Ggra4824.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4824.t1
Unique Name	Ggra4824.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	729

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:217569..219755 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4824	Ggra4824	Gracilaria gracilis GNS1m male	gene	tig00000090_pilon 217569..219755 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4824.t1.stop1	Ggra4824.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000090_pilon 217569..217571 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4824.t1.CDS1	Ggra4824.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000090_pilon 217569..219755 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4824.t1.exon1	Ggra4824.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000090_pilon 217569..219755 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4824.t1.start1	Ggra4824.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000090_pilon 219753..219755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4824.t1	Ggra4824.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000090_pilon 217569..219755 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000090_pilon:217569..219755-
coding sequence from alignment at tig00000090_pilon:217569..219755-

mRNA sequence

>Ggra4824.t1 ID=Ggra4824.t1|Name=Ggra4824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp
MDVSTRKGFPPPNKSNLYRLLKRFRSILEHNELAIRPTQSNNEETLLKVC
EKLCHRKKLCVRLLKLSGLCVMPEVMQTLHRYRHLRVYSYREYMKADGSI
KQNGGVLNIAFIPPFVISDDAEEQVSIDKNSRLRAGLWKEASRFDWDSRS
RILQLLFVMAAFSATLYGWIGSPECHSPTAAIEIWKRFSDPSFCTTSMPS
EDPSSPQDIRQGWETAVRVIKTNVAELYHEKEKPIPPRLRRWGRQTEFAV
RIADIQERTLTWFAQLVSEMCVMTYDRLGGQYGGLSSFMHPFAAQAETSF
RVLMEREVGVSLGHFEWKTVFSQKKVMNLLSRCQQSGKVMRQASDNSLES
GARHSDREREENRGQQRNSEPNSNENEEYKNGEREEVLSPISPDVDTIRI
AKMIPSEARLRRMDLLNTHPKEVGVSKKGGDVHHSAPEDSIGGSDTDGSA
PIAKEQLPPSSTHGENQKPGFPDKSDHMMSDCNGRAKPIATDLSFPARQD
EARKGATEDMEIGQNGDGKPVSIIREEHAPAVHTEPKQERNRKESAGDQK
RFGRYVGTGRERHTMEDEGQSVVSVPRKKVRVQTNQGNESGEHNEFSTGW
ASVQTRPTLMTEEGKLQNSDREALGIGTTGLPVSNPPVPRGGMNIHDTRK
FGKKQFLSSMCSDVGTSQMPTIQTGVVSESHRKRIAEKIAIQVRREVLLR
RQRSDMVERDGRHMVVPPKKRPKYLDPC*

