGGTATACTCGGAAGCGTGG
TCATGGCTCACAACCTTTTCTTGCATAGCTGGCTCGTGTACGATCGAAAC
AAGGAAGATGATATGCTGTCGGATTATCCTTTGCAGATCCCTGGCATCAC
GCGCTACCTGCGCCAAAGTTGTCGTTATGCCACCATCGAAGCGGGCGCAA
TTTTCGTCGCCACTTACCTTATTAACACTTGCGTCGTTGCCATCACTGCT
TCCTTACCGGAGAAGAGCCTACGATCTATCTCATCTATTGGTCTCCAGGA
CGCTGGCGCTCTTCTGTCGTCAATACTGGGAGCCAAGTTTGCCTCTACGG
CGTGGGCGATCGCTTTGCTTTGTAGTGGCCATGCTGCTACCGTTACCGGT
GCGTTAGCGAGCCAGGCGGTTTGTGAGGGCTTCCTCAACATTCAAGGCCG
ACAGACTTCCCTGGTCATCCTAGCCACGCGCGCTATTGCTATTCTGCCCG
CTATGGTTGCCGCACTTGCCGCTGGCGAGGCAAGTGCGAATAAGCTTGTG
GTACTCTCTCAAGTAATTTTGTCGCTCGCGCTCCCGTTTGCCGTTATCCC
CATGTTCAAGCTCCTGGTTAGTGTTGACCGAATATCTCACAACAGTGTTC
TGAACAAGAAGATGTTAGCGGGAGGCTATGTGGCGTTTGCGTTTTTGATG
GCCGCAAACATATATGTTTTCTACGATATGGTGATCGAGATCAACCAGCT
TTTCGGTTGCTTTGCGGCGTTCGGCGTTTGTCTTCTTGCGCTATTCTCTG
TTTATTTGATAGCGAAGATTGTTGTCACTCCGATTGATTTCTCTGAATTA
TCAACACCGGCAGAATGGATGTGGGATACTAAGGAAACAAGCCCATTACT
TAACTAA
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protein sequence of Ggra4862.t1

>Ggra4862.t1 ID=Ggra4862.t1|Name=Ggra4862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=519bp
MLSFDQTDDQQPRAVRPNELRPSSSDDRCRSRARPSLSSFVAAFGIPCLI
AVAAIDPGNLELDLQAGHALRYTLIWVILFSSVLGWILQSLVAHLTICSG
KPLAALLALAYKKHRLLSISMFVVAEVSVIAFDIAEVVGTAIALQLLFQW
PLWVGIMLSGLDTMLVLFLQQNGLTRVELVIELSLFLLAACLFYEFVISR
PDIFSIVQGSVVPSLGPDPTQGAILGVGILGSVVMAHNLFLHSWLVYDRN
KEDDMLSDYPLQIPGITRYLRQSCRYATIEAGAIFVATYLINTCVVAITA
SLPEKSLRSISSIGLQDAGALLSSILGAKFASTAWAIALLCSGHAATVTG
ALASQAVCEGFLNIQGRQTSLVILATRAIAILPAMVAALAAGEASANKLV
VLSQVILSLALPFAVIPMFKLLVSVDRISHNSVLNKKMLAGGYVAFAFLM
AANIYVFYDMVIEINQLFGCFAAFGVCLLALFSVYLIAKIVVTPIDFSEL
STPAEWMWDTKETSPLLN*
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mRNA from alignment at tig00000090_pilon:316764..318320+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4862.t1 ID=Ggra4862.t1|Name=Ggra4862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000090_pilon:316764..318320+ (Gracilaria gracilis GNS1m male)
ATGTTGTCCTTCGACCAAACAGATGACCAGCAGCCGCGCGCCGTGCGACC
GAATGAGCTGCGGCCAAGCTCTTCAGACGACCGCTGTCGCTCGCGCGCGC
GTCCGTCGCTCTCCAGCTTCGTCGCAGCGTTTGGCATCCCGTGTCTGATC
GCAGTGGCCGCCATAGACCCCGGCAACCTTGAGCTTGACTTGCAGGCCGG
CCATGCGTTGCGCTACACATTGATATGGGTCATTCTCTTCTCCAGCGTGC
TGGGCTGGATTTTGCAATCGCTCGTTGCTCATCTTACCATTTGCTCGGGA
AAGCCGCTGGCCGCGCTCTTGGCGCTGGCTTACAAGAAACACCGACTTTT
GTCCATCTCCATGTTCGTGGTGGCTGAGGTTTCAGTCATTGCGTTTGATA
TCGCCGAGGTTGTAGGTACTGCCATCGCCTTGCAGCTTTTGTTCCAGTGG
CCCTTGTGGGTGGGTATCATGTTGTCGGGTCTGGATACCATGCTGGTTTT
GTTCTTGCAGCAGAATGGCTTGACCAGAGTGGAGCTTGTGATCGAGTTGT
CACTGTTTTTGCTTGCTGCCTGTCTCTTCTACGAATTTGTCATATCTCGT
CCGGACATCTTCTCTATCGTTCAAGGCTCTGTTGTACCCAGTTTGGGACC
AGACCCCACCCAGGGTGCAATTCTTGGCGTCGGTATACTCGGAAGCGTGG
TCATGGCTCACAACCTTTTCTTGCATAGCTGGCTCGTGTACGATCGAAAC
AAGGAAGATGATATGCTGTCGGATTATCCTTTGCAGATCCCTGGCATCAC
