Ggra9229.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9229.t1
Unique NameGgra9229.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:430415..431785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD08301
Preferred nameDCAF7
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K11805
GOsGO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
Evalue1.24e-125
EggNOG OGsKOG0290@1|root,KOG0290@2759|Eukaryota
Descriptionepidermal cell fate specification
COG categoryM
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9229Ggra9229Gracilaria gracilis GNS1m malegenetig00000075_pilon 430415..431785 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9229.t1.start1Ggra9229.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 430415..430417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9229.t1.CDS1Ggra9229.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 430415..431785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9229.t1.exon1Ggra9229.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 430415..431785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9229.t1.stop1Ggra9229.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 431783..431785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9229.t1Ggra9229.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 430415..431785 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9229.t1 ID=Ggra9229.t1|Name=Ggra9229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MHCRFAGCTVTDTLTSTDTLTFSGGIASAALCHSPAFPLASSAPDAQALR
VRFHPGVWETTACFPTSPSSLVLPNHPNERTWLHIASTERALLAIVSSCR
TTHALLSAVPSNRAQPTYAALGEIMSSTTSVAEALEYDAKSVLYSLGWSY
RNDQPPRLAVGTFIEEYNNTVQILQQNSDSLDFLSSFDHPYPTTKVAWIP
DVNATHPDLIATSGDFLRLWQVHPEGSPRMKCQLNSNRQSEFCAPLTAFD
WNQENPALLGTSSIDTTCTVWDVETQQAKTQLIAHDSEVYDFAFAARGVD
VFASVGADGSVRLFDLRALEHSTIIYESRDMTPLLRLRWNTRNPNYLATI
PLDSPNVIVVDIRHPSLPLATLDHRSSTSDNCVNAISWAPHTAVQLASGG
DGCLALIWNISNTPKRIEDPAFSYGAGDAINNLQWAPTDSEWVAITVRDT
VRVLRV*
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spliced messenger RNA

>Ggra9229.t1 ID=Ggra9229.t1|Name=Ggra9229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000075_pilon:430415..431785+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGCAGATTTGCAGGATGCACGGTGACCGACACGCTCACGTCGAC
CGACACGCTCACGTTTTCGGGCGGAATCGCGTCAGCTGCTCTTTGCCATT
CCCCCGCCTTTCCCTTGGCTTCTTCCGCTCCCGACGCCCAAGCCCTCCGT
GTGCGTTTCCATCCCGGCGTATGGGAAACCACAGCTTGTTTTCCCACATC
GCCGTCCTCACTCGTCCTCCCCAACCACCCCAACGAGCGCACCTGGTTGC
ATATCGCCTCCACGGAGCGCGCACTGCTTGCGATCGTTTCTTCATGCCGC
ACTACGCACGCTCTGTTGTCAGCTGTACCCTCTAATCGCGCCCAACCAAC
