Ggra6612.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6612.t1
Unique NameGgra6612.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:574854..575813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6612Ggra6612Gracilaria gracilis GNS1m malegenetig00000081_pilon 574854..575813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6612.t1Ggra6612.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 574854..575813 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6612.t1.start1Ggra6612.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 574854..574856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6612.t1.CDS1Ggra6612.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 574854..575134 +
Ggra6612.t1.CDS2Ggra6612.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 575267..575813 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6612.t1.exon1Ggra6612.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 574854..575134 +
Ggra6612.t1.exon2Ggra6612.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 575267..575813 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6612.t1.intron1Ggra6612.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 575135..575266 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6612.t1.stop1Ggra6612.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 575811..575813 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6612.t1 ID=Ggra6612.t1|Name=Ggra6612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MGVQNNEGLGQTLLRNQFAVYVAELLSARLNFPEHTSHHGYNLADFFDRC
GSSSSLSKVGTPKVPEHCILRKKELFLLNCPRGDCSCLRRETMRPYNAIH
YRQGDLKAKHGEHPDWMHMLNNVLSFMCRHSDRDIVIVTQGTPEVPKCEN
RVVLAGNTSERDSFPIIQHAQWIGVEHSGFGLAMMQISNPERIFMDTYAM
KFYDWLTKPEWTVFNSAGAGFSFASGQDALDAKFSGAGLDVRTLRSPALK
RFDHFETEVPVRRWEKEALPIDRDG*
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spliced messenger RNA

>Ggra6612.t1 ID=Ggra6612.t1|Name=Ggra6612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000081_pilon:574854..575813+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTCCAGAATAATGAAGGGTTAGGTCAGACGCTGCTTCGCAATCA
ATTCGCAGTTTACGTTGCTGAGCTGCTCTCAGCCAGACTCAACTTCCCCG
AACATACTAGTCACCACGGATACAACCTCGCCGACTTTTTTGATCGATGC
GGCTCATCATCTAGCTTGTCCAAAGTGGGCACCCCAAAGGTTCCGGAACA
TTGCATCCTGAGAAAGAAGGAGTTGTTTCTACTAAACTGTCCCCGCGGAG
ACTGTTCTTGTTTACGAAGAGAGACTATGAGACCGTACAACGCGATTCAC
TACCGACAGGGTGACCTGAAAGCGAAGCACGGCGAACATCCGGATTGGAT
GCATATGCTGAATAACGTCCTTAGCTTCATGTGCCGACATAGCGATCGAG
ACATTGTCATTGTCACCCAGGGGACGCCAGAAGTGCCGAAGTGCGAAAAT
CGCGTGGTGCTGGCAGGGAACACGTCCGAGCGCGATTCGTTCCCGATTAT
ACAGCATGCGCAATGGATCGGGGTAGAGCACAGCGGCTTTGGACTGGCGA
TGATGCAGATATCTAACCCAGAGCGCATCTTCATGGACACCTACGCTATG
AAGTTTTATGACTGGCTCACGAAACCGGAATGGACCGTTTTCAACAGCGC
AGGTGCCGGTTTCTCTTTTGCCTCCGGCCAAGATGCCCTCGACGCGAAGT
TCAGTGGTGCTGGATTGGATGTGCGAACCCTTCGTTCCCCGGCTCTTAAG
CGATTCGACCACTTTGAGACGGAGGTACCGGTTCGAAGGTGGGAGAAGGA
AGCCTTACCAATCGACAGGGATGGATAA
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protein sequence of Ggra6612.t1

