Ggra9235.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9235.t2
Unique NameGgra9235.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:456845..458206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000018979
Preferred nameWDTC1
PFAMsTPR_19,WD40
Max annot lvl33208|Metazoa
KEGG koko:K11807
GOsGO:0000122,GO:0001101,GO:0001701,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006355,GO:0006357,GO:0006464,GO:0006629,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008361,GO:0009269,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010605,GO:0010629,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0016043,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019318,GO:0019538,GO:0019725,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0035264,GO:0036211,GO:0040007,GO:0042221,GO:0042304,GO:0042393,GO:0042592,GO:0042826,GO:0043009,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043434,GO:0043687,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045717,GO:0045833,GO:0045892,GO:0045922,GO:0045934,GO:0046890,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055082,GO:0060255,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0098772,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1905952,GO:1905953,GO:2000112,GO:2000113,GO:2001141
Evalue4.91e-18
EggNOG OGsKOG1334@1|root,KOG1310@2759|Eukaryota,38DRV@33154|Opisthokonta,3BB28@33208|Metazoa,3CTM7@33213|Bilateria,481EQ@7711|Chordata
Descriptionnegative regulation of fatty acid biosynthetic process
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9235Ggra9235Gracilaria gracilis GNS1m malegenetig00000075_pilon 456056..458206 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t2.start1Ggra9235.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 456845..456847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t2.CDS1Ggra9235.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 456845..458206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t2.exon1Ggra9235.t2.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 456845..458206 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t2.stop1Ggra9235.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 458204..458206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t2Ggra9235.t2Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 456845..458206 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9235.t2 ID=Ggra9235.t2|Name=Ggra9235.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MHPAYVTFATFSSDASQIVASYYMDAVHVFNRRQQSQSGPYYPSFKFNSE
RKRVVWLLIQEAAERLLNGSVGCAKTAIAKANSVLELEPQNILALLYKAE
SLLLRENYSDFREAFETLQLLINLIREQPRLITALWGSDGPMCPPCFPES
IGNWERKAQIWLMIFEFQQIRAMYKMIPYSPVGVLQPGVNGLVTKRRFEH
LRELCSELMERRWKLFSKQPTSNGHRSTNSPGSMYDCSLLRDDIHRDALG
TEEESSRLYSTEFSRLRKQVLVRLVEKLASSKLNMLLFAFDEKIADLEPR
NPNSQTNRRLATTKEYWIRVMNQDHIPHHFARELKALEAEEKRLLAGFDS
EALWGVRPRKELPCKRYHGHQSEKTDIKEARFYGADNQVVLSGSDDGFVY
