Ggra6595.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6595.t1
Unique NameGgra6595.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Homology
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A2V3J3X6 (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3X6_9FLOR)

HSP 1 Score: 346 bits (888), Expect = 9.250e-120
Identity = 156/182 (85.71%), Postives = 176/182 (96.70%), Query Frame = 0
Query:   35 MAEKSPSVPFMDVPAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILPKL 216
            MAEKSPSVPFMD P+ L+PDM GYVGFDPFNIS+++N+KWLQEAEIKHARICLLAILG +VAEVYQFPWY DYPH+V+YRHNWAV+NGSL+QILLWCSFFEIMTMPAVTQM+TG+SDR+PGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAM+A+SGAIHHAA++NQNL+EQL +GNILPKL
Sbjct:    1 MAEKSPSVPFMDAPSRLTPDMAGYVGFDPFNISAFLNVKWLQEAEIKHARICLLAILGFMVAEVYQFPWYSDYPHVVIYRHNWAVTNGSLSQILLWCSFFEIMTMPAVTQMVTGRSDREPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMIAVSGAIHHAAVTNQNLIEQLTAGNILPKL 182          
BLAST of Ggra6595.t1 vs. uniprot
Match: R7QQW5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQW5_CHOCR)

HSP 1 Score: 314 bits (804), Expect = 1.960e-106
Identity = 149/214 (69.63%), Postives = 172/214 (80.37%), Query Frame = 0
Query:    1 MAFISSFVPSFAGVRATFGARVCAASRRGASAVVMAEKSPSVPFMDVPAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            MAF+ SF        A  GA+V AA     + V M  KSPSVPFMDVPA LSPDMPGYVGFDP NIS Y+N+K+LQEAEIKH R+CLLAILG IVAEVYQFPWYK+YPHLV+ RHNW V+NGS+ Q+L+W SF+EIMT PA  QM+ G+SDR+PG F FDPLGLGK+P KLA YKVNEIKNGRLAM+A+SGAIHHAAIS QN+ EQ+ SG +LP
Sbjct:    2 MAFVGSFTAPALSRNAFAGAKVSAAPSHVVARVSMQTKSPSVPFMDVPANLSPDMPGYVGFDPLNISDYLNVKFLQEAEIKHCRVCLLAILGMIVAEVYQFPWYKEYPHLVIDRHNWGVTNGSMLQLLIWISFWEIMTTPATIQMVNGQSDREPGYFGFDPLGLGKNPDKLATYKVNEIKNGRLAMIAVSGAIHHAAISQQNMFEQITSGGLLP 215          
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A5J4YYC4 (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYC4_PORPP)

HSP 1 Score: 212 bits (539), Expect = 3.340e-66
Identity = 108/212 (50.94%), Postives = 144/212 (67.92%), Query Frame = 0
Query:    5 SSFVPSFAGVRATFG-ARVCAASRRGASAVVMAEKSPSVPFMDVPAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNW-AVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            ++FV      RA+ G A VC  + +    V M  KS SVPFMD P AL   + G VGFDP NIS ++NIKWL+E+E+KH RIC+LA LG IV EVY+FP+Y+  P +    H++ A  NG L Q+L++ SFFEIMT PAV QMITG+SDR PG F FDPLGLGK+P     ++V+E+KNGRLAM+A+ G +H   ++   ++ QL +G  +P
Sbjct:    7 AAFVSGVGLARASVGRAAVCTKNVQ----VSMMAKSKSVPFMDAPPALDGSLAGDVGFDPLNISGFLNIKWLRESELKHGRICMLAALGMIVQEVYRFPFYQGAPAVATEAHDYFAKWNGPLGQVLIFASFFEIMTTPAVIQMITGESDRAPGYFAFDPLGLGKNPDARKRFEVSELKNGRLAMIAVGGMVHQMWLTKMGIIGQLQAGKFMP 214          
BLAST of Ggra6595.t1 vs. uniprot
Match: chlorophyll a/b-binding protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA46561 (chlorophyll a/b-binding protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA46561)

HSP 1 Score: 211 bits (538), Expect = 1.020e-65
Identity = 118/219 (53.88%), Postives = 146/219 (66.67%), Query Frame = 0
Query:    1 MAFISSFVPSFAGVRATFGARVCAASR---RGASAVVMAEKSPSVPFMDVPAALS--PDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            MAF+ +FVPS A V +  GA    A+R   R A+ V M   S SVPFM+VP AL+  P+MPG V FDP NISSY+ IKW+QEAEIKH RIC+LA LG +V E + FP+YK+ PHL    H++ V  G +  IL+    FE +T PAV QMI G  DR+PG F FDPL LGK+P+    + VNEIKNGRLAM+ I G IH   ++NQ  +EQL  GN LP
Sbjct:   25 MAFVGTFVPSPAAVLSR-GATARVAARPVARSATTVTM-RASKSVPFMEVPPALAANPNMPGNVEFDPLNISSYLPIKWMQEAEIKHGRICMLACLGLLVQEFFTFPFYKNAPHLATAGHDYGVKVGGMVHILIGVIIFEALTTPAVIQMING-GDREPGYFGFDPLKLGKNPS----FAVNEIKNGRLAMIGIGGMIHQQWMTNQGSIEQLFKGNFLP 236          
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A5J4YN76 (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN76_PORPP)

