Ggra6564.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6564.t1
Unique Name	Ggra6564.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:283066..284802 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008783243.1
PFAMs	Pyr_redox_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K18914
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016491,GO:0016730,GO:0016731,GO:0022900,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071944,GO:0097159,GO:1901265,GO:1901363
Evalue	3.95e-59
EggNOG OGs	COG0493@1\|root,KOG1800@2759\|Eukaryota,37QSZ@33090\|Viridiplantae,3GB49@35493\|Streptophyta,3KURH@4447\|Liliopsida
EC	1.18.1.6
Description	NADPH adrenodoxin oxidoreductase, mitochondrial
COG category	C
BRITE	ko00000,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6564	Ggra6564	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 283066..284802 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6564.t1.stop1	Ggra6564.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 283066..283068 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6564.t1.CDS1	Ggra6564.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 283066..284802 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6564.t1.exon1	Ggra6564.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 283066..284802 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6564.t1.start1	Ggra6564.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 284800..284802 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6564.t1	Ggra6564.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 283066..284802 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:283066..284802-
coding sequence from alignment at tig00000081_pilon:283066..284802-

mRNA sequence

>Ggra6564.t1 ID=Ggra6564.t1|Name=Ggra6564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp
MRSETAFWKNVELPRIIFGKTMKTIKTIQVPEIGVVVEITHDGSESAIGD
YLPGAFRDVSRSFATFQSAHACASDWLGFPKNLQGGRCPIRRLSRRRIRC
DAQVWLHTQVGPRLMRLAAPTIIAPASARRLLHMRAAVVGAGPAGIYAAQ
SLLKRFPTCTIDIIEALPVPFGLVRYGVSPDHPATKNVINQFSSFIRTNR
HRINFFGNVPVHERHLITPKRLDDLYDLSVYATGAAHPRGLTDVSIPSRF
VYSAQDFVFWMNGHPDVCGTSLPNSLSTSIYRDLKSADQVAVIGVGNVAI
DVARLLLRPVQDLYDTDISQSALEFLSQSPVKSVTLFGRKSPVGASWTTP
ALREVVTKIPAIVTACDHALVQRDFDSAQLPRAKKSMLKILLERTVDIKS
AQLHYHEVHGSAILRLEFLKSVHSFDAADGHVKVRLKRNHPQCNQADLLD
VQDDVEQRFGATFLSLGYVGGKGPELRVGWANGKGSGIIGDNKWDAETLI
SALSDPPSRNSELPGILNLLEEECVKYVTWEGWENIDAVERGRAQRYGRN
GGRVKLETVQEMLQVANQPSPGVLKSQR*

