Ggra5282.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5282.t1
Unique NameGgra5282.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Homology
BLAST of Ggra5282.t1 vs. uniprot
Match: A0A2V3J3P0 (Translation initiation factor IF-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3P0_9FLOR)

HSP 1 Score: 258 bits (658), Expect = 1.040e-76
Identity = 145/228 (63.60%), Postives = 163/228 (71.49%), Query Frame = 0
Query:  122 ESSFATFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTF----------------------------DSTTLEVAVPGMTVGVIGIKTATPPGAEVHVVRNEKATKSNSQ 321
            E +FATFIDT  HAAFKAMR  GTV  DIVVLVVA DDGVMPQTIE A LAR A+VP+IVAIN  D PGADPE +RY+LLD L +N EQLG DVQ +DISA+T +NLPQLLDAISLQAEM DLR + NAPGAG+CLESR+DR+LGSVAT+V+R+G                              DS  L  A PGMTVGVIGIKT  PPGAEVHVV NEK  K+ S+
Sbjct:  196 EEAFATFIDTPGHAAFKAMRANGTVGTDIVVLVVAADDGVMPQTIEAAKLARLASVPIIVAINKCDAPGADPERVRYQLLDQLQLNAEQLGGDVQCVDISAKTGSNLPQLLDAISLQAEMLDLRANLNAPGAGVCLESRIDRALGSVATIVVRNGMLRAGDFLLFQSPKVLRGDLYGRIRGIIASDSERLNEATPGMTVGVIGIKTTIPPGAEVHVVENEKLAKAKSR 423          
BLAST of Ggra5282.t1 vs. uniprot
Match: R7Q2J5 (Translation initiation factor IF2, organelle n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2J5_CHOCR)

HSP 1 Score: 239 bits (611), Expect = 1.430e-69
Identity = 137/235 (58.30%), Postives = 161/235 (68.51%), Query Frame = 0
Query:  117 GDNSSE--SSFATFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTF----------------------------DSTTLEVAVPGMTVGVIGIKTATPPGAEVHVVRNEKATKSNSQ 321
            G+N  E  S FATFIDT  HAAFK+MR  GT+  D+VVLVVA DDGVMPQT+E  NLAR ANVPVIVAIN  D PGADPE +RY+LL+ LGINTEQLG DVQ +DISA+   NLPQLL+AISLQAEM DL++ P+A GAGICLESRLDR+ GSVATVV+RSG                              + T L+V  PG+  G+IG++   PPGAE  V  NEKA ++ SQ
Sbjct:  218 GNNREEAHSKFATFIDTPGHAAFKSMRANGTIATDLVVLVVAADDGVMPQTVEAGNLARAANVPVIVAINKCDMPGADPERVRYQLLESLGINTEQLGGDVQCVDISAKNGTNLPQLLEAISLQAEMLDLKSDPSARGAGICLESRLDRAFGSVATVVVRSGILKPGQHVVFQSPKALRGDLFGRIRSLVDRNGTQLDVVEPGVAAGLIGLRDPIPPGAEFCVEVNEKAARAKSQ 452          
BLAST of Ggra5282.t1 vs. uniprot
Match: A0A7V0V9F6 (Translation initiation factor IF-2 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V0V9F6_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 6.310e-40
Identity = 91/209 (43.54%), Postives = 124/209 (59.33%), Query Frame = 0
Query:  127 TFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTF---------------------DSTTLEVAVPGMTVGVIGIKTATPPGAEVHVVRNEK 314
            TFIDT  H AF AMR +G  V DI VLVVA DDGVMPQT+E  N A+ ANVP+IVA+N  D P ADP  +R +L +  G+  E+ G D  ++DISA+ + N+ +LL+ I L AE+ +L+ +PN  G GIC+E++LDR  G VATV++  GT                         ++  A P   V +IG+ +   PG E+ VV +EK
Sbjct:  295 TFIDTPGHEAFTAMRARGAKVTDIAVLVVAADDGVMPQTVEAINHAKAANVPIIVAVNKIDKPEADPMRVRQELTNY-GLVPEEWGGDTIFVDISAKKKINIEELLEMILLVAEVLELKANPNTAGRGICIETKLDRGRGPVATVLVNKGTMRVGDAVVAGTAYGKIRAMNDDKGHSVRTATPAQPVEIIGLSSLPQPGEEIKVVEDEK 502          
BLAST of Ggra5282.t1 vs. uniprot
Match: A0A7V5ZE73 (Translation initiation factor IF-2 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V5ZE73_9BACT)