spliced messenger RNA

>Ggra4824.t1 ID=Ggra4824.t1|Name=Ggra4824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000090_pilon:217569..219755- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTGAGCACCCGCAAAGGCTTTCCACCCCCTAACAAGAGCAACCT
CTATCGTTTGCTCAAACGATTTCGCAGTATATTGGAACATAATGAGTTGG
CCATTCGCCCCACCCAGTCCAACAACGAAGAAACACTTCTTAAAGTATGT
GAAAAGTTATGTCACCGAAAAAAGCTTTGTGTTCGCCTTCTCAAGCTTTC
TGGTTTATGCGTCATGCCTGAAGTCATGCAAACCCTACATAGATACAGGC
ATTTGAGAGTATATAGCTACAGGGAATACATGAAGGCGGATGGAAGTATC
AAACAGAATGGCGGTGTACTCAATATTGCTTTCATCCCGCCTTTCGTTAT
TTCAGACGACGCTGAGGAGCAAGTCTCTATCGACAAGAACTCGCGTCTAC
GGGCAGGCTTGTGGAAGGAGGCATCACGCTTTGACTGGGATTCTAGAAGC
CGCATTTTGCAGCTTCTTTTTGTCATGGCTGCTTTCTCAGCAACTCTGTA
TGGATGGATTGGCAGCCCTGAGTGTCATTCACCTACGGCAGCTATTGAAA
TATGGAAACGCTTCAGCGATCCCAGCTTCTGCACTACTTCTATGCCTTCT
GAAGATCCGAGCAGTCCACAGGATATCAGACAAGGATGGGAAACCGCTGT
CAGAGTGATCAAGACCAACGTTGCCGAGCTTTACCATGAAAAGGAAAAGC
CTATTCCGCCGAGGCTAAGAAGATGGGGCCGCCAAACCGAGTTTGCGGTG
CGCATCGCTGACATTCAGGAACGCACTCTGACATGGTTCGCCCAACTCGT
GTCTGAAATGTGTGTTATGACGTATGACCGTTTAGGAGGGCAATATGGCG
GGTTAAGCAGCTTTATGCACCCTTTTGCTGCTCAAGCTGAGACATCATTC
CGGGTTCTCATGGAAAGGGAAGTTGGCGTTAGCTTGGGGCACTTCGAGTG
GAAGACCGTTTTCTCTCAGAAGAAAGTGATGAATCTTCTCTCTCGTTGTC
AGCAGTCCGGCAAAGTAATGAGACAGGCGTCAGATAATTCCTTAGAGTCC
GGTGCCCGCCATAGTGACAGGGAAAGAGAAGAGAACAGAGGCCAACAAAG
AAACTCGGAGCCAAACAGTAATGAAAACGAAGAGTACAAGAATGGAGAAA
GGGAAGAAGTATTATCTCCCATATCACCAGATGTTGATACCATAAGAATA
GCCAAAATGATTCCTTCAGAAGCGCGTCTACGTCGAATGGATTTATTGAA
CACCCATCCGAAAGAAGTTGGAGTCAGCAAAAAGGGGGGCGACGTCCATC
ATTCTGCGCCCGAAGACAGCATCGGAGGAAGCGACACTGATGGGTCTGCT
CCAATCGCTAAGGAACAACTTCCCCCCTCTAGTACACATGGAGAAAACCA
GAAACCAGGATTTCCGGACAAATCTGACCATATGATGTCAGATTGCAATG
GTCGTGCCAAACCGATCGCTACGGATCTCAGTTTTCCAGCTAGACAGGAT
GAAGCTAGGAAAGGGGCAACGGAAGATATGGAGATTGGTCAAAATGGTGA
CGGCAAACCAGTTAGTATTATTCGTGAAGAACATGCGCCAGCAGTACACA
CAGAACCAAAACAAGAACGAAATCGAAAGGAATCTGCGGGTGATCAGAAA
CGCTTTGGAAGATATGTGGGAACTGGGCGCGAAAGACATACAATGGAAGA
TGAGGGACAATCAGTAGTTAGTGTACCAAGAAAGAAGGTCAGAGTTCAAA
CCAACCAGGGTAACGAATCAGGAGAACACAACGAGTTTTCGACGGGGTGG
GCTTCTGTGCAAACAAGACCGACACTGATGACTGAAGAGGGCAAGCTTCA
GAACTCAGACAGAGAAGCCCTTGGAATTGGAACCACGGGTCTACCGGTCT
CTAATCCGCCTGTGCCAAGAGGAGGCATGAACATTCATGATACTAGAAAG
TTTGGCAAGAAACAGTTTCTATCTTCCATGTGTTCGGATGTTGGAACAAG
TCAGATGCCGACGATACAAACAGGGGTTGTATCTGAATCCCATCGCAAGC
GCATTGCAGAAAAGATTGCCATTCAAGTTAGACGAGAAGTCCTTCTCAGG
CGTCAAAGATCAGACATGGTTGAACGGGATGGGAGGCATATGGTCGTCCC
TCCCAAGAAACGCCCAAAATACTTAGATCCATGTTAG