MWAAGTCELLTRVSADDQIVNCVLPHPYRSMILVSGIDNTIKVLTPDLSS
SEE*
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spliced messenger RNA

>Ggra9235.t2 ID=Ggra9235.t2|Name=Ggra9235.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000075_pilon:456845..458206+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCAGCTTACGTTACATTCGCCACCTTTTCATCAGATGCAAGCCA
GATTGTGGCATCGTACTATATGGATGCGGTTCATGTTTTCAATCGCCGTC
AACAATCACAGTCTGGGCCTTACTATCCAAGCTTCAAGTTCAACTCCGAA
AGGAAACGTGTAGTGTGGTTGTTGATTCAAGAGGCTGCTGAAAGGCTCTT
AAACGGTTCTGTGGGTTGCGCGAAAACTGCAATAGCGAAAGCCAACAGCG
TTCTCGAATTGGAACCCCAAAATATTCTTGCGTTACTCTATAAAGCCGAG
AGTTTGCTTTTGCGTGAAAACTATAGTGACTTTCGAGAAGCGTTTGAAAC
CCTTCAACTCTTAATCAACCTTATTAGGGAACAGCCTCGGCTTATAACTG
CTCTATGGGGATCCGATGGTCCAATGTGTCCACCATGCTTTCCAGAATCC
ATAGGTAACTGGGAACGAAAGGCGCAGATATGGTTGATGATCTTCGAGTT
CCAACAAATAAGAGCAATGTATAAAATGATACCATACTCACCAGTCGGAG
TTTTGCAACCCGGTGTAAATGGATTAGTGACAAAAAGACGCTTCGAACAT
CTTAGAGAGCTCTGCAGTGAGCTAATGGAGAGAAGGTGGAAATTGTTTAG
CAAACAACCGACTTCTAATGGTCATCGATCTACCAACTCTCCGGGATCCA
TGTATGATTGCTCTTTGCTCAGAGATGATATACATAGAGACGCTCTAGGC
ACTGAGGAAGAATCATCACGCCTTTATAGCACAGAGTTTTCGCGGCTGCG
GAAGCAAGTCTTGGTTCGCCTAGTAGAGAAACTTGCTTCATCTAAACTGA
ACATGCTTCTCTTTGCGTTTGACGAAAAAATTGCGGACCTCGAACCTCGT
AACCCGAACTCACAAACCAATCGTCGTTTGGCAACTACAAAGGAGTACTG
GATAAGGGTTATGAATCAAGACCATATCCCGCATCATTTTGCGAGAGAGT
TGAAGGCATTGGAAGCTGAGGAAAAACGACTATTGGCAGGATTTGACTCC
GAGGCGTTGTGGGGCGTCCGACCACGAAAGGAACTTCCATGCAAAAGATA
TCATGGACATCAAAGCGAAAAGACAGATATAAAAGAAGCCCGATTCTATG
GTGCGGATAATCAAGTGGTTCTATCTGGGTCCGACGACGGTTTTGTTTAT
ATGTGGGCTGCGGGAACCTGCGAACTGCTAACCCGAGTTTCCGCCGACGA
TCAAATTGTCAACTGTGTTCTGCCGCACCCCTACCGATCGATGATACTTG
TGTCTGGAATAGATAATACGATCAAGGTGTTAACTCCCGATTTATCAAGT
AGCGAGGAATGA
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protein sequence of Ggra9235.t2

>Ggra9235.t2 ID=Ggra9235.t2|Name=Ggra9235.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MHPAYVTFATFSSDASQIVASYYMDAVHVFNRRQQSQSGPYYPSFKFNSE
RKRVVWLLIQEAAERLLNGSVGCAKTAIAKANSVLELEPQNILALLYKAE
SLLLRENYSDFREAFETLQLLINLIREQPRLITALWGSDGPMCPPCFPES
IGNWERKAQIWLMIFEFQQIRAMYKMIPYSPVGVLQPGVNGLVTKRRFEH
LRELCSELMERRWKLFSKQPTSNGHRSTNSPGSMYDCSLLRDDIHRDALG
TEEESSRLYSTEFSRLRKQVLVRLVEKLASSKLNMLLFAFDEKIADLEPR
NPNSQTNRRLATTKEYWIRVMNQDHIPHHFARELKALEAEEKRLLAGFDS
EALWGVRPRKELPCKRYHGHQSEKTDIKEARFYGADNQVVLSGSDDGFVY
MWAAGTCELLTRVSADDQIVNCVLPHPYRSMILVSGIDNTIKVLTPDLSS
SEE*
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mRNA from alignment at tig00000075_pilon:456845..458206+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9235.t2 ID=Ggra9235.t2|Name=Ggra9235.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000075_pilon:456845..458206+ (Gracilaria gracilis GNS1m male)
ATGCATCCAGCTTACGTTACATTCGCCACCTTTTCATCAGATGCAAGCCA
GATTGTGGCATCGTACTATATGGATGCGGTTCATGTTTTCAATCGCCGTC
AACAATCACAGTCTGGGCCTTACTATCCAAGCTTCAAGTTCAACTCCGAA
AGGAAACGTGTAGTGTGGTTGTTGATTCAAGAGGCTGCTGAAAGGCTCTT
