Ggra7716.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7716.t1
Unique NameGgra7716.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length513
Homology
BLAST of Ggra7716.t1 vs. uniprot
Match: A0A2V3IWX0 (Tudor domain-containing protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWX0_9FLOR)

HSP 1 Score: 387 bits (994), Expect = 1.540e-126
Identity = 232/524 (44.27%), Postives = 319/524 (60.88%), Query Frame = 0
Query:    5 ALVRSLEEEYGLRNLRDDWIRRQRALSLDIVKGPISRTNLCCMSTGTLPWNILQAHSVQLGVKALVQVEDIINIANANPRSHDAPRVLQLTLNDGAIDFAAVELEPLGGRISMKTIPGTKIVLLPSTMVRRGRVLLIPNDFIFFGSPPTNLWGEQHEMRIAQSLRDAGLPNPKDSSFDSIARPQITNDVDTRIPIDMGGIADAIMTNEN------DEDDDDMFWAQAVEVVDRNIENTGTISLNANTLDDTPT--QRNSYNRKVALGRNIELPL-IGFEATPNENLNENRRT----EVISIEEEPGHQRTENEAIRNTHLEEDQPVTDSLSNKVLEIPSTPVFESDERGFDLPFEDDENARVIDTPSQNA-----IMSKVDLPFIPFSKLRAEGID-QEQSSSLYRVYSMKTGKKTNIRKIGPNYSFFVEVDDGTAIELLQINPDLFKRLAGFAVGSEEYLQDEQDGLPLIRKAVRGIHGFVRVIEKSDGRLINSISEGIPNDVDNFLSAFASNVEARLANYVL 509
            AL  +L+++YGLRN+R  WIRRQ  LS DI+K PI+RT+L  +S GTLPWNI QAHSVQL VKALVQV D+INIANANPRS+  PRVLQ +++DGA +F AVE  PLG R+S+ T+PGTKIVLLPS +VRRGRV+L  +DF FFG+P  N+WG  ++ +I  +L +A LPNP  SSFDSI   +   +    IP+ MGGIADAI   +       D+ +DD FWA AV++ DRN        LNA+  + TP   Q N+     AL +    P+ I  E  P + + E  ++    +V+    +P H           +  +  P TD     ++EIPSTPVFESD               V    SQ A     I++ +  P +PFS+L A   + Q   ++L+RVYS+KT +K  ++  G     F ++DDGTAIELL ++P L   + G    SE++  D ++G   +R A+RGIHGF++V   +DG  + S+++G+P D + FLS FA NVEARL NY++
Sbjct:    6 ALTNALQDQYGLRNIRPQWIRRQSVLSFDIIKAPITRTDLSEISAGTLPWNITQAHSVQLRVKALVQVHDVINIANANPRSNQPPRVLQFSMSDGATEFVAVEFTPLGARLSLHTLPGTKIVLLPSALVRRGRVMLTASDFEFFGAPSANIWGSAYQRQIDNALGEAALPNPSHSSFDSIVASRGGQNGAPVIPVHMGGIADAIPATQRASAQGEDDAEDDGFWAHAVQIADRN--------LNASVANPTPALPQTNAVAHARALPQQRAAPMVIDIEDLPVDCVYETPQSPPHQDVVMHHAQPQH---------GFNSADHVPDTD-----IVEIPSTPVFESDA--------------VAQQQSQPASQGDDILNMLQPPSLPFSRLAAATTNVQPNGTTLHRVYSIKTARKVVVQYNGDKLVLFAQLDDGTAIELLPLHPQLAGDITGLETESEQFRADVENGYVRMRTAIRGIHGFIQVHNGADGAHVISVTKGVP-DQEAFLSRFADNVEARLTNYIM 492          
BLAST of Ggra7716.t1 vs. uniprot
Match: R7QM74 (RMI1_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM74_CHOCR)

HSP 1 Score: 232 bits (591), Expect = 2.100e-66
Identity = 171/448 (38.17%), Postives = 238/448 (53.12%), Query Frame = 0
Query:   34 IVKGPISRTNLCCMSTGTLPWNILQAHSVQLGVKALVQVEDIINIANANPRSHDAPRVLQLTLNDGAIDFAAVELEPLGGRISMKTIPGTKIVLLPSTMVRRGRVLLIPNDFIFFGSPPTNLWGEQHEMRIAQSLRDAGLPNPKDSSFDSIARPQITNDVDTRIPIDMGGIADA-IMTNENDEDDDDMFWAQAVEVVDRNIENTGTISLNANTLDDTPTQRNSYNRKVALGRNIELPLIGFEATPNENLNENRRTEVISIEEEPGHQRTENEAIRNTHLEEDQPVTDSLSNKVLEIPSTPVFESDERGFDLPFEDDENARVIDTPSQNAIMSKVDLPFIPFSKLRAEGIDQ--EQSSSLYRVYSMKTGKKTNIRKIGPNYSFFVEVDDGTAIELLQINPDLFKRLAGFAVGSEEYLQDEQ----DGLPL-----IRKAVRGIHGFVRV 469
