Ggra4851.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4851.t1
Unique NameGgra4851.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:283286..284650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM166CT
Preferred namePSY
PFAMsSQS_PSY
Max annot lvl2759|Eukaryota
KEGG rclassRC00362,RC00438,RC00439,RC00603,RC00604,RC01004,RC01101,RC02869
KEGG koko:K01623,ko:K02291,ko:K17841
KEGG ReactionR01068,R01070,R01829,R02065,R02568,R03824,R04218,R05341,R07270,R10177,R10508
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko00906,ko01062,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map00906,map01062,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00097,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016740,GO:0016765,GO:0016767,GO:0016853,GO:0016860,GO:0042214,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0046246,GO:0046905,GO:0071704,GO:1901576
Evalue5.85e-125
EggNOG OGsCOG1562@1|root,KOG1459@2759|Eukaryota
EC2.5.1.32,2.5.1.99,4.1.2.13,5.5.1.19
Descriptionfarnesyl-diphosphate farnesyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4851Ggra4851Gracilaria gracilis GNS1m malegenetig00000090_pilon 283286..284650 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4851.t1.stop1Ggra4851.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 283286..283288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4851.t1.CDS1Ggra4851.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 283286..284650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4851.t1.exon1Ggra4851.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 283286..284650 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4851.t1.start1Ggra4851.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 284648..284650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4851.t1Ggra4851.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 283286..284650 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4851.t1 ID=Ggra4851.t1|Name=Ggra4851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MAFAPVSTWVHSVPLPAHSRTSSRPISRPPSQRYAFNMVMDKPMNPSTSV
SWGNYQIESFDTLHTRLGIDKLWQLESEKHSEAIHKSSKAAALEETHDDI
LVTGDEMLSTQSVLPWDTTTGVRTLSYLGRQVFFLRKRQQLLKTSYEECR
RITEVFSKTFYLGTTFLSPVKRAAVWAIYAWCRRTDDLVDGPRVQQRHDH
LRAVLAEWEQRLISIFNGQARDSLDLALADAIEQNPDITMSPFRDMIRGM
LMDVDQSRFETFDDLYVYCYRVAGTVGLMTLPVMGTVKPGREGLREAMGP
ALALGIGLQLTNILRDVGEDRLRGRIYLPLEDLRRFNYTEEDLFNCVLDS
RYRELMKFEIARARSYFDEARKGVKLLAEDSRLPVQTSLDMYSQILDVLE
ENGYDNFNRRAYVSKTQKLVTLPVSYLRCRTSEAWKPIRIAAEFLLGVKQ
ITNL*
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spliced messenger RNA

>Ggra4851.t1 ID=Ggra4851.t1|Name=Ggra4851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000090_pilon:283286..284650- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGCTCCAGTTTCCACATGGGTGCATTCGGTTCCCCTCCCCGC
