Ggra4875.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4875.t1
Unique NameGgra4875.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:427017..427790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog160860.XP_007345738.1
Preferred nameMOT1
PFAMsDUF3535,HEAT,Helicase_C,SNF2_N
Max annot lvl4751|Fungi
KEGG koko:K15192
GOsGO:0000228,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006360,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045898,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060260,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000142,GO:2001141
Evalue9.1e-39
EggNOG OGsKOG0392@1|root,KOG0392@2759|Eukaryota,38EZ0@33154|Opisthokonta,3NU0Z@4751|Fungi,3UXUG@5204|Basidiomycota,2256Z@155619|Agaricomycetes,3H24E@355688|Agaricomycetes incertae sedis
Descriptionchromatin remodeling protein
COG categoryK
BRITEko00000,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4875Ggra4875Gracilaria gracilis GNS1m malegenetig00000090_pilon 427017..427790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4875.t1Ggra4875.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 427017..427790 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4875.t1.stop1Ggra4875.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 427017..427019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4875.t1.CDS1Ggra4875.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 427017..427445 -
Ggra4875.t1.CDS2Ggra4875.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 427530..427790 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4875.t1.exon1Ggra4875.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 427017..427445 -
Ggra4875.t1.exon2Ggra4875.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 427530..427790 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4875.t1.intron1Ggra4875.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 427446..427529 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4875.t1.start1Ggra4875.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 427788..427790 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4875.t1 ID=Ggra4875.t1|Name=Ggra4875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MGVKMPRAMTLEKIKELPQEFSNCARLARDAGFDGVEIHCDNRFLLDTLV
QSSTKKGTDKCGGSFENRFRIVDEVLKAVFRHIEPDRWWTDYGLAYVDVW
FPQLKQVIYIVERHLFAVHMPNVTYMRLDKSVEATKRQGIVIRFNADSII
GFLLLTTHLGDLGPNFTGADTVILLEYDWILTKDLQAMDRAHRLDQPSTF
NVYRLIARGTLEEKIMSVRRSRLISPSQW*
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spliced messenger RNA

>Ggra4875.t1 ID=Ggra4875.t1|Name=Ggra4875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000090_pilon:427017..427790- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTTAAGATGCCTCGCGCAATGACTCTGGAAAAGATTAAGGAGTT
GCCGCAGGAGTTTTCCAATTGCGCACGTCTCGCGAGGGATGCTGGATTTG
ATGGCGTGGAGATTCATTGCGACAATAGGTTCCTGTTGGACACTTTGGTG
CAGAGCAGCACCAAGAAGGGGACTGATAAGTGTGGCGGCTCCTTTGAGAA
TCGCTTTAGAATTGTGGATGAGGTGTTGAAGGCTGTGTTCCGCCATATCG
AGCCCGACCGTTGGTGGACTGACTACGGTCTGGCGTACGTGGATGTTTGG
TTTCCACAACTGAAGCAAGTGATTTACATTGTTGAAAGACACCTTTTTGC
TGTGCATATGCCTAATGTTACCTACATGCGTCTTGACAAATCTGTGGAAG
CAACCAAGCGACAAGGCATTGTCATTAGATTCAATGCTGATTCAATCATT
GGTTTTCTCTTGCTTACGACTCATTTGGGTGATCTTGGTCCCAATTTTAC
TGGTGCCGATACTGTCATATTACTCGAGTACGACTGGATTCTGACGAAGG
ATCTGCAGGCGATGGATCGAGCTCACAGATTGGATCAACCAAGTACTTTT
AATGTCTACAGACTTATCGCTCGGGGAACTCTGGAGGAGAAGATCATGAG
TGTTCGAAGGTCAAGACTCATATCGCCATCACAGTGGTGA
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protein sequence of Ggra4875.t1