protein sequence of Ggra4824.t1

>Ggra4824.t1 ID=Ggra4824.t1|Name=Ggra4824.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=729bp
MDVSTRKGFPPPNKSNLYRLLKRFRSILEHNELAIRPTQSNNEETLLKVC
EKLCHRKKLCVRLLKLSGLCVMPEVMQTLHRYRHLRVYSYREYMKADGSI
KQNGGVLNIAFIPPFVISDDAEEQVSIDKNSRLRAGLWKEASRFDWDSRS
RILQLLFVMAAFSATLYGWIGSPECHSPTAAIEIWKRFSDPSFCTTSMPS
EDPSSPQDIRQGWETAVRVIKTNVAELYHEKEKPIPPRLRRWGRQTEFAV
RIADIQERTLTWFAQLVSEMCVMTYDRLGGQYGGLSSFMHPFAAQAETSF
RVLMEREVGVSLGHFEWKTVFSQKKVMNLLSRCQQSGKVMRQASDNSLES
GARHSDREREENRGQQRNSEPNSNENEEYKNGEREEVLSPISPDVDTIRI
AKMIPSEARLRRMDLLNTHPKEVGVSKKGGDVHHSAPEDSIGGSDTDGSA
PIAKEQLPPSSTHGENQKPGFPDKSDHMMSDCNGRAKPIATDLSFPARQD
EARKGATEDMEIGQNGDGKPVSIIREEHAPAVHTEPKQERNRKESAGDQK
RFGRYVGTGRERHTMEDEGQSVVSVPRKKVRVQTNQGNESGEHNEFSTGW
ASVQTRPTLMTEEGKLQNSDREALGIGTTGLPVSNPPVPRGGMNIHDTRK
FGKKQFLSSMCSDVGTSQMPTIQTGVVSESHRKRIAEKIAIQVRREVLLR
RQRSDMVERDGRHMVVPPKKRPKYLDPC*