spliced messenger RNA

>Ggra6564.t1 ID=Ggra6564.t1|Name=Ggra6564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000081_pilon:283066..284802- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGCGAAACAGCGTTCTGGAAGAATGTAGAATTGCCGCGAATAAT
ATTTGGAAAGACAATGAAGACGATCAAGACGATACAAGTCCCAGAGATTG
GTGTCGTCGTGGAAATCACCCACGATGGCAGCGAAAGCGCAATCGGCGAC
TATCTCCCTGGCGCATTCCGCGACGTTTCGCGAAGCTTCGCGACGTTTCA
AAGTGCTCACGCGTGCGCGTCTGATTGGTTGGGCTTTCCAAAAAATCTAC
AGGGCGGACGCTGTCCAATCAGAAGGCTATCCCGGAGGCGCATCAGATGT
GATGCGCAGGTATGGCTACACACGCAAGTCGGCCCCCGGCTCATGCGTCT
CGCCGCCCCGACCATCATTGCGCCCGCGTCTGCTCGGCGGCTTCTCCACA
TGCGTGCGGCGGTTGTCGGAGCCGGACCGGCCGGCATTTACGCGGCGCAG
TCGCTTCTAAAACGCTTCCCAACATGTACCATCGACATCATCGAGGCGCT
TCCCGTGCCCTTCGGGCTCGTTCGATACGGCGTGTCGCCCGATCACCCGG
CCACAAAGAACGTGATCAACCAGTTTTCTTCGTTCATTCGCACAAACCGC
CACAGAATCAACTTTTTCGGCAACGTCCCAGTGCATGAACGCCACTTAAT
CACGCCGAAACGGCTGGACGACTTGTATGATTTGAGCGTGTATGCCACCG
GTGCCGCACATCCACGAGGTCTTACTGATGTTTCCATCCCTTCTCGGTTT
GTTTATAGCGCACAAGATTTTGTGTTCTGGATGAATGGCCACCCCGATGT
GTGTGGCACATCGCTTCCGAATTCACTTTCGACCAGTATTTACCGCGATT
TGAAGTCTGCTGATCAAGTTGCTGTCATAGGAGTGGGCAACGTTGCAATT
GATGTTGCTCGCCTCTTACTCCGCCCCGTGCAGGACTTGTATGACACCGA
CATTTCACAATCTGCGCTTGAGTTTCTATCCCAATCGCCTGTCAAATCCG
TCACTTTGTTCGGTCGCAAAAGTCCCGTGGGTGCTTCATGGACTACTCCA
GCTTTGCGAGAAGTCGTTACCAAGATTCCAGCTATTGTCACCGCTTGTGA
TCACGCCCTTGTGCAAAGAGATTTCGATTCTGCTCAGCTCCCCAGAGCGA
AGAAGTCTATGTTGAAGATTTTGCTAGAAAGAACTGTCGATATTAAGTCT
GCTCAGCTGCATTATCACGAGGTCCACGGCAGTGCTATACTACGCCTCGA
GTTTTTAAAATCCGTTCATTCGTTTGATGCCGCCGATGGTCATGTAAAAG
TGCGATTGAAACGGAATCACCCGCAATGCAACCAAGCCGATCTTTTAGAT
GTACAAGACGATGTGGAACAGCGTTTTGGTGCGACATTTCTTAGTCTGGG
ATATGTTGGAGGAAAAGGTCCGGAGCTGAGAGTTGGATGGGCGAATGGGA
AAGGCTCTGGAATCATTGGTGACAACAAGTGGGACGCTGAAACCCTCATC
AGTGCACTTTCAGACCCTCCATCACGGAACTCTGAGCTGCCTGGAATACT
CAATTTACTCGAAGAAGAATGTGTGAAGTATGTTACTTGGGAAGGATGGG
AGAATATTGATGCTGTGGAAAGAGGACGGGCGCAACGCTATGGTAGAAAT
GGTGGTCGCGTAAAGCTTGAAACAGTTCAGGAAATGCTGCAGGTTGCAAA
TCAACCGTCGCCTGGCGTTTTGAAGTCTCAGAGATGA

protein sequence of Ggra6564.t1

>Ggra6564.t1 ID=Ggra6564.t1|Name=Ggra6564.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=579bp
MRSETAFWKNVELPRIIFGKTMKTIKTIQVPEIGVVVEITHDGSESAIGD
YLPGAFRDVSRSFATFQSAHACASDWLGFPKNLQGGRCPIRRLSRRRIRC
DAQVWLHTQVGPRLMRLAAPTIIAPASARRLLHMRAAVVGAGPAGIYAAQ
SLLKRFPTCTIDIIEALPVPFGLVRYGVSPDHPATKNVINQFSSFIRTNR
HRINFFGNVPVHERHLITPKRLDDLYDLSVYATGAAHPRGLTDVSIPSRF
VYSAQDFVFWMNGHPDVCGTSLPNSLSTSIYRDLKSADQVAVIGVGNVAI
DVARLLLRPVQDLYDTDISQSALEFLSQSPVKSVTLFGRKSPVGASWTTP
ALREVVTKIPAIVTACDHALVQRDFDSAQLPRAKKSMLKILLERTVDIKS
AQLHYHEVHGSAILRLEFLKSVHSFDAADGHVKVRLKRNHPQCNQADLLD
VQDDVEQRFGATFLSLGYVGGKGPELRVGWANGKGSGIIGDNKWDAETLI
SALSDPPSRNSELPGILNLLEEECVKYVTWEGWENIDAVERGRAQRYGRN
GGRVKLETVQEMLQVANQPSPGVLKSQR*