            +V GPI R ++C ++ GTLPWN+L+AHSVQLG K LVQVEDIINIA+++PRS  +P VLQ+T+ DG  DF AVELE L  RIS+ TIPGTKI+L P+T+VRRGRV L   DF + G PP+N+WG  +  +I+ +L  AGLPNPK S+FDSI+R    + V  R+  D+GGI+DA I+ +ENDE+DDD FWA+A E+ D          +NA T + +  +R S  R     R   L     EA   +    N  +     +E P      N A     + +D     SL    + IP+ P  E+++       E   +       S+   +  ++ P +P S+L   G D+   +S S+YR +  +   K             V  DDGTAI  L ++    K LA     SE   +       DGL       + K  RG+  F+ V
Sbjct:    1 MVAGPICRADICEITEGTLPWNVLEAHSVQLGTKVLVQVEDIINIASSDPRSKTSPTVLQVTITDGCTDFVAVELESLQ-RISLLTIPGTKIILHPTTLVRRGRVFLTSKDFTYLGPPPSNVWGSAYNEKISSALSSAGLPNPKTSTFDSISRDAAQSGV--RLFPDLGGISDARILVDENDEEDDD-FWAEAAELAD-----ITPSRINAGTRNKSLQERES-GRSDRNDRQSGLTATVAEAPRADLTTSNVPSSGALADEVPT-----NNANSGPIVIDDSSEEGSLQ---MGIPAMPPMETEDHTAHGQSEYPPHFGNEFIESEPMDVDDLEEPPMPLSRLEDLGSDRMSNESRSVYRAFVTRPVSKRRTISCRGKTMVSVPFDDGTAIANLYLDEKTIKNLAMPGSSSEHSNRHTNRHNIDGLSSQGSQQLHKRPRGVTKFIEV 430          
The following BLAST results are available for this feature:
BLAST of Ggra7716.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWX01.540e-12644.27Tudor domain-containing protein 3 n=1 Tax=Gracilar... [more]
R7QM742.100e-6638.17RMI1_N domain-containing protein n=1 Tax=Chondrus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013894RecQ mediated genome instability protein, N-terminalPFAMPF08585RMI1_Ncoord: 88..149
e-value: 9.4E-10
score: 38.7
IPR042470RecQ mediated genome instability protein, N-terminal, subdomain 2GENE3D2.40.50.770coord: 43..168
e-value: 2.4E-13
score: 51.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:141397..143020 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7716.t1Ggra7716.t1Gracilaria gracilis GNS1m malemRNAtig00000088_pilon 141397..143020 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7716.t1 ID=Ggra7716.t1|Name=Ggra7716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MNHNALVRSLEEEYGLRNLRDDWIRRQRALSLDIVKGPISRTNLCCMSTG
TLPWNILQAHSVQLGVKALVQVEDIINIANANPRSHDAPRVLQLTLNDGA
IDFAAVELEPLGGRISMKTIPGTKIVLLPSTMVRRGRVLLIPNDFIFFGS
PPTNLWGEQHEMRIAQSLRDAGLPNPKDSSFDSIARPQITNDVDTRIPID
MGGIADAIMTNENDEDDDDMFWAQAVEVVDRNIENTGTISLNANTLDDTP
TQRNSYNRKVALGRNIELPLIGFEATPNENLNENRRTEVISIEEEPGHQR
TENEAIRNTHLEEDQPVTDSLSNKVLEIPSTPVFESDERGFDLPFEDDEN
ARVIDTPSQNAIMSKVDLPFIPFSKLRAEGIDQEQSSSLYRVYSMKTGKK
TNIRKIGPNYSFFVEVDDGTAIELLQINPDLFKRLAGFAVGSEEYLQDEQ
DGLPLIRKAVRGIHGFVRVIEKSDGRLINSISEGIPNDVDNFLSAFASNV
EARLANYVLRTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013894RMI1_N
IPR042470RMI1_N_2