HSP 1 Score: 155 bits (393), Expect = 6.380e-40
Identity = 89/218 (40.83%), Postives = 129/218 (59.17%), Query Frame = 0
Query:  118 DNSSESSFATFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTFDSTTLEVA---------------------VPGMTVGVIGIKTATPPGAEVHVVRNEK 314
            +++ E +  TF+DT  H AF AMR +G  V DI VLVVA DDGVMPQT+E  N A+ ANVP+IVAIN  D P A+P+ ++ +L +L G+  E+ G D  ++ +SA+ R  L  LL+AI L AE+ +L+  PNAP  G+ +ES+LD+  G VAT++++ GTF      VA                      P M V V+G+      G ++ VV++E+
Sbjct:    4 EHAGERAKITFLDTPGHEAFTAMRARGAQVTDIAVLVVAADDGVMPQTVEALNHAKAANVPIIVAINKIDKPEANPDRVKQQLAEL-GVVPEEWGGDTIFVPVSAKQRIGLEDLLEAILLVAEVQELKADPNAPAQGVVIESKLDKGRGPVATIIVQQGTFKQGDAVVAGEAYGRIKALVDDRGNRVPKATPSMPVEVVGLSAVPTAGEKMEVVKDER 220          
BLAST of Ggra5282.t1 vs. uniprot
Match: A0A2H5WZ64 (Translation initiation factor IF-2 n=4 Tax=Bacteria TaxID=2 RepID=A0A2H5WZ64_9BACT)

HSP 1 Score: 156 bits (394), Expect = 4.310e-39
Identity = 90/218 (41.28%), Postives = 129/218 (59.17%), Query Frame = 0
Query:  118 DNSSESSFATFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTFDSTTLEVA---------------------VPGMTVGVIGIKTATPPGAEVHVVRNEK 314
            +++ E +  TF+DT  H AF AMR +G  V DI VLVVA DDGVMPQT+E  N A+ ANVP+IVAIN  D P A+P+ ++ +L +L G+  E+ G D  ++ +SA+ R  L  LL+AI L AE+ +L+  PNAP  G+ +ES+LD+  G VAT++++ GTF      VA                      P M V VIG+      G ++ VV++E+
Sbjct:  185 EHAGEKAKITFLDTPGHEAFTAMRARGAQVTDIAVLVVAADDGVMPQTVEALNHAKAANVPIIVAINKIDKPEANPDRVKQQLAEL-GVMPEEWGGDTIFVPVSAKQRIGLGDLLEAILLVAEVQELKADPNAPAQGVVIESKLDKGRGPVATIIVQQGTFKQGDAVVAGEAYGRIKALLDDRGNRVPKATPAMPVEVIGLSAVPNAGEKMEVVKDER 401          
BLAST of Ggra5282.t1 vs. uniprot
Match: translation initiation factor IF-2 n=1 Tax=Acidithiobacillus caldus TaxID=33059 RepID=UPI0007F4E3D7 (translation initiation factor IF-2 n=1 Tax=Acidithiobacillus caldus TaxID=33059 RepID=UPI0007F4E3D7)

HSP 1 Score: 155 bits (391), Expect = 5.550e-39
Identity = 91/209 (43.54%), Postives = 124/209 (59.33%), Query Frame = 0
Query:  127 TFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTFDSTTLEVA---------------------VPGMTVGVIGIKTATPPGAEVHVVRNEK 314
            TF+DT  H AF AMR +G    DIV+LVVA DDGVMPQTIE  + A+ A VP++VA+N  D PG DPE IR +L +   +  E+ G D Q++++SA+T  ++  LLDA+ LQAE+ DL    N P  G+ +ESRLDR  G+VATV++R GT  S  + +A                      PG+ V V+G+      G EV VV +E+
Sbjct:  133 TFLDTPGHEAFTAMRARGAQATDIVILVVAADDGVMPQTIEAIHHAKAAGVPMVVAVNKIDKPGGDPERIRQELANQ-DVLPEEWGGDTQFVNVSAKTGLHIDDLLDAVLLQAELLDLEVQINGPAKGVVIESRLDRGRGAVATVLVRQGTLHSGDVLLAGAQYGRVRALVDDNGRNIATVTPGLPVEVLGLSDVPQAGDEVVVVADER 340          
BLAST of Ggra5282.t1 vs. uniprot
Match: A0A7V3NNF6 (Translation initiation factor IF-2 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3NNF6_9DELT)