>Ggra6612.t1 ID=Ggra6612.t1|Name=Ggra6612.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MGVQNNEGLGQTLLRNQFAVYVAELLSARLNFPEHTSHHGYNLADFFDRC
GSSSSLSKVGTPKVPEHCILRKKELFLLNCPRGDCSCLRRETMRPYNAIH
YRQGDLKAKHGEHPDWMHMLNNVLSFMCRHSDRDIVIVTQGTPEVPKCEN
RVVLAGNTSERDSFPIIQHAQWIGVEHSGFGLAMMQISNPERIFMDTYAM
KFYDWLTKPEWTVFNSAGAGFSFASGQDALDAKFSGAGLDVRTLRSPALK
RFDHFETEVPVRRWEKEALPIDRDG*
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mRNA from alignment at tig00000081_pilon:574854..575813+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6612.t1 ID=Ggra6612.t1|Name=Ggra6612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000081_pilon:574854..575813+ (Gracilaria gracilis GNS1m male)
ATGGGTGTCCAGAATAATGAAGGGTTAGGTCAGACGCTGCTTCGCAATCA
ATTCGCAGTTTACGTTGCTGAGCTGCTCTCAGCCAGACTCAACTTCCCCG
AACATACTAGTCACCACGGATACAACCTCGCCGACTTTTTTGATCGATGC
GGCTCATCATCTAGCTTGTCCAAAGTGGGCACCCCAAAGGTTCCGGAACA
TTGCATCCTGAGAAAGAAGGAGTTGTTTCTACTAAACTGTCCCCGCGGAG
ACTGTTCTTGTTTACGAAGAGAGACTATGAGGTATGTACTTCCGTTGGCG
TCCCGCTGTGACGTCATCGGCGTGGAACATGATGGCTTCAAGACACAGGA
GTACTCCGGTTGTATTTCGAACGTACTGAAACGCTACTTTGGTGGTCCCG
ACCGCTGGCCTAGACCGTACAACGCGATTCACTACCGACAGGGTGACCTG
AAAGCGAAGCACGGCGAACATCCGGATTGGATGCATATGCTGAATAACGT
CCTTAGCTTCATGTGCCGACATAGCGATCGAGACATTGTCATTGTCACCC
AGGGGACGCCAGAAGTGCCGAAGTGCGAAAATCGCGTGGTGCTGGCAGGG
AACACGTCCGAGCGCGATTCGTTCCCGATTATACAGCATGCGCAATGGAT
CGGGGTAGAGCACAGCGGCTTTGGACTGGCGATGATGCAGATATCTAACC
CAGAGCGCATCTTCATGGACACCTACGCTATGAAGTTTTATGACTGGCTC
ACGAAACCGGAATGGACCGTTTTCAACAGCGCAGGTGCCGGTTTCTCTTT
TGCCTCCGGCCAAGATGCCCTCGACGCGAAGTTCAGTGGTGCTGGATTGG
ATGTGCGAACCCTTCGTTCCCCGGCTCTTAAGCGATTCGACCACTTTGAG
ACGGAGGTACCGGTTCGAAGGTGGGAGAAGGAAGCCTTACCAATCGACAG
GGATGGATAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:574854..575813+

>Ggra6612.t1 ID=Ggra6612.t1|Name=Ggra6612.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000081_pilon:574854..575813+ (Gracilaria gracilis GNS1m male)
ATGGGTGTCCAGAATAATGAAGGGTTAGGTCAGACGCTGCTTCGCAATCA
ATTCGCAGTTTACGTTGCTGAGCTGCTCTCAGCCAGACTCAACTTCCCCG
AACATACTAGTCACCACGGATACAACCTCGCCGACTTTTTTGATCGATGC
GGCTCATCATCTAGCTTGTCCAAAGTGGGCACCCCAAAGGTTCCGGAACA
TTGCATCCTGAGAAAGAAGGAGTTGTTTCTACTAAACTGTCCCCGCGGAG
ACTGTTCTTGTTTACGAAGAGAGACTATGAGACCGTACAACGCGATTCAC
TACCGACAGGGTGACCTGAAAGCGAAGCACGGCGAACATCCGGATTGGAT
GCATATGCTGAATAACGTCCTTAGCTTCATGTGCCGACATAGCGATCGAG
ACATTGTCATTGTCACCCAGGGGACGCCAGAAGTGCCGAAGTGCGAAAAT
CGCGTGGTGCTGGCAGGGAACACGTCCGAGCGCGATTCGTTCCCGATTAT
ACAGCATGCGCAATGGATCGGGGTAGAGCACAGCGGCTTTGGACTGGCGA
TGATGCAGATATCTAACCCAGAGCGCATCTTCATGGACACCTACGCTATG
AAGTTTTATGACTGGCTCACGAAACCGGAATGGACCGTTTTCAACAGCGC
AGGTGCCGGTTTCTCTTTTGCCTCCGGCCAAGATGCCCTCGACGCGAAGT
TCAGTGGTGCTGGATTGGATGTGCGAACCCTTCGTTCCCCGGCTCTTAAG
CGATTCGACCACTTTGAGACGGAGGTACCGGTTCGAAGGTGGGAGAAGGA
AGCCTTACCAATCGACAGGGATGGATAA
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