Ggra2865.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2865.t1
Unique NameGgra2865.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000077_piloncontigtig00000077_pilon:228951..229667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2865Ggra2865Gracilaria gracilis GNS1m malegenetig00000077_pilon 228951..229667 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2865.t1.start1Ggra2865.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000077_pilon 228951..228953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2865.t1.CDS1Ggra2865.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000077_pilon 228951..229667 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2865.t1.exon1Ggra2865.t1.exon1Gracilaria gracilis GNS1m maleexontig00000077_pilon 228951..229667 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2865.t1.stop1Ggra2865.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000077_pilon 229665..229667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2865.t1Ggra2865.t1Gracilaria gracilis GNS1m malepolypeptidetig00000077_pilon 228951..229667 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2865.t1 ID=Ggra2865.t1|Name=Ggra2865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MITTVLNALSSVITIPAELFAVLIKLLLFALAILLARCFVRSATRIDTRN
ITTCGCNCIVISPYSSNGVKMTHIAGCLYCDRANHLKVAAQQTLTTLRSK
RNTQGFWAFTGATISFLGSSKTGSILENFRCSSVGVAVKTGRFFCINNAV
NRLKPFLFDVLENRPRISGCRCDPSDSTSSVSGFCDLSGGKYDALMNKAP
NGHAVKLDRKELLSHFVSEMGEGSTLVNAALGFLGFSL*
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spliced messenger RNA

>Ggra2865.t1 ID=Ggra2865.t1|Name=Ggra2865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000077_pilon:228951..229667+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACCACCGTCCTAAACGCCCTCTCCTCTGTGATCACAATTCCCGC
CGAGCTCTTTGCCGTACTCATCAAACTTCTGCTCTTCGCATTGGCCATTC
TACTTGCCAGATGCTTCGTCCGTAGTGCGACCAGGATTGACACCCGGAAT
ATCACCACTTGCGGATGCAATTGCATCGTAATCAGTCCGTACAGCTCCAA
CGGTGTCAAAATGACTCACATTGCCGGCTGTCTCTACTGCGATCGTGCCA
ACCATCTTAAAGTTGCCGCACAGCAAACTCTCACAACTCTTCGCAGCAAG
CGTAACACTCAAGGCTTTTGGGCATTCACCGGAGCCACAATATCGTTTTT
GGGTTCTTCAAAAACTGGATCCATCCTCGAAAACTTTCGTTGCAGTTCCG
TTGGTGTGGCCGTCAAGACCGGTCGTTTTTTCTGCATCAACAACGCAGTC
AATCGTCTCAAGCCATTTTTGTTTGACGTATTGGAAAACCGTCCGCGTAT
TTCAGGCTGTCGGTGTGATCCATCTGATTCTACTTCCTCTGTATCGGGAT
TCTGCGATCTTTCGGGTGGAAAGTATGATGCTTTGATGAACAAAGCCCCT
AATGGCCATGCGGTTAAACTTGATCGCAAAGAACTTCTCAGTCACTTTGT
GTCCGAGATGGGTGAAGGGAGCACTTTGGTTAATGCGGCGCTAGGCTTCC
TTGGCTTTTCGTTATGA
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protein sequence of Ggra2865.t1

>Ggra2865.t1 ID=Ggra2865.t1|Name=Ggra2865.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MITTVLNALSSVITIPAELFAVLIKLLLFALAILLARCFVRSATRIDTRN
ITTCGCNCIVISPYSSNGVKMTHIAGCLYCDRANHLKVAAQQTLTTLRSK
RNTQGFWAFTGATISFLGSSKTGSILENFRCSSVGVAVKTGRFFCINNAV
NRLKPFLFDVLENRPRISGCRCDPSDSTSSVSGFCDLSGGKYDALMNKAP
NGHAVKLDRKELLSHFVSEMGEGSTLVNAALGFLGFSL*
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mRNA from alignment at tig00000077_pilon:228951..229667+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2865.t1 ID=Ggra2865.t1|Name=Ggra2865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000077_pilon:228951..229667+ (Gracilaria gracilis GNS1m male)
ATGATCACCACCGTCCTAAACGCCCTCTCCTCTGTGATCACAATTCCCGC
CGAGCTCTTTGCCGTACTCATCAAACTTCTGCTCTTCGCATTGGCCATTC
TACTTGCCAGATGCTTCGTCCGTAGTGCGACCAGGATTGACACCCGGAAT
ATCACCACTTGCGGATGCAATTGCATCGTAATCAGTCCGTACAGCTCCAA
CGGTGTCAAAATGACTCACATTGCCGGCTGTCTCTACTGCGATCGTGCCA
ACCATCTTAAAGTTGCCGCACAGCAAACTCTCACAACTCTTCGCAGCAAG
CGTAACACTCAAGGCTTTTGGGCATTCACCGGAGCCACAATATCGTTTTT
GGGTTCTTCAAAAACTGGATCCATCCTCGAAAACTTTCGTTGCAGTTCCG
TTGGTGTGGCCGTCAAGACCGGTCGTTTTTTCTGCATCAACAACGCAGTC
AATCGTCTCAAGCCATTTTTGTTTGACGTATTGGAAAACCGTCCGCGTAT
TTCAGGCTGTCGGTGTGATCCATCTGATTCTACTTCCTCTGTATCGGGAT
TCTGCGATCTTTCGGGTGGAAAGTATGATGCTTTGATGAACAAAGCCCCT
AATGGCCATGCGGTTAAACTTGATCGCAAAGAACTTCTCAGTCACTTTGT
GTCCGAGATGGGTGAAGGGAGCACTTTGGTTAATGCGGCGCTAGGCTTCC
TTGGCTTTTCGTTATGA
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Coding sequence (CDS) from alignment at tig00000077_pilon:228951..229667+

>Ggra2865.t1 ID=Ggra2865.t1|Name=Ggra2865.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000077_pilon:228951..229667+ (Gracilaria gracilis GNS1m male)
ATGATCACCACCGTCCTAAACGCCCTCTCCTCTGTGATCACAATTCCCGC
CGAGCTCTTTGCCGTACTCATCAAACTTCTGCTCTTCGCATTGGCCATTC
TACTTGCCAGATGCTTCGTCCGTAGTGCGACCAGGATTGACACCCGGAAT
ATCACCACTTGCGGATGCAATTGCATCGTAATCAGTCCGTACAGCTCCAA
CGGTGTCAAAATGACTCACATTGCCGGCTGTCTCTACTGCGATCGTGCCA
ACCATCTTAAAGTTGCCGCACAGCAAACTCTCACAACTCTTCGCAGCAAG
CGTAACACTCAAGGCTTTTGGGCATTCACCGGAGCCACAATATCGTTTTT
GGGTTCTTCAAAAACTGGATCCATCCTCGAAAACTTTCGTTGCAGTTCCG
TTGGTGTGGCCGTCAAGACCGGTCGTTTTTTCTGCATCAACAACGCAGTC
AATCGTCTCAAGCCATTTTTGTTTGACGTATTGGAAAACCGTCCGCGTAT
TTCAGGCTGTCGGTGTGATCCATCTGATTCTACTTCCTCTGTATCGGGAT
TCTGCGATCTTTCGGGTGGAAAGTATGATGCTTTGATGAACAAAGCCCCT
AATGGCCATGCGGTTAAACTTGATCGCAAAGAACTTCTCAGTCACTTTGT
GTCCGAGATGGGTGAAGGGAGCACTTTGGTTAATGCGGCGCTAGGCTTCC
TTGGCTTTTCGTTATGA
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