mRNA from alignment at tig00000090_pilon:217569..219755-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4824.t1 ID=Ggra4824.t1|Name=Ggra4824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000090_pilon:217569..219755- (Gracilaria gracilis GNS1m male)
ATGGATGTGAGCACCCGCAAAGGCTTTCCACCCCCTAACAAGAGCAACCT
CTATCGTTTGCTCAAACGATTTCGCAGTATATTGGAACATAATGAGTTGG
CCATTCGCCCCACCCAGTCCAACAACGAAGAAACACTTCTTAAAGTATGT
GAAAAGTTATGTCACCGAAAAAAGCTTTGTGTTCGCCTTCTCAAGCTTTC
TGGTTTATGCGTCATGCCTGAAGTCATGCAAACCCTACATAGATACAGGC
ATTTGAGAGTATATAGCTACAGGGAATACATGAAGGCGGATGGAAGTATC
AAACAGAATGGCGGTGTACTCAATATTGCTTTCATCCCGCCTTTCGTTAT
TTCAGACGACGCTGAGGAGCAAGTCTCTATCGACAAGAACTCGCGTCTAC
GGGCAGGCTTGTGGAAGGAGGCATCACGCTTTGACTGGGATTCTAGAAGC
CGCATTTTGCAGCTTCTTTTTGTCATGGCTGCTTTCTCAGCAACTCTGTA
TGGATGGATTGGCAGCCCTGAGTGTCATTCACCTACGGCAGCTATTGAAA
TATGGAAACGCTTCAGCGATCCCAGCTTCTGCACTACTTCTATGCCTTCT
GAAGATCCGAGCAGTCCACAGGATATCAGACAAGGATGGGAAACCGCTGT
CAGAGTGATCAAGACCAACGTTGCCGAGCTTTACCATGAAAAGGAAAAGC
CTATTCCGCCGAGGCTAAGAAGATGGGGCCGCCAAACCGAGTTTGCGGTG
CGCATCGCTGACATTCAGGAACGCACTCTGACATGGTTCGCCCAACTCGT
GTCTGAAATGTGTGTTATGACGTATGACCGTTTAGGAGGGCAATATGGCG
GGTTAAGCAGCTTTATGCACCCTTTTGCTGCTCAAGCTGAGACATCATTC
CGGGTTCTCATGGAAAGGGAAGTTGGCGTTAGCTTGGGGCACTTCGAGTG
GAAGACCGTTTTCTCTCAGAAGAAAGTGATGAATCTTCTCTCTCGTTGTC
AGCAGTCCGGCAAAGTAATGAGACAGGCGTCAGATAATTCCTTAGAGTCC
GGTGCCCGCCATAGTGACAGGGAAAGAGAAGAGAACAGAGGCCAACAAAG
AAACTCGGAGCCAAACAGTAATGAAAACGAAGAGTACAAGAATGGAGAAA
GGGAAGAAGTATTATCTCCCATATCACCAGATGTTGATACCATAAGAATA
GCCAAAATGATTCCTTCAGAAGCGCGTCTACGTCGAATGGATTTATTGAA
CACCCATCCGAAAGAAGTTGGAGTCAGCAAAAAGGGGGGCGACGTCCATC
ATTCTGCGCCCGAAGACAGCATCGGAGGAAGCGACACTGATGGGTCTGCT
CCAATCGCTAAGGAACAACTTCCCCCCTCTAGTACACATGGAGAAAACCA
GAAACCAGGATTTCCGGACAAATCTGACCATATGATGTCAGATTGCAATG
GTCGTGCCAAACCGATCGCTACGGATCTCAGTTTTCCAGCTAGACAGGAT
GAAGCTAGGAAAGGGGCAACGGAAGATATGGAGATTGGTCAAAATGGTGA
CGGCAAACCAGTTAGTATTATTCGTGAAGAACATGCGCCAGCAGTACACA
CAGAACCAAAACAAGAACGAAATCGAAAGGAATCTGCGGGTGATCAGAAA
CGCTTTGGAAGATATGTGGGAACTGGGCGCGAAAGACATACAATGGAAGA
TGAGGGACAATCAGTAGTTAGTGTACCAAGAAAGAAGGTCAGAGTTCAAA
CCAACCAGGGTAACGAATCAGGAGAACACAACGAGTTTTCGACGGGGTGG
GCTTCTGTGCAAACAAGACCGACACTGATGACTGAAGAGGGCAAGCTTCA
GAACTCAGACAGAGAAGCCCTTGGAATTGGAACCACGGGTCTACCGGTCT
CTAATCCGCCTGTGCCAAGAGGAGGCATGAACATTCATGATACTAGAAAG
TTTGGCAAGAAACAGTTTCTATCTTCCATGTGTTCGGATGTTGGAACAAG
TCAGATGCCGACGATACAAACAGGGGTTGTATCTGAATCCCATCGCAAGC
GCATTGCAGAAAAGATTGCCATTCAAGTTAGACGAGAAGTCCTTCTCAGG
CGTCAAAGATCAGACATGGTTGAACGGGATGGGAGGCATATGGTCGTCCC
TCCCAAGAAACGCCCAAAATACTTAGATCCATGTTAG