mRNA from alignment at tig00000081_pilon:283066..284802-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6564.t1 ID=Ggra6564.t1|Name=Ggra6564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000081_pilon:283066..284802- (Gracilaria gracilis GNS1m male)
ATGAGGAGCGAAACAGCGTTCTGGAAGAATGTAGAATTGCCGCGAATAAT
ATTTGGAAAGACAATGAAGACGATCAAGACGATACAAGTCCCAGAGATTG
GTGTCGTCGTGGAAATCACCCACGATGGCAGCGAAAGCGCAATCGGCGAC
TATCTCCCTGGCGCATTCCGCGACGTTTCGCGAAGCTTCGCGACGTTTCA
AAGTGCTCACGCGTGCGCGTCTGATTGGTTGGGCTTTCCAAAAAATCTAC
AGGGCGGACGCTGTCCAATCAGAAGGCTATCCCGGAGGCGCATCAGATGT
GATGCGCAGGTATGGCTACACACGCAAGTCGGCCCCCGGCTCATGCGTCT
CGCCGCCCCGACCATCATTGCGCCCGCGTCTGCTCGGCGGCTTCTCCACA
TGCGTGCGGCGGTTGTCGGAGCCGGACCGGCCGGCATTTACGCGGCGCAG
TCGCTTCTAAAACGCTTCCCAACATGTACCATCGACATCATCGAGGCGCT
TCCCGTGCCCTTCGGGCTCGTTCGATACGGCGTGTCGCCCGATCACCCGG
CCACAAAGAACGTGATCAACCAGTTTTCTTCGTTCATTCGCACAAACCGC
CACAGAATCAACTTTTTCGGCAACGTCCCAGTGCATGAACGCCACTTAAT
CACGCCGAAACGGCTGGACGACTTGTATGATTTGAGCGTGTATGCCACCG
GTGCCGCACATCCACGAGGTCTTACTGATGTTTCCATCCCTTCTCGGTTT
GTTTATAGCGCACAAGATTTTGTGTTCTGGATGAATGGCCACCCCGATGT
GTGTGGCACATCGCTTCCGAATTCACTTTCGACCAGTATTTACCGCGATT
TGAAGTCTGCTGATCAAGTTGCTGTCATAGGAGTGGGCAACGTTGCAATT
GATGTTGCTCGCCTCTTACTCCGCCCCGTGCAGGACTTGTATGACACCGA
CATTTCACAATCTGCGCTTGAGTTTCTATCCCAATCGCCTGTCAAATCCG
TCACTTTGTTCGGTCGCAAAAGTCCCGTGGGTGCTTCATGGACTACTCCA
GCTTTGCGAGAAGTCGTTACCAAGATTCCAGCTATTGTCACCGCTTGTGA
TCACGCCCTTGTGCAAAGAGATTTCGATTCTGCTCAGCTCCCCAGAGCGA
AGAAGTCTATGTTGAAGATTTTGCTAGAAAGAACTGTCGATATTAAGTCT
GCTCAGCTGCATTATCACGAGGTCCACGGCAGTGCTATACTACGCCTCGA
GTTTTTAAAATCCGTTCATTCGTTTGATGCCGCCGATGGTCATGTAAAAG
TGCGATTGAAACGGAATCACCCGCAATGCAACCAAGCCGATCTTTTAGAT
GTACAAGACGATGTGGAACAGCGTTTTGGTGCGACATTTCTTAGTCTGGG
ATATGTTGGAGGAAAAGGTCCGGAGCTGAGAGTTGGATGGGCGAATGGGA
AAGGCTCTGGAATCATTGGTGACAACAAGTGGGACGCTGAAACCCTCATC
AGTGCACTTTCAGACCCTCCATCACGGAACTCTGAGCTGCCTGGAATACT
CAATTTACTCGAAGAAGAATGTGTGAAGTATGTTACTTGGGAAGGATGGG
AGAATATTGATGCTGTGGAAAGAGGACGGGCGCAACGCTATGGTAGAAAT
GGTGGTCGCGTAAAGCTTGAAACAGTTCAGGAAATGCTGCAGGTTGCAAA
TCAACCGTCGCCTGGCGTTTTGAAGTCTCAGAGATGA