GCGCTACCTGCGCCAAAGTTGTCGTTATGCCACCATCGAAGCGGGCGCAA
TTTTCGTCGCCACTTACCTTATTAACACTTGCGTCGTTGCCATCACTGCT
TCCTTACCGGAGAAGAGCCTACGATCTATCTCATCTATTGGTCTCCAGGA
CGCTGGCGCTCTTCTGTCGTCAATACTGGGAGCCAAGTTTGCCTCTACGG
CGTGGGCGATCGCTTTGCTTTGTAGTGGCCATGCTGCTACCGTTACCGGT
GCGTTAGCGAGCCAGGCGGTTTGTGAGGGCTTCCTCAACATTCAAGGCCG
ACAGACTTCCCTGGTCATCCTAGCCACGCGCGCTATTGCTATTCTGCCCG
CTATGGTTGCCGCACTTGCCGCTGGCGAGGCAAGTGCGAATAAGCTTGTG
GTACTCTCTCAAGTAATTTTGTCGCTCGCGCTCCCGTTTGCCGTTATCCC
CATGTTCAAGCTCCTGGTTAGTGTTGACCGAATATCTCACAACAGTGTTC
TGAACAAGAAGATGTTAGCGGGAGGCTATGTGGCGTTTGCGTTTTTGATG
GCCGCAAACATATATGTTTTCTACGATATGGTGATCGAGATCAACCAGCT
TTTCGGTTGCTTTGCGGCGTTCGGCGTTTGTCTTCTTGCGCTATTCTCTG
TTTATTTGATAGCGAAGATTGTTGTCACTCCGATTGATTTCTCTGAATTA
TCAACACCGGCAGAATGGATGTGGGATACTAAGGAAACAAGCCCATTACT
TAACTAA
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Coding sequence (CDS) from alignment at tig00000090_pilon:316764..318320+

>Ggra4862.t1 ID=Ggra4862.t1|Name=Ggra4862.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000090_pilon:316764..318320+ (Gracilaria gracilis GNS1m male)
ATGTTGTCCTTCGACCAAACAGATGACCAGCAGCCGCGCGCCGTGCGACC
GAATGAGCTGCGGCCAAGCTCTTCAGACGACCGCTGTCGCTCGCGCGCGC
GTCCGTCGCTCTCCAGCTTCGTCGCAGCGTTTGGCATCCCGTGTCTGATC
GCAGTGGCCGCCATAGACCCCGGCAACCTTGAGCTTGACTTGCAGGCCGG
CCATGCGTTGCGCTACACATTGATATGGGTCATTCTCTTCTCCAGCGTGC
TGGGCTGGATTTTGCAATCGCTCGTTGCTCATCTTACCATTTGCTCGGGA
AAGCCGCTGGCCGCGCTCTTGGCGCTGGCTTACAAGAAACACCGACTTTT
GTCCATCTCCATGTTCGTGGTGGCTGAGGTTTCAGTCATTGCGTTTGATA
TCGCCGAGGTTGTAGGTACTGCCATCGCCTTGCAGCTTTTGTTCCAGTGG
CCCTTGTGGGTGGGTATCATGTTGTCGGGTCTGGATACCATGCTGGTTTT
GTTCTTGCAGCAGAATGGCTTGACCAGAGTGGAGCTTGTGATCGAGTTGT
CACTGTTTTTGCTTGCTGCCTGTCTCTTCTACGAATTTGTCATATCTCGT
CCGGACATCTTCTCTATCGTTCAAGGCTCTGTTGTACCCAGTTTGGGACC
AGACCCCACCCAGGGTGCAATTCTTGGCGTCGGTATACTCGGAAGCGTGG
TCATGGCTCACAACCTTTTCTTGCATAGCTGGCTCGTGTACGATCGAAAC
AAGGAAGATGATATGCTGTCGGATTATCCTTTGCAGATCCCTGGCATCAC
GCGCTACCTGCGCCAAAGTTGTCGTTATGCCACCATCGAAGCGGGCGCAA
TTTTCGTCGCCACTTACCTTATTAACACTTGCGTCGTTGCCATCACTGCT
TCCTTACCGGAGAAGAGCCTACGATCTATCTCATCTATTGGTCTCCAGGA
CGCTGGCGCTCTTCTGTCGTCAATACTGGGAGCCAAGTTTGCCTCTACGG
CGTGGGCGATCGCTTTGCTTTGTAGTGGCCATGCTGCTACCGTTACCGGT
GCGTTAGCGAGCCAGGCGGTTTGTGAGGGCTTCCTCAACATTCAAGGCCG
ACAGACTTCCCTGGTCATCCTAGCCACGCGCGCTATTGCTATTCTGCCCG
CTATGGTTGCCGCACTTGCCGCTGGCGAGGCAAGTGCGAATAAGCTTGTG
GTACTCTCTCAAGTAATTTTGTCGCTCGCGCTCCCGTTTGCCGTTATCCC
CATGTTCAAGCTCCTGGTTAGTGTTGACCGAATATCTCACAACAGTGTTC
TGAACAAGAAGATGTTAGCGGGAGGCTATGTGGCGTTTGCGTTTTTGATG
GCCGCAAACATATATGTTTTCTACGATATGGTGATCGAGATCAACCAGCT
TTTCGGTTGCTTTGCGGCGTTCGGCGTTTGTCTTCTTGCGCTATTCTCTG
TTTATTTGATAGCGAAGATTGTTGTCACTCCGATTGATTTCTCTGAATTA
TCAACACCGGCAGAATGGATGTGGGATACTAAGGAAACAAGCCCATTACT
TAACTAA
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