HSP 1 Score: 155 bits (393), Expect = 1.610e-38
Identity = 97/211 (45.97%), Postives = 124/211 (58.77%), Query Frame = 0
Query:  128 FIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGT-------------------FD--STTLEVAVPGMTVGVIGIKTATPPGAEVHVVRNEKATK 317
            FIDT  HAAF  MR +G  V DIVVLVVA DDGVMPQTIE  N A+ A VP++VAIN  D P A P+H++ KL +  G+  E+ G DV     SA+T   + +LL+AISLQAEM  LR +P  P  G  +ESRLD+  G+VA+++++ GT                   FD     +E A P M V VIG+      G E+ VV +EKA K
Sbjct:  446 FIDTPGHAAFTKMRARGAEVTDIVVLVVAADDGVMPQTIEAINHAKAAKVPIVVAINKIDLPNAKPDHVKSKLAEQ-GLMPEEWGGDVLMTPCSAKTGKGVDELLEAISLQAEMLQLRGNPKIPARGFVIESRLDKGRGAVASIIIKDGTLKPKDYIVCGIYSGRVRAIFDHLGRQVESAGPSMPVEVIGLDGVPDAGEELIVVEDEKAAK 655          
BLAST of Ggra5282.t1 vs. uniprot
Match: translation initiation factor IF-2 n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAE1272 (translation initiation factor IF-2 n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAE1272)

HSP 1 Score: 155 bits (393), Expect = 1.650e-38
Identity = 94/208 (45.19%), Postives = 123/208 (59.13%), Query Frame = 0
Query:  127 TFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTF---------------------DSTTLEVAVPGMTVGVIGIKTATPPGAEVHVVRNE 313
            TFIDT  HAAF AMR +G  V DIVVLVVA DDGVMPQTIE  N A+ A VP+I+AIN  D P A PE +R +LL    +  E  G DV  +++SA+ + NL +LL+ ISLQAE+ DL+T+P+ P  G  +E++LDR  G VATV+++ GT                        TT++ A P + V V+G       G  + VV NE
Sbjct:  462 TFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQTIEAINHAKAAKVPMIIAINKIDKPDAKPERVRTELLQH-EVQVESFGGDVVDVEVSAKNKTNLDKLLEMISLQAELLDLKTNPDRPAEGTVIEAKLDRGRGPVATVLVQRGTLRIGDIIVAGAEMGRVRALISDQGTTIQEAGPSVPVEVLGFNGPPEAGDRLAVVENE 668          
BLAST of Ggra5282.t1 vs. uniprot
Match: M2XYQ0 (Translation initiation factor IF-2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYQ0_GALSU)

HSP 1 Score: 155 bits (391), Expect = 1.850e-38
Identity = 92/218 (42.20%), Postives = 123/218 (56.42%), Query Frame = 0
Query:  121 SESSFATFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTFD---------------------STTLEVAVPGMTVGVIGIKTATPPGAEVHVVRNEKATK 317
            S  +  TF+DT  H AF AMR  GT V DIVVLVVA DDGVMPQT+E  N AR A VP+IVAIN  D  G  PE +   L     +  EQ+G DVQ + +SA  R  L  L+DAI LQAE+ DLR + + PG  IC+ES++ + LGSVA  ++R G+F                        ++ +A P     ++G+K    PG+ V V+++E+  K
Sbjct:  250 SNDAMVTFLDTPGHEAFAAMRACGTQVTDIVVLVVAADDGVMPQTLEAVNHARNAQVPIIVAINKVDISGCSPEKVMNDLFSYAELQVEQIGGDVQCVLVSAVKRQGLENLIDAILLQAELSDLRANKDDPGEAICIESKVSKGLGSVANCIVRWGSFRVHDYVASGRTWGRTRRMLDDRGNSISLAGPSTPFTLVGMKELVDPGSFVFVMKDEEDAK 467          
BLAST of Ggra5282.t1 vs. uniprot
Match: A0A1G6UUW6 (Translation initiation factor IF-2 n=6 Tax=Belnapia TaxID=365532 RepID=A0A1G6UUW6_9PROT)