CCACTCCAGGACGTCGTCTCGCCCCATTTCACGCCCACCCTCTCAACGGT
ATGCGTTCAATATGGTAATGGACAAACCTATGAATCCGAGCACCAGTGTC
AGCTGGGGCAACTACCAAATTGAGAGCTTCGACACATTGCATACCAGACT
CGGCATCGACAAGCTGTGGCAGTTGGAATCGGAGAAGCATTCTGAAGCTA
TTCATAAATCGAGCAAAGCTGCTGCGTTGGAAGAAACCCATGATGACATC
CTCGTCACTGGCGATGAAATGCTTTCAACGCAGTCCGTACTACCGTGGGA
TACCACCACCGGTGTTCGCACTCTCAGCTATTTAGGTCGTCAAGTGTTCT
TTCTCCGCAAGCGCCAGCAGCTGTTGAAAACCAGTTATGAGGAATGTCGC
CGTATCACTGAAGTTTTTTCGAAGACGTTTTACCTCGGAACCACATTTCT
GTCTCCTGTGAAACGTGCTGCTGTGTGGGCGATTTATGCGTGGTGCAGGC
GAACGGATGACCTTGTTGACGGCCCGCGTGTGCAGCAACGACACGATCAC
CTACGAGCCGTTTTAGCGGAATGGGAACAGCGTCTCATTTCAATATTCAA
TGGTCAAGCGAGAGACAGCCTTGATCTTGCGCTGGCTGATGCCATTGAAC
AAAACCCAGACATCACGATGTCCCCGTTTCGCGACATGATTCGAGGCATG
TTGATGGACGTAGATCAATCACGCTTTGAGACGTTTGACGATCTCTACGT
GTATTGCTATCGCGTCGCAGGTACAGTTGGGCTCATGACGTTGCCAGTGA
TGGGAACTGTTAAACCCGGTCGTGAAGGCCTTCGAGAAGCAATGGGACCT
GCTCTAGCCCTTGGCATTGGTTTGCAGTTGACCAATATCTTGCGTGACGT
CGGCGAAGACCGGTTGCGAGGTCGCATCTACCTACCACTGGAAGATCTGC
GACGCTTCAACTACACAGAGGAAGACCTCTTCAACTGCGTTTTGGACTCG
AGATATCGCGAGCTTATGAAGTTCGAGATCGCAAGAGCTCGAAGCTATTT
TGATGAAGCTCGCAAAGGAGTCAAGTTATTGGCAGAAGACTCTAGACTTC
CTGTTCAAACGTCCCTCGACATGTACTCGCAGATTCTGGACGTTTTGGAA
GAAAACGGGTATGACAATTTCAACAGACGAGCGTATGTTTCGAAGACCCA
AAAGCTTGTCACATTGCCTGTTAGCTACCTGCGGTGTCGAACATCCGAAG
CATGGAAGCCAATACGCATTGCTGCTGAGTTTTTACTTGGAGTCAAGCAG
ATAACAAATCTGTAG
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protein sequence of Ggra4851.t1

>Ggra4851.t1 ID=Ggra4851.t1|Name=Ggra4851.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MAFAPVSTWVHSVPLPAHSRTSSRPISRPPSQRYAFNMVMDKPMNPSTSV
SWGNYQIESFDTLHTRLGIDKLWQLESEKHSEAIHKSSKAAALEETHDDI
LVTGDEMLSTQSVLPWDTTTGVRTLSYLGRQVFFLRKRQQLLKTSYEECR
RITEVFSKTFYLGTTFLSPVKRAAVWAIYAWCRRTDDLVDGPRVQQRHDH
LRAVLAEWEQRLISIFNGQARDSLDLALADAIEQNPDITMSPFRDMIRGM
LMDVDQSRFETFDDLYVYCYRVAGTVGLMTLPVMGTVKPGREGLREAMGP
ALALGIGLQLTNILRDVGEDRLRGRIYLPLEDLRRFNYTEEDLFNCVLDS
RYRELMKFEIARARSYFDEARKGVKLLAEDSRLPVQTSLDMYSQILDVLE
ENGYDNFNRRAYVSKTQKLVTLPVSYLRCRTSEAWKPIRIAAEFLLGVKQ
ITNL*
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mRNA from alignment at tig00000090_pilon:283286..284650-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4851.t1 ID=Ggra4851.t1|Name=Ggra4851.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000090_pilon:283286..284650- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGCTCCAGTTTCCACATGGGTGCATTCGGTTCCCCTCCCCGC
CCACTCCAGGACGTCGTCTCGCCCCATTTCACGCCCACCCTCTCAACGGT
ATGCGTTCAATATGGTAATGGACAAACCTATGAATCCGAGCACCAGTGTC
AGCTGGGGCAACTACCAAATTGAGAGCTTCGACACATTGCATACCAGACT
CGGCATCGACAAGCTGTGGCAGTTGGAATCGGAGAAGCATTCTGAAGCTA
TTCATAAATCGAGCAAAGCTGCTGCGTTGGAAGAAACCCATGATGACATC
CTCGTCACTGGCGATGAAATGCTTTCAACGCAGTCCGTACTACCGTGGGA
TACCACCACCGGTGTTCGCACTCTCAGCTATTTAGGTCGTCAAGTGTTCT