AAACGGTTCTGTGGGTTGCGCGAAAACTGCAATAGCGAAAGCCAACAGCG
TTCTCGAATTGGAACCCCAAAATATTCTTGCGTTACTCTATAAAGCCGAG
AGTTTGCTTTTGCGTGAAAACTATAGTGACTTTCGAGAAGCGTTTGAAAC
CCTTCAACTCTTAATCAACCTTATTAGGGAACAGCCTCGGCTTATAACTG
CTCTATGGGGATCCGATGGTCCAATGTGTCCACCATGCTTTCCAGAATCC
ATAGGTAACTGGGAACGAAAGGCGCAGATATGGTTGATGATCTTCGAGTT
CCAACAAATAAGAGCAATGTATAAAATGATACCATACTCACCAGTCGGAG
TTTTGCAACCCGGTGTAAATGGATTAGTGACAAAAAGACGCTTCGAACAT
CTTAGAGAGCTCTGCAGTGAGCTAATGGAGAGAAGGTGGAAATTGTTTAG
CAAACAACCGACTTCTAATGGTCATCGATCTACCAACTCTCCGGGATCCA
TGTATGATTGCTCTTTGCTCAGAGATGATATACATAGAGACGCTCTAGGC
ACTGAGGAAGAATCATCACGCCTTTATAGCACAGAGTTTTCGCGGCTGCG
GAAGCAAGTCTTGGTTCGCCTAGTAGAGAAACTTGCTTCATCTAAACTGA
ACATGCTTCTCTTTGCGTTTGACGAAAAAATTGCGGACCTCGAACCTCGT
AACCCGAACTCACAAACCAATCGTCGTTTGGCAACTACAAAGGAGTACTG
GATAAGGGTTATGAATCAAGACCATATCCCGCATCATTTTGCGAGAGAGT
TGAAGGCATTGGAAGCTGAGGAAAAACGACTATTGGCAGGATTTGACTCC
GAGGCGTTGTGGGGCGTCCGACCACGAAAGGAACTTCCATGCAAAAGATA
TCATGGACATCAAAGCGAAAAGACAGATATAAAAGAAGCCCGATTCTATG
GTGCGGATAATCAAGTGGTTCTATCTGGGTCCGACGACGGTTTTGTTTAT
ATGTGGGCTGCGGGAACCTGCGAACTGCTAACCCGAGTTTCCGCCGACGA
TCAAATTGTCAACTGTGTTCTGCCGCACCCCTACCGATCGATGATACTTG
TGTCTGGAATAGATAATACGATCAAGGTGTTAACTCCCGATTTATCAAGT
AGCGAGGAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:456845..458206+

>Ggra9235.t2 ID=Ggra9235.t2|Name=Ggra9235.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000075_pilon:456845..458206+ (Gracilaria gracilis GNS1m male)
ATGCATCCAGCTTACGTTACATTCGCCACCTTTTCATCAGATGCAAGCCA
GATTGTGGCATCGTACTATATGGATGCGGTTCATGTTTTCAATCGCCGTC
AACAATCACAGTCTGGGCCTTACTATCCAAGCTTCAAGTTCAACTCCGAA
AGGAAACGTGTAGTGTGGTTGTTGATTCAAGAGGCTGCTGAAAGGCTCTT
AAACGGTTCTGTGGGTTGCGCGAAAACTGCAATAGCGAAAGCCAACAGCG
TTCTCGAATTGGAACCCCAAAATATTCTTGCGTTACTCTATAAAGCCGAG
AGTTTGCTTTTGCGTGAAAACTATAGTGACTTTCGAGAAGCGTTTGAAAC
CCTTCAACTCTTAATCAACCTTATTAGGGAACAGCCTCGGCTTATAACTG
CTCTATGGGGATCCGATGGTCCAATGTGTCCACCATGCTTTCCAGAATCC
ATAGGTAACTGGGAACGAAAGGCGCAGATATGGTTGATGATCTTCGAGTT
CCAACAAATAAGAGCAATGTATAAAATGATACCATACTCACCAGTCGGAG
TTTTGCAACCCGGTGTAAATGGATTAGTGACAAAAAGACGCTTCGAACAT
CTTAGAGAGCTCTGCAGTGAGCTAATGGAGAGAAGGTGGAAATTGTTTAG
CAAACAACCGACTTCTAATGGTCATCGATCTACCAACTCTCCGGGATCCA
TGTATGATTGCTCTTTGCTCAGAGATGATATACATAGAGACGCTCTAGGC
ACTGAGGAAGAATCATCACGCCTTTATAGCACAGAGTTTTCGCGGCTGCG
GAAGCAAGTCTTGGTTCGCCTAGTAGAGAAACTTGCTTCATCTAAACTGA
ACATGCTTCTCTTTGCGTTTGACGAAAAAATTGCGGACCTCGAACCTCGT
AACCCGAACTCACAAACCAATCGTCGTTTGGCAACTACAAAGGAGTACTG
GATAAGGGTTATGAATCAAGACCATATCCCGCATCATTTTGCGAGAGAGT
TGAAGGCATTGGAAGCTGAGGAAAAACGACTATTGGCAGGATTTGACTCC
GAGGCGTTGTGGGGCGTCCGACCACGAAAGGAACTTCCATGCAAAAGATA
TCATGGACATCAAAGCGAAAAGACAGATATAAAAGAAGCCCGATTCTATG
GTGCGGATAATCAAGTGGTTCTATCTGGGTCCGACGACGGTTTTGTTTAT
ATGTGGGCTGCGGGAACCTGCGAACTGCTAACCCGAGTTTCCGCCGACGA
TCAAATTGTCAACTGTGTTCTGCCGCACCCCTACCGATCGATGATACTTG
TGTCTGGAATAGATAATACGATCAAGGTGTTAACTCCCGATTTATCAAGT
AGCGAGGAATGA
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