Coding sequence (CDS) from alignment at tig00000090_pilon:217569..219755-

>Ggra4824.t1 ID=Ggra4824.t1|Name=Ggra4824.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2187bp|location=Sequence derived from alignment at tig00000090_pilon:217569..219755- (Gracilaria gracilis GNS1m male)
ATGGATGTGAGCACCCGCAAAGGCTTTCCACCCCCTAACAAGAGCAACCT
CTATCGTTTGCTCAAACGATTTCGCAGTATATTGGAACATAATGAGTTGG
CCATTCGCCCCACCCAGTCCAACAACGAAGAAACACTTCTTAAAGTATGT
GAAAAGTTATGTCACCGAAAAAAGCTTTGTGTTCGCCTTCTCAAGCTTTC
TGGTTTATGCGTCATGCCTGAAGTCATGCAAACCCTACATAGATACAGGC
ATTTGAGAGTATATAGCTACAGGGAATACATGAAGGCGGATGGAAGTATC
AAACAGAATGGCGGTGTACTCAATATTGCTTTCATCCCGCCTTTCGTTAT
TTCAGACGACGCTGAGGAGCAAGTCTCTATCGACAAGAACTCGCGTCTAC
GGGCAGGCTTGTGGAAGGAGGCATCACGCTTTGACTGGGATTCTAGAAGC
CGCATTTTGCAGCTTCTTTTTGTCATGGCTGCTTTCTCAGCAACTCTGTA
TGGATGGATTGGCAGCCCTGAGTGTCATTCACCTACGGCAGCTATTGAAA
TATGGAAACGCTTCAGCGATCCCAGCTTCTGCACTACTTCTATGCCTTCT
GAAGATCCGAGCAGTCCACAGGATATCAGACAAGGATGGGAAACCGCTGT
CAGAGTGATCAAGACCAACGTTGCCGAGCTTTACCATGAAAAGGAAAAGC
CTATTCCGCCGAGGCTAAGAAGATGGGGCCGCCAAACCGAGTTTGCGGTG
CGCATCGCTGACATTCAGGAACGCACTCTGACATGGTTCGCCCAACTCGT
GTCTGAAATGTGTGTTATGACGTATGACCGTTTAGGAGGGCAATATGGCG
GGTTAAGCAGCTTTATGCACCCTTTTGCTGCTCAAGCTGAGACATCATTC
CGGGTTCTCATGGAAAGGGAAGTTGGCGTTAGCTTGGGGCACTTCGAGTG
GAAGACCGTTTTCTCTCAGAAGAAAGTGATGAATCTTCTCTCTCGTTGTC
AGCAGTCCGGCAAAGTAATGAGACAGGCGTCAGATAATTCCTTAGAGTCC
GGTGCCCGCCATAGTGACAGGGAAAGAGAAGAGAACAGAGGCCAACAAAG
AAACTCGGAGCCAAACAGTAATGAAAACGAAGAGTACAAGAATGGAGAAA
GGGAAGAAGTATTATCTCCCATATCACCAGATGTTGATACCATAAGAATA
GCCAAAATGATTCCTTCAGAAGCGCGTCTACGTCGAATGGATTTATTGAA
CACCCATCCGAAAGAAGTTGGAGTCAGCAAAAAGGGGGGCGACGTCCATC
ATTCTGCGCCCGAAGACAGCATCGGAGGAAGCGACACTGATGGGTCTGCT
CCAATCGCTAAGGAACAACTTCCCCCCTCTAGTACACATGGAGAAAACCA
GAAACCAGGATTTCCGGACAAATCTGACCATATGATGTCAGATTGCAATG
GTCGTGCCAAACCGATCGCTACGGATCTCAGTTTTCCAGCTAGACAGGAT
GAAGCTAGGAAAGGGGCAACGGAAGATATGGAGATTGGTCAAAATGGTGA
CGGCAAACCAGTTAGTATTATTCGTGAAGAACATGCGCCAGCAGTACACA
CAGAACCAAAACAAGAACGAAATCGAAAGGAATCTGCGGGTGATCAGAAA
CGCTTTGGAAGATATGTGGGAACTGGGCGCGAAAGACATACAATGGAAGA
TGAGGGACAATCAGTAGTTAGTGTACCAAGAAAGAAGGTCAGAGTTCAAA
CCAACCAGGGTAACGAATCAGGAGAACACAACGAGTTTTCGACGGGGTGG
GCTTCTGTGCAAACAAGACCGACACTGATGACTGAAGAGGGCAAGCTTCA
GAACTCAGACAGAGAAGCCCTTGGAATTGGAACCACGGGTCTACCGGTCT
CTAATCCGCCTGTGCCAAGAGGAGGCATGAACATTCATGATACTAGAAAG
TTTGGCAAGAAACAGTTTCTATCTTCCATGTGTTCGGATGTTGGAACAAG
TCAGATGCCGACGATACAAACAGGGGTTGTATCTGAATCCCATCGCAAGC
GCATTGCAGAAAAGATTGCCATTCAAGTTAGACGAGAAGTCCTTCTCAGG
CGTCAAAGATCAGACATGGTTGAACGGGATGGGAGGCATATGGTCGTCCC
TCCCAAGAAACGCCCAAAATACTTAGATCCATGTTAG