Ggra2636.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2636.t1
Unique NameGgra2636.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1007431..1008620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_02951T0
Preferred nameZFPL1
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0006355,GO:0006403,GO:0006810,GO:0008150,GO:0008270,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0015931,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0033036,GO:0033227,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0060255,GO:0065007,GO:0071702,GO:0071705,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141
Evalue9.53e-14
EggNOG OGsKOG3970@1|root,KOG3970@2759|Eukaryota
DescriptiondsRNA transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2636Ggra2636Gracilaria gracilis GNS1m malegenetig00000005_pilon 1007431..1008620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2636.t1Ggra2636.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1007431..1008620 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2636.t1.stop1Ggra2636.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1007431..1007433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2636.t1.CDS1Ggra2636.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1007431..1008251 -
Ggra2636.t1.CDS2Ggra2636.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1008327..1008447 -
Ggra2636.t1.CDS3Ggra2636.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1008513..1008620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2636.t1.exon1Ggra2636.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1007431..1008251 -
Ggra2636.t1.exon2Ggra2636.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1008327..1008447 -
Ggra2636.t1.exon3Ggra2636.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1008513..1008620 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2636.t1.intron1Ggra2636.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1008252..1008326 -
Ggra2636.t1.intron2Ggra2636.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1008448..1008512 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2636.t1.start1Ggra2636.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1008618..1008620 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2636.t1 ID=Ggra2636.t1|Name=Ggra2636.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MGRCGTCRSHTQHFCFVHQAFVCDGCLVTDESVHRRCVVWTYRNFIENSS
YDWPPICPACGEELDVDGDNVRRTCLHVEHASCIEASHPPEHNCSVCQTP
LFDSNSTSQLTHAIRKRLRNMVTVTHFSAPTITTASSWDDSAKWKSSSSR
NTINLKLEQRVEHPNAQRQTDSETTSKVLSETDCSDGIGPQGALKAKSNA
DGTPSRVSMAKRTLPSPQQTKTGELRLDLEPLPQNKDGNGPAMKTVKRES
QSGGLLTSTSMRKVMKLGNRRLIELRKLLMSTNRKQLLTVIACVACIVLV
GFLMSGEEELSVVAKPSVEHVSLPHVRVNPAFIQPRNAGNQESVPGLIQ*
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spliced messenger RNA

>Ggra2636.t1 ID=Ggra2636.t1|Name=Ggra2636.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000005_pilon:1007431..1008620- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCTGCGGTACATGCCGCTCCCACACGCAACATTTCTGTTTCGT
GCATCAGGCGTTTGTCTGTGACGGTTGCTTGGTTACCGATGAATCTGTAC
ACAGAAGATGCGTAGTTTGGACCTATCGTAATTTCATCGAAAACTCTTCC
TACGATTGGCCCCCAATTTGTCCTGCCTGCGGTGAGGAGCTAGACGTCGA
CGGTGATAACGTTCGACGCACCTGTCTTCACGTTGAGCACGCTTCTTGTA
TCGAAGCTTCCCACCCCCCGGAACACAATTGCTCTGTATGTCAAACTCCA
CTTTTTGACAGTAATAGTACCTCTCAATTAACCCACGCCATAAGGAAACG
GCTGAGGAACATGGTGACTGTTACCCACTTCAGTGCGCCTACGATCACTA
CTGCCTCTTCCTGGGATGATTCCGCTAAATGGAAGTCATCCTCATCACGA
AATACCATCAATCTAAAACTCGAGCAACGTGTAGAACACCCTAACGCACA
ACGTCAGACAGATTCAGAGACTACCTCTAAAGTTTTATCTGAAACAGATT
GCAGCGATGGTATTGGTCCTCAGGGCGCGCTTAAGGCAAAATCCAATGCA
GACGGTACTCCTTCTCGCGTTTCTATGGCGAAAAGAACGCTTCCGTCTCC
ACAGCAGACCAAAACGGGTGAGCTGCGTCTAGACTTGGAGCCCCTCCCAC
AGAATAAGGACGGCAACGGTCCAGCGATGAAAACGGTTAAGCGTGAGTCT
CAATCGGGGGGTCTCCTTACGTCTACTTCGATGCGAAAGGTGATGAAACT
TGGTAATAGGCGACTGATTGAGCTCAGAAAGCTTCTTATGTCAACCAACC
GAAAACAGCTTTTAACTGTGATTGCTTGTGTGGCCTGTATCGTCTTGGTC
GGCTTCCTCATGTCTGGGGAGGAGGAGTTAAGCGTTGTCGCGAAACCGAG
TGTTGAGCACGTCTCTCTACCACATGTTAGGGTGAACCCTGCATTTATCC
AGCCCCGGAATGCAGGAAACCAGGAAAGTGTTCCAGGACTAATCCAGTAG
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protein sequence of Ggra2636.t1