ATACGCAGCTCTTGGAGAGATTATGAGCTCCACAACCAGTGTGGCAGAAG
CACTCGAGTACGACGCCAAATCTGTCCTGTACAGCCTGGGTTGGAGCTAT
CGCAATGACCAACCGCCACGGTTAGCCGTCGGAACCTTTATTGAGGAGTA
CAATAACACCGTTCAGATACTGCAACAAAATTCAGATTCCCTCGATTTCT
TATCTTCGTTTGACCATCCTTATCCCACCACCAAGGTTGCATGGATACCA
GATGTCAATGCAACACACCCTGATCTCATCGCCACTTCAGGCGACTTTTT
GCGGCTATGGCAAGTACATCCTGAGGGTTCCCCGAGAATGAAATGCCAGC
TCAATAGTAACCGACAGAGCGAGTTCTGCGCTCCACTCACTGCCTTCGAT
TGGAATCAAGAAAATCCGGCTCTGCTTGGAACCTCTTCCATAGATACTAC
CTGCACTGTCTGGGATGTTGAGACACAACAAGCCAAAACACAACTAATTG
CGCACGATAGCGAAGTGTACGACTTTGCATTTGCTGCTCGTGGCGTAGAT
GTTTTTGCCTCTGTGGGTGCGGACGGATCAGTGCGCCTCTTCGATCTTCG
TGCTCTGGAGCACTCCACAATTATCTACGAATCACGTGATATGACCCCCC
TTCTTCGTCTTCGATGGAACACAAGAAACCCAAACTATCTCGCCACAATC
CCATTGGATTCCCCGAACGTCATTGTAGTTGACATTCGTCACCCGTCGTT
GCCCCTGGCAACCTTGGATCATCGGAGCTCCACATCGGACAATTGCGTCA
ACGCAATTTCCTGGGCTCCGCATACCGCTGTTCAACTTGCATCTGGCGGA
GATGGTTGTCTTGCTCTGATATGGAACATATCCAACACCCCGAAACGCAT
TGAGGACCCTGCTTTTTCGTACGGCGCAGGTGACGCCATCAACAATCTGC
AATGGGCACCTACGGATTCTGAATGGGTAGCAATCACAGTAAGAGATACT
GTGAGAGTACTTCGAGTCTAA
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protein sequence of Ggra9229.t1

>Ggra9229.t1 ID=Ggra9229.t1|Name=Ggra9229.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MHCRFAGCTVTDTLTSTDTLTFSGGIASAALCHSPAFPLASSAPDAQALR
VRFHPGVWETTACFPTSPSSLVLPNHPNERTWLHIASTERALLAIVSSCR
TTHALLSAVPSNRAQPTYAALGEIMSSTTSVAEALEYDAKSVLYSLGWSY
RNDQPPRLAVGTFIEEYNNTVQILQQNSDSLDFLSSFDHPYPTTKVAWIP
DVNATHPDLIATSGDFLRLWQVHPEGSPRMKCQLNSNRQSEFCAPLTAFD
WNQENPALLGTSSIDTTCTVWDVETQQAKTQLIAHDSEVYDFAFAARGVD
VFASVGADGSVRLFDLRALEHSTIIYESRDMTPLLRLRWNTRNPNYLATI
PLDSPNVIVVDIRHPSLPLATLDHRSSTSDNCVNAISWAPHTAVQLASGG
DGCLALIWNISNTPKRIEDPAFSYGAGDAINNLQWAPTDSEWVAITVRDT
VRVLRV*
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mRNA from alignment at tig00000075_pilon:430415..431785+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9229.t1 ID=Ggra9229.t1|Name=Ggra9229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000075_pilon:430415..431785+ (Gracilaria gracilis GNS1m male)
ATGCATTGCAGATTTGCAGGATGCACGGTGACCGACACGCTCACGTCGAC
CGACACGCTCACGTTTTCGGGCGGAATCGCGTCAGCTGCTCTTTGCCATT
CCCCCGCCTTTCCCTTGGCTTCTTCCGCTCCCGACGCCCAAGCCCTCCGT
GTGCGTTTCCATCCCGGCGTATGGGAAACCACAGCTTGTTTTCCCACATC
GCCGTCCTCACTCGTCCTCCCCAACCACCCCAACGAGCGCACCTGGTTGC
ATATCGCCTCCACGGAGCGCGCACTGCTTGCGATCGTTTCTTCATGCCGC
ACTACGCACGCTCTGTTGTCAGCTGTACCCTCTAATCGCGCCCAACCAAC
ATACGCAGCTCTTGGAGAGATTATGAGCTCCACAACCAGTGTGGCAGAAG
CACTCGAGTACGACGCCAAATCTGTCCTGTACAGCCTGGGTTGGAGCTAT
CGCAATGACCAACCGCCACGGTTAGCCGTCGGAACCTTTATTGAGGAGTA
CAATAACACCGTTCAGATACTGCAACAAAATTCAGATTCCCTCGATTTCT
