Ggra9199.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9199.t2
Unique Name	Ggra9199.t2
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	578

Homology

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BLAST of Ggra9199.t2 vs. uniprot
Match: A0A2V3IP84 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP84_9FLOR)

HSP 1 Score: 527 bits (1357), Expect = 2.220e-179
Identity = 335/571 (58.67%), Postives = 406/571 (71.10%), Query Frame = 0

Query:    1 MLRFAKLRRGGSSDVQLPPFDPESHPPGHATARMDPPAQDGKRSVEVSGAKMSLRSLFKQRPRQSRKQSADEVSVPSSINSTSPPSASASQVPSAESIVPTMTPEEKRAKEXXXXXXXXXXXXXXXXXXXXXXXXXNQSIITGVSFDPLPPLSGFDSASEDERERPPKQSQTDDFERRGSGTSSMRTSQEAPHLDIAAATLPRSHTDDAKLAEMFGAQALLTAPQPAKRSTLPSAPAEDANTGYASPGLNESAPKPPQNSFPQASDLIRPSKQPAPIGWGDAYDTVPSQPLYGTPSHLVQRGPTAIESALADKISRGRELALLAIEQEEQGNMGAAEAGYMKALGLLVPASKELDIGSELSRNARMAMKAKVQREASAMLDRCEQLRLFLKATAPSVPTDVPDMPKVGNSSSRSRGPRNKSPLRKTRTSLDEDPISPNSAVMPPRAKTK-KSKVKPQIYIPPXXXXAFQDNPRELFQRIEDRKNVLSAASVAFPSS--SDTLIKEGKAVHSRTRETHAKCFMCNETAHLSTPCNHEFCSNCGNQAVSVFGKCPVPGCTTQLTTESFSHILP 568
            MLRFAKLRRG S+DV++PP + ++ PP  + A  +    + +RS +V+ AK SLR+L  ++ R  RKQS D V   SS  S S PS+S  Q+ + +     +   ++RAK+   XXXXXXXXXXXXXXXXXX    NQS I  + ++PLPPLS FDSASEDER+     SQT    +  S T+    S  AP LDIA A LP +   DA+LAE+F AQAL T   P+  + +PSA AE  +  +        +  P   +F Q     R   QPAPIGWGDAYDT PSQPLYGTP+HL QRGPT ++ +LA+KI+RGR+LA LAIEQEEQGNMGAAEAGYMKAL LLVPASKELDIGSEL++NAR+++KAKVQREASAMLD+CEQLRLFLKATAP+VPTDVP+MP   NS+S    PRN SP R  R S DEDP+SP+SAV+PPR +T+ +S  K Q +IP XXXX+FQD+PREL QR+E RKNVLSAAS  FPS+  +  L K  ++V  R  ET+AKCFMC E AHL TPCNH FCS CGNQ VSVFGKCPVPGC T+LTTESF HI P
Sbjct:    1 MLRFAKLRRGASADVKMPPLETQATPP-KSPAPDEQEIDEERRSSDVAPAKKSLRALIWEKARHVRKQSTDGVPAASSTQSASSPSSSVPQLQNTDIPSDDIVEVKRRAKDARRXXXXXXXXXXXXXXXXXXRQRFNQSKIYDLPYEPLPPLSNFDSASEDERDPVRSLSQTHRHLQSASSTNPSLPSDAAPMLDIAQA-LPSNRNTDAQLAELFAAQAL-TGNNPS--TAVPSASAEATSPNHXXXXXXXXSTAP--IAFSQGGHARRLPTQPAPIGWGDAYDTAPSQPLYGTPAHLAQRGPTTVDPSLAEKINRGRQLAFLAIEQEEQGNMGAAEAGYMKALSLLVPASKELDIGSELNKNARLSLKAKVQREASAMLDKCEQLRLFLKATAPTVPTDVPNMP-TQNSTSYPTRPRNSSPPRTDRRSFDEDPVSPDSAVLPPRVETRTRSPKKSQRHIPXXXXXSFQDDPRELIQRLEHRKNVLSAASDVFPSAPNASVLHKPRQSVPKRL-ETYAKCFMCKENAHLKTPCNHAFCSICGNQTVSVFGKCPVPGCNTRLTTESFIHIAP 562

The following BLAST results are available for this feature:

BLAST of Ggra9199.t2 vs. uniprot

BLAST of Ggra9199.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IP84	2.220e-179	58.67	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..129
None	No IPR available	GENE3D	1.20.58.80		coord: 309..396 e-value: 2.6E-6 score: 29.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..450
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..190
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 510..558
IPR036181	MIT domain superfamily	SUPERFAMILY	116846	MIT domain	coord: 312..393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:364982..366715 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9199.t2	Ggra9199.t2	Gracilaria gracilis GNS1m male	mRNA	tig00000075_pilon 364982..366715 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9199.t2 ID=Ggra9199.t2|Name=Ggra9199.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=578bp
MLRFAKLRRGGSSDVQLPPFDPESHPPGHATARMDPPAQDGKRSVEVSGA
KMSLRSLFKQRPRQSRKQSADEVSVPSSINSTSPPSASASQVPSAESIVP
TMTPEEKRAKEARRKARRAERERKEREWNEENRERRNQSIITGVSFDPLP
PLSGFDSASEDERERPPKQSQTDDFERRGSGTSSMRTSQEAPHLDIAAAT
LPRSHTDDAKLAEMFGAQALLTAPQPAKRSTLPSAPAEDANTGYASPGLN
ESAPKPPQNSFPQASDLIRPSKQPAPIGWGDAYDTVPSQPLYGTPSHLVQ
RGPTAIESALADKISRGRELALLAIEQEEQGNMGAAEAGYMKALGLLVPA
SKELDIGSELSRNARMAMKAKVQREASAMLDRCEQLRLFLKATAPSVPTD
VPDMPKVGNSSSRSRGPRNKSPLRKTRTSLDEDPISPNSAVMPPRAKTKK
SKVKPQIYIPPPPPPAFQDNPRELFQRIEDRKNVLSAASVAFPSSSDTLI
KEGKAVHSRTRETHAKCFMCNETAHLSTPCNHEFCSNCGNQAVSVFGKCP
VPGCTTQLTTESFSHILPKNVHPGSRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036181	MIT_dom_sf