HSP 1 Score: 207 bits (528), Expect = 1.770e-64
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 0
Query:    4 ISSFVPSFAGVRATFGARVCAASRRGASAVVMAEKSPSVPFMDVPAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMT-MPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            +++FV S    RA+ G R    ++ G++ + M  KS SVPFM+ PAAL   M G VGFDP   S+Y+++K+L+EAE+KH RIC+LA LG IV EVYQFP+Y   P L    H++ V  GSL QILL+ SF E++   P + Q + G++DR PG F FDPLGLGKD AK   Y+++E+KNGRLAM+A+ G IH A ++   +LEQL +G +LP
Sbjct:    8 MAAFVSSLGLARASVG-RGAVCTKPGSAQLSMMAKSKSVPFMEAPAALDGSMVGDVGFDPLGFSNYIDLKFLREAELKHCRICMLAALGIIVQEVYQFPFYSGAPRLATDAHDYFVKFGSLNQILLFASFIELVAGTPGIIQTMRGETDRAPGYFAFDPLGLGKDKAKFERYQLSELKNGRLAMIAVGGFIHQAWMAKVPVLEQLSTGKLLP 218          
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A1X6P6J5 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6J5_PORUM)

HSP 1 Score: 207 bits (526), Expect = 3.120e-64
Identity = 115/218 (52.75%), Postives = 143/218 (65.60%), Query Frame = 0
Query:    1 MAFISSFVPSFAGV-RATFGARVCA-ASRRGASAVVMAEKSPSVPFMDVPAALS--PDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            MAF+S+FVP+ + V R    ARV   A  R  S V M   S SVPFM+VP  L+  P MPG V FDP NIS+Y+ IKWLQEAEIKH R+C+LA LG +V E + FP+YK+ PHL    H++ V  G +  IL+    +E +T PAV QMI G  DR+PG F FDPL LGK+PA    + VNE+KNGRLAM+ I G IH   ++NQ  +EQL  GN LP
Sbjct:    1 MAFVSTFVPAVSAVLRRGAPARVSTRAVARSVSTVTM-RASKSVPFMEVPPVLAENPSMPGNVEFDPLNISAYLPIKWLQEAEIKHGRVCMLACLGLLVQEFFTFPFYKNAPHLATSGHDYGVKVGGMVHILMAVVIWEALTTPAVVQMING-GDRKPGYFGFDPLNLGKNPA----FAVNEVKNGRLAMIGIGGMIHQQWMTNQGSVEQLLKGNFLP 212          
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A7S0ZC59 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZC59_9RHOD)

HSP 1 Score: 203 bits (517), Expect = 1.690e-63
Identity = 94/168 (55.95%), Postives = 122/168 (72.62%), Query Frame = 0
Query:   48 PAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNW-AVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            P+AL   M G VGFDP  IS ++NIKWL+EAE+KH RIC+LA LG +V E+Y FP+Y   PH+    H++ A  NG L QILL+ SFFEIMT PA+ QM+TG+SDR PGDFKFDPL L K+   +  +++NE+KNGRLAM+AI G +H A ++N   +EQL SG  +P
Sbjct:    2 PSALDGSMAGDVGFDPLGISDFLNIKWLREAELKHGRICMLAALGWLVQEIYTFPFYPGAPHVPTAAHDYFAKWNGPLGQILLFTSFFEIMTTPAIIQMVTGESDRMPGDFKFDPLKLAKNEETMKKFQLNEVKNGRLAMIAIGGLVHQAWLTNMGAIEQLQSGKFIP 169          
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A7S2ZRW4 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRW4_9RHOD)