>Ggra2636.t1 ID=Ggra2636.t1|Name=Ggra2636.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MGRCGTCRSHTQHFCFVHQAFVCDGCLVTDESVHRRCVVWTYRNFIENSS
YDWPPICPACGEELDVDGDNVRRTCLHVEHASCIEASHPPEHNCSVCQTP
LFDSNSTSQLTHAIRKRLRNMVTVTHFSAPTITTASSWDDSAKWKSSSSR
NTINLKLEQRVEHPNAQRQTDSETTSKVLSETDCSDGIGPQGALKAKSNA
DGTPSRVSMAKRTLPSPQQTKTGELRLDLEPLPQNKDGNGPAMKTVKRES
QSGGLLTSTSMRKVMKLGNRRLIELRKLLMSTNRKQLLTVIACVACIVLV
GFLMSGEEELSVVAKPSVEHVSLPHVRVNPAFIQPRNAGNQESVPGLIQ*
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mRNA from alignment at tig00000005_pilon:1007431..1008620-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2636.t1 ID=Ggra2636.t1|Name=Ggra2636.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1190bp|location=Sequence derived from alignment at tig00000005_pilon:1007431..1008620- (Gracilaria gracilis GNS1m male)
ATGGGCCGCTGCGGTACATGCCGCTCCCACACGCAACATTTCTGTTTCGT
GCATCAGGCGTTTGTCTGTGACGGTTGCTTGGTTACCGATGAATCTGTAC
ACAGAAGAGTGAGCTACCCATTTCCAAGTCTACCACCATCGCGATTTCCT
CTACTGACCATCTATCTGTGCAGTGCGTAGTTTGGACCTATCGTAATTTC
ATCGAAAACTCTTCCTACGATTGGCCCCCAATTTGTCCTGCCTGCGGTGA
GGAGCTAGACGTCGACGGTGATAACGTTCGACGCACCTGTCTTCGTAAGT
TCCCACTACTTTCTGGCGACCTTTGATTGTTTTCAAGCTTGTTTTGACAT
CCTTTTGTTTCATTTGCAGACGTTGAGCACGCTTCTTGTATCGAAGCTTC
CCACCCCCCGGAACACAATTGCTCTGTATGTCAAACTCCACTTTTTGACA
GTAATAGTACCTCTCAATTAACCCACGCCATAAGGAAACGGCTGAGGAAC
ATGGTGACTGTTACCCACTTCAGTGCGCCTACGATCACTACTGCCTCTTC
CTGGGATGATTCCGCTAAATGGAAGTCATCCTCATCACGAAATACCATCA
ATCTAAAACTCGAGCAACGTGTAGAACACCCTAACGCACAACGTCAGACA
GATTCAGAGACTACCTCTAAAGTTTTATCTGAAACAGATTGCAGCGATGG
TATTGGTCCTCAGGGCGCGCTTAAGGCAAAATCCAATGCAGACGGTACTC
CTTCTCGCGTTTCTATGGCGAAAAGAACGCTTCCGTCTCCACAGCAGACC
AAAACGGGTGAGCTGCGTCTAGACTTGGAGCCCCTCCCACAGAATAAGGA
CGGCAACGGTCCAGCGATGAAAACGGTTAAGCGTGAGTCTCAATCGGGGG
GTCTCCTTACGTCTACTTCGATGCGAAAGGTGATGAAACTTGGTAATAGG
CGACTGATTGAGCTCAGAAAGCTTCTTATGTCAACCAACCGAAAACAGCT
TTTAACTGTGATTGCTTGTGTGGCCTGTATCGTCTTGGTCGGCTTCCTCA
TGTCTGGGGAGGAGGAGTTAAGCGTTGTCGCGAAACCGAGTGTTGAGCAC
GTCTCTCTACCACATGTTAGGGTGAACCCTGCATTTATCCAGCCCCGGAA
TGCAGGAAACCAGGAAAGTGTTCCAGGACTAATCCAGTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1007431..1008620-

>Ggra2636.t1 ID=Ggra2636.t1|Name=Ggra2636.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000005_pilon:1007431..1008620- (Gracilaria gracilis GNS1m male)
ATGGGCCGCTGCGGTACATGCCGCTCCCACACGCAACATTTCTGTTTCGT
GCATCAGGCGTTTGTCTGTGACGGTTGCTTGGTTACCGATGAATCTGTAC
ACAGAAGATGCGTAGTTTGGACCTATCGTAATTTCATCGAAAACTCTTCC
TACGATTGGCCCCCAATTTGTCCTGCCTGCGGTGAGGAGCTAGACGTCGA
CGGTGATAACGTTCGACGCACCTGTCTTCACGTTGAGCACGCTTCTTGTA
TCGAAGCTTCCCACCCCCCGGAACACAATTGCTCTGTATGTCAAACTCCA
CTTTTTGACAGTAATAGTACCTCTCAATTAACCCACGCCATAAGGAAACG
GCTGAGGAACATGGTGACTGTTACCCACTTCAGTGCGCCTACGATCACTA
CTGCCTCTTCCTGGGATGATTCCGCTAAATGGAAGTCATCCTCATCACGA
AATACCATCAATCTAAAACTCGAGCAACGTGTAGAACACCCTAACGCACA
ACGTCAGACAGATTCAGAGACTACCTCTAAAGTTTTATCTGAAACAGATT
GCAGCGATGGTATTGGTCCTCAGGGCGCGCTTAAGGCAAAATCCAATGCA
GACGGTACTCCTTCTCGCGTTTCTATGGCGAAAAGAACGCTTCCGTCTCC
ACAGCAGACCAAAACGGGTGAGCTGCGTCTAGACTTGGAGCCCCTCCCAC
AGAATAAGGACGGCAACGGTCCAGCGATGAAAACGGTTAAGCGTGAGTCT
CAATCGGGGGGTCTCCTTACGTCTACTTCGATGCGAAAGGTGATGAAACT
TGGTAATAGGCGACTGATTGAGCTCAGAAAGCTTCTTATGTCAACCAACC
GAAAACAGCTTTTAACTGTGATTGCTTGTGTGGCCTGTATCGTCTTGGTC
GGCTTCCTCATGTCTGGGGAGGAGGAGTTAAGCGTTGTCGCGAAACCGAG
TGTTGAGCACGTCTCTCTACCACATGTTAGGGTGAACCCTGCATTTATCC
AGCCCCGGAATGCAGGAAACCAGGAAAGTGTTCCAGGACTAATCCAGTAG
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