HSP 1 Score: 155 bits (392), Expect = 2.270e-38
Identity = 88/165 (53.33%), Postives = 111/165 (67.27%), Query Frame = 0
Query:  122 ESSFATFIDTRRHAAFKAMRVKGTVVIDIVVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKLLDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNAPGAGICLESRLDRSLGSVATVVMRSGTFDSTTLEVA 286
            + S  TFIDT  HAAF AMR +G  V D+VVLVVA DDGVMPQTIE  N A+ ANVP+IVAIN  D PG  P+ +R +LL    I  E LG D Q +++SA  +  L +LL+AI+LQAE+ DLR +PN    G  +ESRLDR  G VATV+++ GT +   + VA
Sbjct:  473 DGSRVTFIDTPGHAAFTAMRSRGASVTDMVVLVVAADDGVMPQTIEAINHAKAANVPIIVAINKIDKPGVRPDRVRQELLQH-EIVVESLGGDTQEIEVSATQKIGLDKLLEAITLQAEVLDLRANPNRAAEGTVIESRLDRGRGPVATVLVQKGTLNQGDIVVA 636          
The following BLAST results are available for this feature:
BLAST of Ggra5282.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3P01.040e-7663.60Translation initiation factor IF-2 n=1 Tax=Gracila... [more]
R7Q2J51.430e-6958.30Translation initiation factor IF2, organelle n=1 T... [more]
A0A7V0V9F66.310e-4043.54Translation initiation factor IF-2 n=1 Tax=Actinom... [more]
A0A7V5ZE736.380e-4040.83Translation initiation factor IF-2 n=1 Tax=Armatim... [more]
A0A2H5WZ644.310e-3941.28Translation initiation factor IF-2 n=4 Tax=Bacteri... [more]
translation initiation factor IF-2 n=1 Tax=Acidithiobacillus caldus TaxID=33059 RepID=UPI0007F4E3D75.550e-3943.54translation initiation factor IF-2 n=1 Tax=Acidith... [more]
A0A7V3NNF61.610e-3845.97Translation initiation factor IF-2 n=1 Tax=Deltapr... [more]
translation initiation factor IF-2 n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAE12721.650e-3845.19translation initiation factor IF-2 n=1 Tax=unclass... [more]
M2XYQ01.850e-3842.20Translation initiation factor IF-2 n=1 Tax=Galdier... [more]
A0A1G6UUW62.270e-3853.33Translation initiation factor IF-2 n=6 Tax=Belnapi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Translational (tr)-type GTP-binding domainPFAMPF00009GTP_EFTUcoord: 75..236
e-value: 1.9E-16
score: 60.2
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 248..282
e-value: 5.1E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..52
NoneNo IPR availablePANTHERPTHR43381:SF5TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIALcoord: 121..329
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 69..247
e-value: 7.8E-29
score: 102.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 124..247
IPR015760Translation initiation factor IF- 2PANTHERPTHR43381TRANSLATION INITIATION FACTOR IF-2-RELATEDcoord: 121..329

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:118966..126654 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5282.t1Ggra5282.t1Gracilaria gracilis GNS1m malemRNAtig00000082_pilon 118966..126654 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5282.t1 ID=Ggra5282.t1|Name=Ggra5282.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MLGLLTNGVINALADGETDMKLGKEVIPRDGEMDDKKELAHTDSDGGAAT
YDDNTGCETMAYVAEVRGTVVQRQDTIVTEESAQSNGDTPHEATTRMQQA
DAPEAGHQHATERKHSGDNSSESSFATFIDTRRHAAFKAMRVKGTVVIDI
VVLVVADDDGVMPQTIEDANLARPANVPVIVAINTFDTPGADPEHIRYKL
LDLLGINTEQLGSDVQWLDISAETRANLPQLLDAISLQAEMPDLRTSPNA
PGAGICLESRLDRSLGSVATVVMRSGTFDSTTLEVAVPGMTVGVIGIKTA
TPPGAEVHVVRNEKATKSNSQTTATTSAQTESEVAALGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795T_Tr_GTP-bd_dom
IPR027417P-loop_NTPase
IPR015760TIF_IF2