Ggra4855.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4855.t1
Unique NameGgra4855.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:291622..292098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP09049
PFAMsComplex1_LYR
Max annot lvl3041|Chlorophyta
KEGG koko:K22069
Evalue3.96e-06
EggNOG OGs2DISQ@1|root,2SD8U@2759|Eukaryota,37XP1@33090|Viridiplantae,34ITC@3041|Chlorophyta
DescriptionBelongs to the complex I LYR family
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4855Ggra4855Gracilaria gracilis GNS1m malegenetig00000090_pilon 291622..292098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4855.t1Ggra4855.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 291622..292098 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4855.t1.stop1Ggra4855.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 291622..291624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4855.t1.CDS1Ggra4855.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 291622..291764 -
Ggra4855.t1.CDS2Ggra4855.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 291984..292098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4855.t1.exon1Ggra4855.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 291622..291764 -
Ggra4855.t1.exon2Ggra4855.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 291984..292098 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4855.t1.intron1Ggra4855.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 291765..291983 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4855.t1.start1Ggra4855.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 292096..292098 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4855.t1 ID=Ggra4855.t1|Name=Ggra4855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=86bp
MTAPPSSKHVLTLYRHLLRAVRFYPSKKRDSLAQAIREEFRENRNISGEQ
LEKALWLGHMELQRLEKWVPTSKQMTDGKDMDIKL*
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spliced messenger RNA

>Ggra4855.t1 ID=Ggra4855.t1|Name=Ggra4855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000090_pilon:291622..292098- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCCCTCCGTCGTCCAAGCACGTCCTCACCTTATATCGCCACTT
ATTACGCGCTGTGCGCTTTTACCCTAGCAAAAAGAGGGACTCCCTGGCGC
AAGCCATCAGAGAAGAATTCAGGGAGAACCGCAACATTTCGGGCGAACAG
CTCGAGAAAGCTCTGTGGCTGGGCCACATGGAGCTGCAGCGCCTAGAAAA
ATGGGTCCCGACCAGTAAACAGATGACCGATGGTAAAGACATGGACATCA
AACTGTAG
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protein sequence of Ggra4855.t1

>Ggra4855.t1 ID=Ggra4855.t1|Name=Ggra4855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=86bp
MTAPPSSKHVLTLYRHLLRAVRFYPSKKRDSLAQAIREEFRENRNISGEQ
LEKALWLGHMELQRLEKWVPTSKQMTDGKDMDIKL*
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mRNA from alignment at tig00000090_pilon:291622..292098-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4855.t1 ID=Ggra4855.t1|Name=Ggra4855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000090_pilon:291622..292098- (Gracilaria gracilis GNS1m male)
ATGACCGCCCCTCCGTCGTCCAAGCACGTCCTCACCTTATATCGCCACTT
ATTACGCGCTGTGCGCTTTTACCCTAGCAAAAAGAGGGACTCCCTGGCGC
AAGCCATCAGAGAAGGTGTGTGCTAATTTGCTAATTCTACCCCGTCACAT
CCCTGTCAATGCGTTAGCTTTCACCCTTGTGTACGTGCGATTGGGCGCAG
CCTCTCGCCACCAGAAACGATCGCAACGACACTTCGTCCTTCAATCCAGC
CCGCCGCACCACCTCAGCCGCTAATCCTCATCTCACGTTAACAAAAACCT
AACCGCCATCGCTTTCCTCTCAATCTTACCAAAGAATTCAGGGAGAACCG
CAACATTTCGGGCGAACAGCTCGAGAAAGCTCTGTGGCTGGGCCACATGG
AGCTGCAGCGCCTAGAAAAATGGGTCCCGACCAGTAAACAGATGACCGAT
GGTAAAGACATGGACATCAAACTGTAG
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Coding sequence (CDS) from alignment at tig00000090_pilon:291622..292098-

>Ggra4855.t1 ID=Ggra4855.t1|Name=Ggra4855.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00000090_pilon:291622..292098- (Gracilaria gracilis GNS1m male)
ATGACCGCCCCTCCGTCGTCCAAGCACGTCCTCACCTTATATCGCCACTT
ATTACGCGCTGTGCGCTTTTACCCTAGCAAAAAGAGGGACTCCCTGGCGC
AAGCCATCAGAGAAGAATTCAGGGAGAACCGCAACATTTCGGGCGAACAG
CTCGAGAAAGCTCTGTGGCTGGGCCACATGGAGCTGCAGCGCCTAGAAAA
ATGGGTCCCGACCAGTAAACAGATGACCGATGGTAAAGACATGGACATCA
AACTGTAG
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