TATCTTCGTTTGACCATCCTTATCCCACCACCAAGGTTGCATGGATACCA
GATGTCAATGCAACACACCCTGATCTCATCGCCACTTCAGGCGACTTTTT
GCGGCTATGGCAAGTACATCCTGAGGGTTCCCCGAGAATGAAATGCCAGC
TCAATAGTAACCGACAGAGCGAGTTCTGCGCTCCACTCACTGCCTTCGAT
TGGAATCAAGAAAATCCGGCTCTGCTTGGAACCTCTTCCATAGATACTAC
CTGCACTGTCTGGGATGTTGAGACACAACAAGCCAAAACACAACTAATTG
CGCACGATAGCGAAGTGTACGACTTTGCATTTGCTGCTCGTGGCGTAGAT
GTTTTTGCCTCTGTGGGTGCGGACGGATCAGTGCGCCTCTTCGATCTTCG
TGCTCTGGAGCACTCCACAATTATCTACGAATCACGTGATATGACCCCCC
TTCTTCGTCTTCGATGGAACACAAGAAACCCAAACTATCTCGCCACAATC
CCATTGGATTCCCCGAACGTCATTGTAGTTGACATTCGTCACCCGTCGTT
GCCCCTGGCAACCTTGGATCATCGGAGCTCCACATCGGACAATTGCGTCA
ACGCAATTTCCTGGGCTCCGCATACCGCTGTTCAACTTGCATCTGGCGGA
GATGGTTGTCTTGCTCTGATATGGAACATATCCAACACCCCGAAACGCAT
TGAGGACCCTGCTTTTTCGTACGGCGCAGGTGACGCCATCAACAATCTGC
AATGGGCACCTACGGATTCTGAATGGGTAGCAATCACAGTAAGAGATACT
GTGAGAGTACTTCGAGTCTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:430415..431785+

>Ggra9229.t1 ID=Ggra9229.t1|Name=Ggra9229.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000075_pilon:430415..431785+ (Gracilaria gracilis GNS1m male)
ATGCATTGCAGATTTGCAGGATGCACGGTGACCGACACGCTCACGTCGAC
CGACACGCTCACGTTTTCGGGCGGAATCGCGTCAGCTGCTCTTTGCCATT
CCCCCGCCTTTCCCTTGGCTTCTTCCGCTCCCGACGCCCAAGCCCTCCGT
GTGCGTTTCCATCCCGGCGTATGGGAAACCACAGCTTGTTTTCCCACATC
GCCGTCCTCACTCGTCCTCCCCAACCACCCCAACGAGCGCACCTGGTTGC
ATATCGCCTCCACGGAGCGCGCACTGCTTGCGATCGTTTCTTCATGCCGC
ACTACGCACGCTCTGTTGTCAGCTGTACCCTCTAATCGCGCCCAACCAAC
ATACGCAGCTCTTGGAGAGATTATGAGCTCCACAACCAGTGTGGCAGAAG
CACTCGAGTACGACGCCAAATCTGTCCTGTACAGCCTGGGTTGGAGCTAT
CGCAATGACCAACCGCCACGGTTAGCCGTCGGAACCTTTATTGAGGAGTA
CAATAACACCGTTCAGATACTGCAACAAAATTCAGATTCCCTCGATTTCT
TATCTTCGTTTGACCATCCTTATCCCACCACCAAGGTTGCATGGATACCA
GATGTCAATGCAACACACCCTGATCTCATCGCCACTTCAGGCGACTTTTT
GCGGCTATGGCAAGTACATCCTGAGGGTTCCCCGAGAATGAAATGCCAGC
TCAATAGTAACCGACAGAGCGAGTTCTGCGCTCCACTCACTGCCTTCGAT
TGGAATCAAGAAAATCCGGCTCTGCTTGGAACCTCTTCCATAGATACTAC
CTGCACTGTCTGGGATGTTGAGACACAACAAGCCAAAACACAACTAATTG
CGCACGATAGCGAAGTGTACGACTTTGCATTTGCTGCTCGTGGCGTAGAT
GTTTTTGCCTCTGTGGGTGCGGACGGATCAGTGCGCCTCTTCGATCTTCG
TGCTCTGGAGCACTCCACAATTATCTACGAATCACGTGATATGACCCCCC
TTCTTCGTCTTCGATGGAACACAAGAAACCCAAACTATCTCGCCACAATC
CCATTGGATTCCCCGAACGTCATTGTAGTTGACATTCGTCACCCGTCGTT
GCCCCTGGCAACCTTGGATCATCGGAGCTCCACATCGGACAATTGCGTCA
ACGCAATTTCCTGGGCTCCGCATACCGCTGTTCAACTTGCATCTGGCGGA
GATGGTTGTCTTGCTCTGATATGGAACATATCCAACACCCCGAAACGCAT
TGAGGACCCTGCTTTTTCGTACGGCGCAGGTGACGCCATCAACAATCTGC
AATGGGCACCTACGGATTCTGAATGGGTAGCAATCACAGTAAGAGATACT
GTGAGAGTACTTCGAGTCTAA
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