>Ggra4875.t1 ID=Ggra4875.t1|Name=Ggra4875.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MGVKMPRAMTLEKIKELPQEFSNCARLARDAGFDGVEIHCDNRFLLDTLV
QSSTKKGTDKCGGSFENRFRIVDEVLKAVFRHIEPDRWWTDYGLAYVDVW
FPQLKQVIYIVERHLFAVHMPNVTYMRLDKSVEATKRQGIVIRFNADSII
GFLLLTTHLGDLGPNFTGADTVILLEYDWILTKDLQAMDRAHRLDQPSTF
NVYRLIARGTLEEKIMSVRRSRLISPSQW*
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mRNA from alignment at tig00000090_pilon:427017..427790-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4875.t1 ID=Ggra4875.t1|Name=Ggra4875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000090_pilon:427017..427790- (Gracilaria gracilis GNS1m male)
ATGGGTGTTAAGATGCCTCGCGCAATGACTCTGGAAAAGATTAAGGAGTT
GCCGCAGGAGTTTTCCAATTGCGCACGTCTCGCGAGGGATGCTGGATTTG
ATGGCGTGGAGATTCATTGCGACAATAGGTTCCTGTTGGACACTTTGGTG
CAGAGCAGCACCAAGAAGGGGACTGATAAGTGTGGCGGCTCCTTTGAGAA
TCGCTTTAGAATTGTGGATGAGGTGTTGAAGGCTGTGTTCCGCCATATCG
AGCCCGACCGTGTTCTTATTCGTGTCGCGCCTAATGGGGTTTAAAACGGA
ATTGGAAGTGAGAACCAACGTGAAGCGTTTACATAACACTTCAAGTGGTG
GACTGACTACGGTCTGGCGTACGTGGATGTTTGGTTTCCACAACTGAAGC
AAGTGATTTACATTGTTGAAAGACACCTTTTTGCTGTGCATATGCCTAAT
GTTACCTACATGCGTCTTGACAAATCTGTGGAAGCAACCAAGCGACAAGG
CATTGTCATTAGATTCAATGCTGATTCAATCATTGGTTTTCTCTTGCTTA
CGACTCATTTGGGTGATCTTGGTCCCAATTTTACTGGTGCCGATACTGTC
ATATTACTCGAGTACGACTGGATTCTGACGAAGGATCTGCAGGCGATGGA
TCGAGCTCACAGATTGGATCAACCAAGTACTTTTAATGTCTACAGACTTA
TCGCTCGGGGAACTCTGGAGGAGAAGATCATGAGTGTTCGAAGGTCAAGA
CTCATATCGCCATCACAGTGGTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:427017..427790-

>Ggra4875.t1 ID=Ggra4875.t1|Name=Ggra4875.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000090_pilon:427017..427790- (Gracilaria gracilis GNS1m male)
ATGGGTGTTAAGATGCCTCGCGCAATGACTCTGGAAAAGATTAAGGAGTT
GCCGCAGGAGTTTTCCAATTGCGCACGTCTCGCGAGGGATGCTGGATTTG
ATGGCGTGGAGATTCATTGCGACAATAGGTTCCTGTTGGACACTTTGGTG
CAGAGCAGCACCAAGAAGGGGACTGATAAGTGTGGCGGCTCCTTTGAGAA
TCGCTTTAGAATTGTGGATGAGGTGTTGAAGGCTGTGTTCCGCCATATCG
AGCCCGACCGTTGGTGGACTGACTACGGTCTGGCGTACGTGGATGTTTGG
TTTCCACAACTGAAGCAAGTGATTTACATTGTTGAAAGACACCTTTTTGC
TGTGCATATGCCTAATGTTACCTACATGCGTCTTGACAAATCTGTGGAAG
CAACCAAGCGACAAGGCATTGTCATTAGATTCAATGCTGATTCAATCATT
GGTTTTCTCTTGCTTACGACTCATTTGGGTGATCTTGGTCCCAATTTTAC
TGGTGCCGATACTGTCATATTACTCGAGTACGACTGGATTCTGACGAAGG
ATCTGCAGGCGATGGATCGAGCTCACAGATTGGATCAACCAAGTACTTTT
AATGTCTACAGACTTATCGCTCGGGGAACTCTGGAGGAGAAGATCATGAG
TGTTCGAAGGTCAAGACTCATATCGCCATCACAGTGGTGA
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