Ggra4853.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4853.t1
Unique Name	Ggra4853.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:288467..289468 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_03154T0
PFAMs	2OG-FeII_Oxy,DIOX_N
Max annot lvl	4751\|Fungi
Evalue	2.84e-55
EggNOG OGs	COG3491@1\|root,KOG0143@2759\|Eukaryota,3A0I9@33154\|Opisthokonta,3Q34N@4751\|Fungi
Description	non-haem dioxygenase in morphine synthesis N-terminal
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4853	Ggra4853	Gracilaria gracilis GNS1m male	gene	tig00000090_pilon 288467..289468 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4853.t1.stop1	Ggra4853.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000090_pilon 288467..288469 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4853.t1.CDS1	Ggra4853.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000090_pilon 288467..289468 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4853.t1.exon1	Ggra4853.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000090_pilon 288467..289468 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4853.t1.start1	Ggra4853.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000090_pilon 289466..289468 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4853.t1	Ggra4853.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000090_pilon 288467..289468 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000090_pilon:288467..289468-
coding sequence from alignment at tig00000090_pilon:288467..289468-

mRNA sequence

>Ggra4853.t1 ID=Ggra4853.t1|Name=Ggra4853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MNQNAELPVIDVNELFTVSTEKLSYQHDIGEQLVCAFEQTGLAYLRFSGE
SQRLFKGAILPAIQSLQSFFHQPASLKNLSVRTDLPPGVSRGYLAHAAES
GSDALEWKEGYSWSCEWQNGQKPSNKFEAYNIWPQKGAQMRENLAQAFEF
MFKVAKLLSRAIGEVFKDSCLLDLESLCDAGKSLSLMRAFHYFEKNVDRI
ATGSSAHTDWGFITLVAQQDETESALQAYLDGVWKDIPPIPNTVVVNCSD
FLSLLTKGRLRSPLHRVELTTTERISLVYFQYPGYSTSMPEGIVEGLSLL
KDQSPGGDRQTLATKNKCFGDFITEKWAQVSRV*

spliced messenger RNA

>Ggra4853.t1 ID=Ggra4853.t1|Name=Ggra4853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000090_pilon:288467..289468- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCAGAACGCCGAATTACCGGTAATCGACGTCAACGAACTCTTTAC
TGTGTCAACAGAGAAGCTCTCATATCAGCATGACATTGGTGAACAGCTGG
TCTGCGCTTTTGAACAAACAGGTTTAGCTTACCTGCGCTTCAGCGGAGAA
AGCCAACGTCTTTTTAAAGGAGCCATTCTTCCTGCGATACAGTCACTTCA
GTCATTCTTTCACCAGCCAGCATCCTTGAAGAACCTGTCGGTTCGAACAG
ACCTTCCGCCGGGAGTGAGCCGTGGTTATCTCGCTCATGCGGCCGAGTCT
GGGTCAGATGCGCTGGAATGGAAAGAGGGTTACAGTTGGTCGTGTGAATG
GCAAAACGGACAGAAACCATCAAACAAGTTCGAAGCATACAACATATGGC
CGCAAAAAGGTGCTCAGATGCGAGAAAATTTGGCTCAAGCGTTTGAGTTC
ATGTTCAAAGTTGCTAAACTATTGAGTCGAGCGATTGGCGAAGTTTTCAA
AGATTCATGCCTACTAGATCTGGAGTCTTTATGCGATGCGGGAAAGTCTT
TATCGCTGATGCGAGCCTTCCACTACTTTGAGAAAAATGTCGATCGAATC
GCTACTGGTTCCAGCGCTCATACGGATTGGGGGTTCATAACATTGGTTGC
TCAGCAAGACGAAACAGAAAGTGCATTACAAGCGTATCTTGATGGGGTGT
GGAAGGACATTCCACCGATCCCGAACACAGTTGTCGTGAACTGTTCTGAC
TTCCTATCATTGCTTACCAAAGGACGCTTACGAAGTCCGTTGCATCGAGT
GGAACTAACAACCACAGAACGAATAAGCTTGGTTTACTTCCAATATCCGG
GATACAGCACCTCCATGCCGGAAGGAATTGTTGAGGGCTTGAGTTTACTG
AAAGATCAGAGCCCCGGAGGAGATAGACAAACGTTGGCGACGAAAAACAA
GTGTTTCGGGGATTTTATCACTGAGAAGTGGGCGCAAGTCAGTCGGGTGT
AG

protein sequence of Ggra4853.t1

>Ggra4853.t1 ID=Ggra4853.t1|Name=Ggra4853.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MNQNAELPVIDVNELFTVSTEKLSYQHDIGEQLVCAFEQTGLAYLRFSGE
SQRLFKGAILPAIQSLQSFFHQPASLKNLSVRTDLPPGVSRGYLAHAAES
GSDALEWKEGYSWSCEWQNGQKPSNKFEAYNIWPQKGAQMRENLAQAFEF
MFKVAKLLSRAIGEVFKDSCLLDLESLCDAGKSLSLMRAFHYFEKNVDRI
ATGSSAHTDWGFITLVAQQDETESALQAYLDGVWKDIPPIPNTVVVNCSD
FLSLLTKGRLRSPLHRVELTTTERISLVYFQYPGYSTSMPEGIVEGLSLL
KDQSPGGDRQTLATKNKCFGDFITEKWAQVSRV*

