Ggra7690.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7690.t1
Unique Name	Ggra7690.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	252

Homology

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BLAST of Ggra7690.t1 vs. uniprot
Match: A0A2V3IWY7 (RRP15-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWY7_9FLOR)

HSP 1 Score: 215 bits (548), Expect = 1.760e-66
Identity = 133/223 (59.64%), Postives = 158/223 (70.85%), Query Frame = 0

Query:    1 MAASERPKENSHAQNPVILSRGASLALGNVFKRLVSSETRNKISGQTKKRPKTAILGQNEEVEKALADQAEERRRLKKAKKAKIAFENNARVIPDAATGAALEKELLATATKGAVALFNAVSKAQKSLEEKEAVAKNK-KKGPPVSRESFMEMMKAGLKNSERSAEKGDSGNRGENDGAEESDDGANRVRSKASWLKDDYLTKGSRTLKDWDRRKDEQASEED 222
            M      K+++   NP +LS GAS+ALGNVFKRLV  E R   S  TKKR  + +LGQ+EEVEKAL +QAEE++RLKKA+KAKI FENN RVIPDAATGAALEKELL TATKGAVALFNAV+KAQK +E          KKGPPVSRESFM MMK+  + SE    KG +    E D  +E++D A +  S+A WLKDD+LT  SRTLKDWDR+     +EED
Sbjct:    1 MVPENTAKKDATNGNPAVLSEGASVALGNVFKRLVGPEKRKISSRNTKKRLSSVVLGQSEEVEKALVEQAEEKKRLKKARKAKIEFENNGRVIPDAATGAALEKELLLTATKGAVALFNAVAKAQKEMEXXXXXXXXXXKKGPPVSRESFMAMMKSSWEKSEFGPSKGTADGDAEEDEIDENED-AKKAHSRARWLKDDFLTARSRTLKDWDRKDGNDGTEED 222

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BLAST of Ggra7690.t1 vs. uniprot
Match: R7QBI8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBI8_CHOCR)

HSP 1 Score: 155 bits (393), Expect = 7.080e-42
Identity = 107/210 (50.95%), Postives = 138/210 (65.71%), Query Frame = 0

Query:    8 KENSHAQNPVILSRGASLALGNVFKRLVSSETRNKISGQTKKRPKT----AILGQNEEVEKALADQAEERRRLKKAKKAKIAFENNARVIPDAATGAALEKELLATATKGAVALFNAVSKAQKSLEEKEAVAKNKKKGPPVSRESFMEMMKAGLKNSERSAEKGDSGNRGENDGAEESDDGANRVRSK-ASWLKDDYLTKGSRTLKDWDR 212
            +E   A  PV+LS GA +ALG+VF RLV  ++        KKRP++     +L +NE+V+K+L                K+ FENNA VIPDAAT AALEKELLATATKGAVALFNAV+KAQK  E+++    NKKKGPPVSRESFM MM+AG+     S    D+G + E +G+  SD+ A+ +R + A WLK+D+LT GS  LKD+DR
Sbjct:  142 QEKKPADAPVVLSEGAGVALGSVFNRLVKPKSSRGSRVTGKKRPRSEKASVVLAENEDVQKSLXXXXXXXXXXXXXXXXKLQFENNALVIPDAATNAALEKELLATATKGAVALFNAVAKAQKMNEDEKG--SNKKKGPPVSRESFMSMMRAGVSKDAAS----DAGKKVEEEGS--SDEEASAMRKQGAKWLKNDFLTAGSTKLKDFDR 343

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BLAST of Ggra7690.t1 vs. uniprot
Match: A0A7S0BEW1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BEW1_9RHOD)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-6
Identity = 50/124 (40.32%), Postives = 62/124 (50.00%), Query Frame = 0

Query:   89 NARVIPDAATGAALEKELLATATKGAVALFNAVSKAQKSLEEKEAVAKNKKKGPPVSRESFMEMMKAGLKNSERSAEKGDSGNRGENDGAEESDDGANRVRSKASWLKDDYLTKGSRTLKDWDR 212
            NARVIPDAAT    E+ L   ATKGAVALFNAV+K Q+  E              VS++ FM M+K G     +  E G+           +SDDG    R +   L  +  +K S  LKDWDR
Sbjct:   68 NARVIPDAATDIEKERRLRRIATKGAVALFNAVAKVQRDSEXXXXXXXXXXXXXXVSKDDFMRMVKEG-----KDYETGEI----------DSDDGEADGRGEWVALTAEGESKASAKLKDWDR 176

The following BLAST results are available for this feature:

BLAST of Ggra7690.t1 vs. uniprot

BLAST of Ggra7690.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A2V3IWY7	1.760e-66	59.64	RRP15-like protein n=1 Tax=Gracilariopsis chorda T...	[more]
R7QBI8	7.080e-42	50.95	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A7S0BEW1	1.010e-6	40.32	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..251
IPR012459	Ribosomal RNA-processing protein 15	PFAM	PF07890	Rrp15p	coord: 42..154 e-value: 1.6E-13 score: 51.1
IPR012459	Ribosomal RNA-processing protein 15	PANTHER	PTHR13245	RRP15-LIKE PROTEIN	coord: 47..226

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:71748..72503 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7690.t1	Ggra7690.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000088_pilon 71748..72503 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7690.t1 ID=Ggra7690.t1|Name=Ggra7690.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MAASERPKENSHAQNPVILSRGASLALGNVFKRLVSSETRNKISGQTKKR
PKTAILGQNEEVEKALADQAEERRRLKKAKKAKIAFENNARVIPDAATGA
ALEKELLATATKGAVALFNAVSKAQKSLEEKEAVAKNKKKGPPVSRESFM
EMMKAGLKNSERSAEKGDSGNRGENDGAEESDDGANRVRSKASWLKDDYL
TKGSRTLKDWDRRKDEQASEEDSDSDGASPSQGDDSDDISGQDISSGSTS
S*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012459	Rrp15