Coding sequence (CDS) from alignment at tig00000081_pilon:283066..284802-

>Ggra6564.t1 ID=Ggra6564.t1|Name=Ggra6564.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00000081_pilon:283066..284802- (Gracilaria gracilis GNS1m male)
ATGAGGAGCGAAACAGCGTTCTGGAAGAATGTAGAATTGCCGCGAATAAT
ATTTGGAAAGACAATGAAGACGATCAAGACGATACAAGTCCCAGAGATTG
GTGTCGTCGTGGAAATCACCCACGATGGCAGCGAAAGCGCAATCGGCGAC
TATCTCCCTGGCGCATTCCGCGACGTTTCGCGAAGCTTCGCGACGTTTCA
AAGTGCTCACGCGTGCGCGTCTGATTGGTTGGGCTTTCCAAAAAATCTAC
AGGGCGGACGCTGTCCAATCAGAAGGCTATCCCGGAGGCGCATCAGATGT
GATGCGCAGGTATGGCTACACACGCAAGTCGGCCCCCGGCTCATGCGTCT
CGCCGCCCCGACCATCATTGCGCCCGCGTCTGCTCGGCGGCTTCTCCACA
TGCGTGCGGCGGTTGTCGGAGCCGGACCGGCCGGCATTTACGCGGCGCAG
TCGCTTCTAAAACGCTTCCCAACATGTACCATCGACATCATCGAGGCGCT
TCCCGTGCCCTTCGGGCTCGTTCGATACGGCGTGTCGCCCGATCACCCGG
CCACAAAGAACGTGATCAACCAGTTTTCTTCGTTCATTCGCACAAACCGC
CACAGAATCAACTTTTTCGGCAACGTCCCAGTGCATGAACGCCACTTAAT
CACGCCGAAACGGCTGGACGACTTGTATGATTTGAGCGTGTATGCCACCG
GTGCCGCACATCCACGAGGTCTTACTGATGTTTCCATCCCTTCTCGGTTT
GTTTATAGCGCACAAGATTTTGTGTTCTGGATGAATGGCCACCCCGATGT
GTGTGGCACATCGCTTCCGAATTCACTTTCGACCAGTATTTACCGCGATT
TGAAGTCTGCTGATCAAGTTGCTGTCATAGGAGTGGGCAACGTTGCAATT
GATGTTGCTCGCCTCTTACTCCGCCCCGTGCAGGACTTGTATGACACCGA
CATTTCACAATCTGCGCTTGAGTTTCTATCCCAATCGCCTGTCAAATCCG
TCACTTTGTTCGGTCGCAAAAGTCCCGTGGGTGCTTCATGGACTACTCCA
GCTTTGCGAGAAGTCGTTACCAAGATTCCAGCTATTGTCACCGCTTGTGA
TCACGCCCTTGTGCAAAGAGATTTCGATTCTGCTCAGCTCCCCAGAGCGA
AGAAGTCTATGTTGAAGATTTTGCTAGAAAGAACTGTCGATATTAAGTCT
GCTCAGCTGCATTATCACGAGGTCCACGGCAGTGCTATACTACGCCTCGA
GTTTTTAAAATCCGTTCATTCGTTTGATGCCGCCGATGGTCATGTAAAAG
TGCGATTGAAACGGAATCACCCGCAATGCAACCAAGCCGATCTTTTAGAT
GTACAAGACGATGTGGAACAGCGTTTTGGTGCGACATTTCTTAGTCTGGG
ATATGTTGGAGGAAAAGGTCCGGAGCTGAGAGTTGGATGGGCGAATGGGA
AAGGCTCTGGAATCATTGGTGACAACAAGTGGGACGCTGAAACCCTCATC
AGTGCACTTTCAGACCCTCCATCACGGAACTCTGAGCTGCCTGGAATACT
CAATTTACTCGAAGAAGAATGTGTGAAGTATGTTACTTGGGAAGGATGGG
AGAATATTGATGCTGTGGAAAGAGGACGGGCGCAACGCTATGGTAGAAAT
GGTGGTCGCGTAAAGCTTGAAACAGTTCAGGAAATGCTGCAGGTTGCAAA
TCAACCGTCGCCTGGCGTTTTGAAGTCTCAGAGATGA