mRNA from alignment at tig00000090_pilon:288467..289468-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4853.t1 ID=Ggra4853.t1|Name=Ggra4853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000090_pilon:288467..289468- (Gracilaria gracilis GNS1m male)
ATGAACCAGAACGCCGAATTACCGGTAATCGACGTCAACGAACTCTTTAC
TGTGTCAACAGAGAAGCTCTCATATCAGCATGACATTGGTGAACAGCTGG
TCTGCGCTTTTGAACAAACAGGTTTAGCTTACCTGCGCTTCAGCGGAGAA
AGCCAACGTCTTTTTAAAGGAGCCATTCTTCCTGCGATACAGTCACTTCA
GTCATTCTTTCACCAGCCAGCATCCTTGAAGAACCTGTCGGTTCGAACAG
ACCTTCCGCCGGGAGTGAGCCGTGGTTATCTCGCTCATGCGGCCGAGTCT
GGGTCAGATGCGCTGGAATGGAAAGAGGGTTACAGTTGGTCGTGTGAATG
GCAAAACGGACAGAAACCATCAAACAAGTTCGAAGCATACAACATATGGC
CGCAAAAAGGTGCTCAGATGCGAGAAAATTTGGCTCAAGCGTTTGAGTTC
ATGTTCAAAGTTGCTAAACTATTGAGTCGAGCGATTGGCGAAGTTTTCAA
AGATTCATGCCTACTAGATCTGGAGTCTTTATGCGATGCGGGAAAGTCTT
TATCGCTGATGCGAGCCTTCCACTACTTTGAGAAAAATGTCGATCGAATC
GCTACTGGTTCCAGCGCTCATACGGATTGGGGGTTCATAACATTGGTTGC
TCAGCAAGACGAAACAGAAAGTGCATTACAAGCGTATCTTGATGGGGTGT
GGAAGGACATTCCACCGATCCCGAACACAGTTGTCGTGAACTGTTCTGAC
TTCCTATCATTGCTTACCAAAGGACGCTTACGAAGTCCGTTGCATCGAGT
GGAACTAACAACCACAGAACGAATAAGCTTGGTTTACTTCCAATATCCGG
GATACAGCACCTCCATGCCGGAAGGAATTGTTGAGGGCTTGAGTTTACTG
AAAGATCAGAGCCCCGGAGGAGATAGACAAACGTTGGCGACGAAAAACAA
GTGTTTCGGGGATTTTATCACTGAGAAGTGGGCGCAAGTCAGTCGGGTGT
AG

Coding sequence (CDS) from alignment at tig00000090_pilon:288467..289468-

>Ggra4853.t1 ID=Ggra4853.t1|Name=Ggra4853.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000090_pilon:288467..289468- (Gracilaria gracilis GNS1m male)
ATGAACCAGAACGCCGAATTACCGGTAATCGACGTCAACGAACTCTTTAC
TGTGTCAACAGAGAAGCTCTCATATCAGCATGACATTGGTGAACAGCTGG
TCTGCGCTTTTGAACAAACAGGTTTAGCTTACCTGCGCTTCAGCGGAGAA
AGCCAACGTCTTTTTAAAGGAGCCATTCTTCCTGCGATACAGTCACTTCA
GTCATTCTTTCACCAGCCAGCATCCTTGAAGAACCTGTCGGTTCGAACAG
ACCTTCCGCCGGGAGTGAGCCGTGGTTATCTCGCTCATGCGGCCGAGTCT
GGGTCAGATGCGCTGGAATGGAAAGAGGGTTACAGTTGGTCGTGTGAATG
GCAAAACGGACAGAAACCATCAAACAAGTTCGAAGCATACAACATATGGC
CGCAAAAAGGTGCTCAGATGCGAGAAAATTTGGCTCAAGCGTTTGAGTTC
ATGTTCAAAGTTGCTAAACTATTGAGTCGAGCGATTGGCGAAGTTTTCAA
AGATTCATGCCTACTAGATCTGGAGTCTTTATGCGATGCGGGAAAGTCTT
TATCGCTGATGCGAGCCTTCCACTACTTTGAGAAAAATGTCGATCGAATC
GCTACTGGTTCCAGCGCTCATACGGATTGGGGGTTCATAACATTGGTTGC
TCAGCAAGACGAAACAGAAAGTGCATTACAAGCGTATCTTGATGGGGTGT
GGAAGGACATTCCACCGATCCCGAACACAGTTGTCGTGAACTGTTCTGAC
TTCCTATCATTGCTTACCAAAGGACGCTTACGAAGTCCGTTGCATCGAGT
GGAACTAACAACCACAGAACGAATAAGCTTGGTTTACTTCCAATATCCGG
GATACAGCACCTCCATGCCGGAAGGAATTGTTGAGGGCTTGAGTTTACTG
AAAGATCAGAGCCCCGGAGGAGATAGACAAACGTTGGCGACGAAAAACAA
GTGTTTCGGGGATTTTATCACTGAGAAGTGGGCGCAAGTCAGTCGGGTGT
AG