TTCTCCGCAAGCGCCAGCAGCTGTTGAAAACCAGTTATGAGGAATGTCGC
CGTATCACTGAAGTTTTTTCGAAGACGTTTTACCTCGGAACCACATTTCT
GTCTCCTGTGAAACGTGCTGCTGTGTGGGCGATTTATGCGTGGTGCAGGC
GAACGGATGACCTTGTTGACGGCCCGCGTGTGCAGCAACGACACGATCAC
CTACGAGCCGTTTTAGCGGAATGGGAACAGCGTCTCATTTCAATATTCAA
TGGTCAAGCGAGAGACAGCCTTGATCTTGCGCTGGCTGATGCCATTGAAC
AAAACCCAGACATCACGATGTCCCCGTTTCGCGACATGATTCGAGGCATG
TTGATGGACGTAGATCAATCACGCTTTGAGACGTTTGACGATCTCTACGT
GTATTGCTATCGCGTCGCAGGTACAGTTGGGCTCATGACGTTGCCAGTGA
TGGGAACTGTTAAACCCGGTCGTGAAGGCCTTCGAGAAGCAATGGGACCT
GCTCTAGCCCTTGGCATTGGTTTGCAGTTGACCAATATCTTGCGTGACGT
CGGCGAAGACCGGTTGCGAGGTCGCATCTACCTACCACTGGAAGATCTGC
GACGCTTCAACTACACAGAGGAAGACCTCTTCAACTGCGTTTTGGACTCG
AGATATCGCGAGCTTATGAAGTTCGAGATCGCAAGAGCTCGAAGCTATTT
TGATGAAGCTCGCAAAGGAGTCAAGTTATTGGCAGAAGACTCTAGACTTC
CTGTTCAAACGTCCCTCGACATGTACTCGCAGATTCTGGACGTTTTGGAA
GAAAACGGGTATGACAATTTCAACAGACGAGCGTATGTTTCGAAGACCCA
AAAGCTTGTCACATTGCCTGTTAGCTACCTGCGGTGTCGAACATCCGAAG
CATGGAAGCCAATACGCATTGCTGCTGAGTTTTTACTTGGAGTCAAGCAG
ATAACAAATCTGTAG
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Coding sequence (CDS) from alignment at tig00000090_pilon:283286..284650-

>Ggra4851.t1 ID=Ggra4851.t1|Name=Ggra4851.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000090_pilon:283286..284650- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGCTCCAGTTTCCACATGGGTGCATTCGGTTCCCCTCCCCGC
CCACTCCAGGACGTCGTCTCGCCCCATTTCACGCCCACCCTCTCAACGGT
ATGCGTTCAATATGGTAATGGACAAACCTATGAATCCGAGCACCAGTGTC
AGCTGGGGCAACTACCAAATTGAGAGCTTCGACACATTGCATACCAGACT
CGGCATCGACAAGCTGTGGCAGTTGGAATCGGAGAAGCATTCTGAAGCTA
TTCATAAATCGAGCAAAGCTGCTGCGTTGGAAGAAACCCATGATGACATC
CTCGTCACTGGCGATGAAATGCTTTCAACGCAGTCCGTACTACCGTGGGA
TACCACCACCGGTGTTCGCACTCTCAGCTATTTAGGTCGTCAAGTGTTCT
TTCTCCGCAAGCGCCAGCAGCTGTTGAAAACCAGTTATGAGGAATGTCGC
CGTATCACTGAAGTTTTTTCGAAGACGTTTTACCTCGGAACCACATTTCT
GTCTCCTGTGAAACGTGCTGCTGTGTGGGCGATTTATGCGTGGTGCAGGC
GAACGGATGACCTTGTTGACGGCCCGCGTGTGCAGCAACGACACGATCAC
CTACGAGCCGTTTTAGCGGAATGGGAACAGCGTCTCATTTCAATATTCAA
TGGTCAAGCGAGAGACAGCCTTGATCTTGCGCTGGCTGATGCCATTGAAC
AAAACCCAGACATCACGATGTCCCCGTTTCGCGACATGATTCGAGGCATG
TTGATGGACGTAGATCAATCACGCTTTGAGACGTTTGACGATCTCTACGT
GTATTGCTATCGCGTCGCAGGTACAGTTGGGCTCATGACGTTGCCAGTGA
TGGGAACTGTTAAACCCGGTCGTGAAGGCCTTCGAGAAGCAATGGGACCT
GCTCTAGCCCTTGGCATTGGTTTGCAGTTGACCAATATCTTGCGTGACGT
CGGCGAAGACCGGTTGCGAGGTCGCATCTACCTACCACTGGAAGATCTGC
GACGCTTCAACTACACAGAGGAAGACCTCTTCAACTGCGTTTTGGACTCG
AGATATCGCGAGCTTATGAAGTTCGAGATCGCAAGAGCTCGAAGCTATTT
TGATGAAGCTCGCAAAGGAGTCAAGTTATTGGCAGAAGACTCTAGACTTC
CTGTTCAAACGTCCCTCGACATGTACTCGCAGATTCTGGACGTTTTGGAA
GAAAACGGGTATGACAATTTCAACAGACGAGCGTATGTTTCGAAGACCCA
AAAGCTTGTCACATTGCCTGTTAGCTACCTGCGGTGTCGAACATCCGAAG
CATGGAAGCCAATACGCATTGCTGCTGAGTTTTTACTTGGAGTCAAGCAG
ATAACAAATCTGTAG
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