Ggra9146.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9146.t1
Unique NameGgra9146.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:93301..93819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4897.EEB09406
Preferred nameYAR1
PFAMsAnk_2,Ank_3,Ank_4,Ank_5
Max annot lvl4751|Fungi
KEGG koko:K06867
GOsGO:0000054,GO:0000056,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006979,GO:0008104,GO:0008150,GO:0009628,GO:0009987,GO:0015031,GO:0015833,GO:0015931,GO:0022613,GO:0030684,GO:0030688,GO:0031503,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0033750,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042274,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051082,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:1990904
Evalue2.87e-08
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,3A8BU@33154|Opisthokonta,3P7TZ@4751|Fungi,3QX9M@4890|Ascomycota,3MD72@451866|Taphrinomycotina
DescriptionRibosome biogenesis protein Nop8
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9146Ggra9146Gracilaria gracilis GNS1m malegenetig00000075_pilon 93301..93819 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9146.t1.start1Ggra9146.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 93301..93303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9146.t1.CDS1Ggra9146.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 93301..93819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9146.t1.exon1Ggra9146.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 93301..93819 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9146.t1.stop1Ggra9146.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 93817..93819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9146.t1Ggra9146.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 93301..93819 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9146.t1 ID=Ggra9146.t1|Name=Ggra9146.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MEQQSTSPPFTVRSSACELRAAARSGDLEATEQILARYDSSQPALHKLLP
AVLTAVDRESGNSALHLCCANGHEQLAQRLLTLHNNVNQKNASGSTPLHY
ACVTGQLDVVRVLLRHGALPVVENRFGKTALDEAYSGSHQHVVDFLIQHV
QCNATAPDLTEAEQAPSQQQPS*
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spliced messenger RNA

>Ggra9146.t1 ID=Ggra9146.t1|Name=Ggra9146.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000075_pilon:93301..93819+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAACAGTCCACCTCACCGCCGTTCACCGTACGCTCCAGCGCGTG
CGAGCTTCGCGCCGCCGCGCGCTCGGGCGATCTCGAAGCGACGGAGCAAA
TCCTCGCACGCTACGATTCGTCTCAGCCCGCGCTTCACAAGTTGTTACCG
GCGGTGCTCACCGCCGTCGACCGCGAGTCGGGCAACAGCGCGTTGCACCT
ATGTTGCGCAAACGGCCACGAGCAGCTGGCCCAACGTCTGCTGACGCTGC
ACAACAACGTCAATCAGAAGAATGCGTCGGGCTCAACGCCGTTGCATTAC
GCGTGCGTGACGGGGCAGCTTGACGTGGTGCGCGTCTTGCTGCGCCATGG
CGCTCTGCCCGTTGTGGAGAATCGGTTTGGTAAGACGGCGTTGGATGAGG
CTTATAGTGGCTCTCATCAGCACGTCGTCGACTTTTTAATTCAGCACGTA
CAATGCAACGCTACCGCTCCGGATCTCACGGAAGCGGAACAAGCGCCGTC
ACAACAACAGCCATCATGA
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protein sequence of Ggra9146.t1

>Ggra9146.t1 ID=Ggra9146.t1|Name=Ggra9146.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MEQQSTSPPFTVRSSACELRAAARSGDLEATEQILARYDSSQPALHKLLP
AVLTAVDRESGNSALHLCCANGHEQLAQRLLTLHNNVNQKNASGSTPLHY
ACVTGQLDVVRVLLRHGALPVVENRFGKTALDEAYSGSHQHVVDFLIQHV
QCNATAPDLTEAEQAPSQQQPS*
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mRNA from alignment at tig00000075_pilon:93301..93819+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9146.t1 ID=Ggra9146.t1|Name=Ggra9146.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000075_pilon:93301..93819+ (Gracilaria gracilis GNS1m male)
ATGGAGCAACAGTCCACCTCACCGCCGTTCACCGTACGCTCCAGCGCGTG
CGAGCTTCGCGCCGCCGCGCGCTCGGGCGATCTCGAAGCGACGGAGCAAA
TCCTCGCACGCTACGATTCGTCTCAGCCCGCGCTTCACAAGTTGTTACCG
GCGGTGCTCACCGCCGTCGACCGCGAGTCGGGCAACAGCGCGTTGCACCT
ATGTTGCGCAAACGGCCACGAGCAGCTGGCCCAACGTCTGCTGACGCTGC
ACAACAACGTCAATCAGAAGAATGCGTCGGGCTCAACGCCGTTGCATTAC
GCGTGCGTGACGGGGCAGCTTGACGTGGTGCGCGTCTTGCTGCGCCATGG
CGCTCTGCCCGTTGTGGAGAATCGGTTTGGTAAGACGGCGTTGGATGAGG
CTTATAGTGGCTCTCATCAGCACGTCGTCGACTTTTTAATTCAGCACGTA
CAATGCAACGCTACCGCTCCGGATCTCACGGAAGCGGAACAAGCGCCGTC
ACAACAACAGCCATCATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:93301..93819+

>Ggra9146.t1 ID=Ggra9146.t1|Name=Ggra9146.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000075_pilon:93301..93819+ (Gracilaria gracilis GNS1m male)
ATGGAGCAACAGTCCACCTCACCGCCGTTCACCGTACGCTCCAGCGCGTG
CGAGCTTCGCGCCGCCGCGCGCTCGGGCGATCTCGAAGCGACGGAGCAAA
TCCTCGCACGCTACGATTCGTCTCAGCCCGCGCTTCACAAGTTGTTACCG
GCGGTGCTCACCGCCGTCGACCGCGAGTCGGGCAACAGCGCGTTGCACCT
ATGTTGCGCAAACGGCCACGAGCAGCTGGCCCAACGTCTGCTGACGCTGC
ACAACAACGTCAATCAGAAGAATGCGTCGGGCTCAACGCCGTTGCATTAC
GCGTGCGTGACGGGGCAGCTTGACGTGGTGCGCGTCTTGCTGCGCCATGG
CGCTCTGCCCGTTGTGGAGAATCGGTTTGGTAAGACGGCGTTGGATGAGG
CTTATAGTGGCTCTCATCAGCACGTCGTCGACTTTTTAATTCAGCACGTA
CAATGCAACGCTACCGCTCCGGATCTCACGGAAGCGGAACAAGCGCCGTC
ACAACAACAGCCATCATGA
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