HSP 1 Score: 203 bits (517), Expect = 7.690e-63
Identity = 108/216 (50.00%), Postives = 141/216 (65.28%), Query Frame = 0
Query:    2 AFISSFVPSFAGVRATF-GARVCAASRRGASAVVMAEKSPSVPFMDVPAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGK--DPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            AF+ SF PS    R TF GAR+  A  R A+ V M  KS SVPFMD P AL   M G VGFDP N S+Y+ + WL+EAEIKH R+C+LA LG +  E Y FP+Y + P L    H++  +  +LAQ+LL+   +EI+T PAV QM+TGKSDR+PG F FDPL L    DPAK   Y+++E+KNGRLAM+AI G +H A ++    + Q+ +G   P
Sbjct:    3 AFVGSFAPSRL-TRTTFAGARLSGAPVRSAARVTMQAKSKSVPFMDCPKALDGSMVGDVGFDPLNFSAYLPLSWLREAEIKHCRLCMLAALGWLTTEFYTFPFYANAPKLPTDAHDYF-TRTALAQVLLFVCVWEILTTPAVIQMVTGKSDRKPGYFGFDPLNLTSKWDPAKFEKYQLSELKNGRLAMIAIGGLVHQAWLTKMPAIAQIQAGKFFP 216          
BLAST of Ggra6595.t1 vs. uniprot
Match: Q7XY91 (Light-harvest protein (Fragment) n=2 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY91_GRIJA)

HSP 1 Score: 198 bits (504), Expect = 3.240e-62
Identity = 88/119 (73.95%), Postives = 103/119 (86.55%), Query Frame = 0
Query:   97 EVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILPK 215
            E+Y FP+Y   PHL + RH+W V NGS+ QILLWCSFFEIMTMPA+ QM+ G+ DR PGDF FDPLGLGKDPAKLAV+KVNE+KNGRLAM A+SGAIHHAAI+NQNL+EQL SGN++PK
Sbjct:    1 ELYTFPFYSGAPHLAINRHDWGVENGSMKQILLWCSFFEIMTMPALVQMLNGQGDRVPGDFCFDPLGLGKDPAKLAVFKVNEVKNGRLAMCAVSGAIHHAAITNQNLVEQLTSGNVIPK 119          
BLAST of Ggra6595.t1 vs. uniprot
Match: A0A2V3J1F6 (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1F6_9FLOR)

HSP 1 Score: 199 bits (506), Expect = 3.800e-61
Identity = 103/218 (47.25%), Postives = 140/218 (64.22%), Query Frame = 0
Query:    1 MAFISSF-VPSFAGVR--ATFGARVCAASRRGASAVVMAEKSPSVPFMDVPAALSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQFPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMT-MPAVTQMITGKSDRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISNQNLLEQLGSGNILP 214
            MAF+SSF +P+   +   A  GA++ +      ++V MAE S ++PF+  P  +  D  GY GFDP   ++ MN K+LQEAEIKHARIC+LA+LG ++ E Y FPWY + P L    H W V+ GSL QIL+W SF+EI+   PA+ QM+T  S RQPG + FDPLGLGK  A    ++ +EIKNGRLAM+AI G +H   ++    ++QL  G  LP
Sbjct:    1 MAFVSSFTLPARQTLSRSAICGAKLASQPVPSRASVRMAETSAAIPFLPKPQNIPEDAAGYAGFDPLGFTNVMNFKFLQEAEIKHARICMLAVLGILIPEQYVFPWYSEAPKLAAGIHQWGVNQGSLNQILIWSSFWEIVVGTPALIQMLTLDSPRQPGYYAFDPLGLGKTQAAFKRFQTSEIKNGRLAMIAIGGLLHQEFLTGMTPVQQLLEGKFLP 218          
The following BLAST results are available for this feature:
BLAST of Ggra6595.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3X69.250e-12085.71Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
R7QQW51.960e-10669.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YYC43.340e-6650.94Chlorophyll a-b binding protein, chloroplastic n=1... [more]
chlorophyll a/b-binding protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA465611.020e-6553.88chlorophyll a/b-binding protein n=1 Tax=Escherichi... [more]
A0A5J4YN761.770e-6450.00Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A1X6P6J53.120e-6452.75Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZC591.690e-6355.95Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2ZRW47.690e-6350.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
Q7XY913.240e-6273.95Light-harvest protein (Fragment) n=2 Tax=Griffiths... [more]
A0A2V3J1F63.800e-6147.25Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 48..196
e-value: 3.0E-36
score: 125.4
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 38..214
e-value: 3.0E-42
score: 146.8
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 17..207
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 105..123
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 143..216
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..84
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 34..209
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 17..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:484521..485273 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6595.t1Ggra6595.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 484521..485273 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6595.t1 ID=Ggra6595.t1|Name=Ggra6595.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MAFISSFVPSFAGVRATFGARVCAASRRGASAVVMAEKSPSVPFMDVPAA
LSPDMPGYVGFDPFNISSYMNIKWLQEAEIKHARICLLAILGCIVAEVYQ
FPWYKDYPHLVVYRHNWAVSNGSLAQILLWCSFFEIMTMPAVTQMITGKS
DRQPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMVAISGAIHHAAISN
QNLLEQLGSGNILPKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln