Ggra9261.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9261.t1
Unique Name	Ggra9261.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:616117..617256 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010255380.1
Preferred name	SPPL1
PFAMs	Peptidase_A22B
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09598
GOs	GO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0030660,GO:0031090,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071458,GO:0071556,GO:0097708,GO:0098552,GO:0098553,GO:0098554,GO:0098562,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852
Evalue	2.78e-49
EggNOG OGs	KOG2443@1\|root,KOG2443@2759\|Eukaryota,37R1T@33090\|Viridiplantae,3GB07@35493\|Streptophyta
Description	signal peptide peptidase-like
COG category	S
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9261	Ggra9261	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 616117..617256 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9261.t1.start1	Ggra9261.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 616117..616119 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9261.t1.CDS1	Ggra9261.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 616117..617256 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9261.t1.exon1	Ggra9261.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 616117..617256 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9261.t1.stop1	Ggra9261.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 617254..617256 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9261.t1	Ggra9261.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 616117..617256 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:616117..617256+
coding sequence from alignment at tig00000075_pilon:616117..617256+

mRNA sequence

>Ggra9261.t1 ID=Ggra9261.t1|Name=Ggra9261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MASELLLLLTDSTTLCMVITATLTAAYSSYRANESLFKRGSSRAQPLNAS
LSEQFIDENRRMLEGSTAVAFPIIAAVSIVFLFFFIKSFGYILTLLSTVS
SVFSVGFFLWPFAEVIAARIRALSVQMRSNNYIESLIVVPIALAVIVVWL
FTGGWVPNNVIGVSLCVLFASLCKVPNLKVTVMLFAGLFVYDIFFVFFSE
RFFGRNVMVEVATSAPKNPVSAIASFFNLPFTPVKNLALPAKLIFPAGGN
DIAILGLGDIILPEILLTYLLEIDLLRSAQRAPWYNGYFTRALVAYLLAL
YTSFYCNFVFQNAQPALLYIVPALLLTTLVYARSKGDVDALWTGTAIRYP
QGEIGADMTLEPNARVTDPKDLETTALVT*

spliced messenger RNA

>Ggra9261.t1 ID=Ggra9261.t1|Name=Ggra9261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000075_pilon:616117..617256+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCGAGCTGCTCCTCCTCCTCACAGACAGCACGACGCTATGCAT
GGTAATCACCGCCACTCTCACTGCTGCTTATTCTTCGTACCGGGCCAATG
AGTCTCTCTTCAAGAGGGGTTCGTCGCGAGCGCAGCCGTTGAATGCCTCG
CTTTCCGAGCAGTTTATCGATGAGAACAGACGCATGCTGGAGGGTTCTAC
AGCTGTTGCGTTTCCTATCATCGCCGCTGTGTCTATCGTGTTCCTGTTCT
TTTTCATCAAGTCCTTTGGGTACATTCTTACTCTGCTTTCAACTGTTTCC
AGCGTTTTCTCAGTCGGTTTCTTCTTGTGGCCCTTTGCGGAGGTGATTGC
TGCACGGATTCGCGCTCTGTCCGTACAGATGCGATCAAACAACTACATCG
AATCTCTCATTGTTGTGCCCATTGCACTAGCCGTCATTGTTGTGTGGCTG
TTCACTGGCGGCTGGGTACCAAACAATGTCATTGGCGTCAGTTTGTGTGT
TTTGTTCGCCTCTTTGTGCAAAGTTCCAAACCTCAAAGTCACTGTCATGC
TCTTCGCGGGTCTGTTCGTATACGACATTTTCTTTGTTTTCTTTTCCGAA
AGATTCTTCGGTCGAAACGTTATGGTGGAGGTTGCCACCTCTGCCCCTAA
GAACCCGGTTTCAGCAATTGCATCCTTCTTCAACTTGCCGTTTACCCCTG
TGAAGAATTTGGCCTTACCAGCCAAGCTTATTTTTCCGGCCGGAGGGAAT
GATATTGCTATTTTGGGACTTGGAGATATCATACTCCCGGAGATTCTTCT
CACGTACCTTCTGGAAATTGATCTGTTGCGAAGTGCTCAAAGAGCCCCAT
GGTACAATGGTTACTTCACGAGGGCGCTCGTAGCGTACTTGTTGGCTTTG
TATACCAGCTTTTACTGCAATTTTGTATTTCAGAACGCACAGCCTGCTCT
ATTGTATATAGTTCCCGCTCTTCTGTTGACTACTTTGGTGTACGCACGAA
GCAAAGGAGATGTTGATGCATTATGGACAGGCACAGCAATTAGATACCCC
CAAGGGGAAATTGGAGCCGACATGACTCTCGAACCTAACGCTAGAGTAAC
AGACCCAAAAGATCTTGAGACAACCGCACTTGTAACGTGA

protein sequence of Ggra9261.t1

>Ggra9261.t1 ID=Ggra9261.t1|Name=Ggra9261.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MASELLLLLTDSTTLCMVITATLTAAYSSYRANESLFKRGSSRAQPLNAS
LSEQFIDENRRMLEGSTAVAFPIIAAVSIVFLFFFIKSFGYILTLLSTVS
SVFSVGFFLWPFAEVIAARIRALSVQMRSNNYIESLIVVPIALAVIVVWL
FTGGWVPNNVIGVSLCVLFASLCKVPNLKVTVMLFAGLFVYDIFFVFFSE
RFFGRNVMVEVATSAPKNPVSAIASFFNLPFTPVKNLALPAKLIFPAGGN
DIAILGLGDIILPEILLTYLLEIDLLRSAQRAPWYNGYFTRALVAYLLAL
YTSFYCNFVFQNAQPALLYIVPALLLTTLVYARSKGDVDALWTGTAIRYP
QGEIGADMTLEPNARVTDPKDLETTALVT*

mRNA from alignment at tig00000075_pilon:616117..617256+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9261.t1 ID=Ggra9261.t1|Name=Ggra9261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000075_pilon:616117..617256+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCGAGCTGCTCCTCCTCCTCACAGACAGCACGACGCTATGCAT
GGTAATCACCGCCACTCTCACTGCTGCTTATTCTTCGTACCGGGCCAATG
AGTCTCTCTTCAAGAGGGGTTCGTCGCGAGCGCAGCCGTTGAATGCCTCG
CTTTCCGAGCAGTTTATCGATGAGAACAGACGCATGCTGGAGGGTTCTAC
AGCTGTTGCGTTTCCTATCATCGCCGCTGTGTCTATCGTGTTCCTGTTCT
TTTTCATCAAGTCCTTTGGGTACATTCTTACTCTGCTTTCAACTGTTTCC
AGCGTTTTCTCAGTCGGTTTCTTCTTGTGGCCCTTTGCGGAGGTGATTGC
TGCACGGATTCGCGCTCTGTCCGTACAGATGCGATCAAACAACTACATCG
AATCTCTCATTGTTGTGCCCATTGCACTAGCCGTCATTGTTGTGTGGCTG
TTCACTGGCGGCTGGGTACCAAACAATGTCATTGGCGTCAGTTTGTGTGT
TTTGTTCGCCTCTTTGTGCAAAGTTCCAAACCTCAAAGTCACTGTCATGC
TCTTCGCGGGTCTGTTCGTATACGACATTTTCTTTGTTTTCTTTTCCGAA
AGATTCTTCGGTCGAAACGTTATGGTGGAGGTTGCCACCTCTGCCCCTAA
GAACCCGGTTTCAGCAATTGCATCCTTCTTCAACTTGCCGTTTACCCCTG
TGAAGAATTTGGCCTTACCAGCCAAGCTTATTTTTCCGGCCGGAGGGAAT
GATATTGCTATTTTGGGACTTGGAGATATCATACTCCCGGAGATTCTTCT
CACGTACCTTCTGGAAATTGATCTGTTGCGAAGTGCTCAAAGAGCCCCAT
GGTACAATGGTTACTTCACGAGGGCGCTCGTAGCGTACTTGTTGGCTTTG
TATACCAGCTTTTACTGCAATTTTGTATTTCAGAACGCACAGCCTGCTCT
ATTGTATATAGTTCCCGCTCTTCTGTTGACTACTTTGGTGTACGCACGAA
GCAAAGGAGATGTTGATGCATTATGGACAGGCACAGCAATTAGATACCCC
CAAGGGGAAATTGGAGCCGACATGACTCTCGAACCTAACGCTAGAGTAAC
AGACCCAAAAGATCTTGAGACAACCGCACTTGTAACGTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:616117..617256+

>Ggra9261.t1 ID=Ggra9261.t1|Name=Ggra9261.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000075_pilon:616117..617256+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCGAGCTGCTCCTCCTCCTCACAGACAGCACGACGCTATGCAT
GGTAATCACCGCCACTCTCACTGCTGCTTATTCTTCGTACCGGGCCAATG
AGTCTCTCTTCAAGAGGGGTTCGTCGCGAGCGCAGCCGTTGAATGCCTCG
CTTTCCGAGCAGTTTATCGATGAGAACAGACGCATGCTGGAGGGTTCTAC
AGCTGTTGCGTTTCCTATCATCGCCGCTGTGTCTATCGTGTTCCTGTTCT
TTTTCATCAAGTCCTTTGGGTACATTCTTACTCTGCTTTCAACTGTTTCC
AGCGTTTTCTCAGTCGGTTTCTTCTTGTGGCCCTTTGCGGAGGTGATTGC
TGCACGGATTCGCGCTCTGTCCGTACAGATGCGATCAAACAACTACATCG
AATCTCTCATTGTTGTGCCCATTGCACTAGCCGTCATTGTTGTGTGGCTG
TTCACTGGCGGCTGGGTACCAAACAATGTCATTGGCGTCAGTTTGTGTGT
TTTGTTCGCCTCTTTGTGCAAAGTTCCAAACCTCAAAGTCACTGTCATGC
TCTTCGCGGGTCTGTTCGTATACGACATTTTCTTTGTTTTCTTTTCCGAA
AGATTCTTCGGTCGAAACGTTATGGTGGAGGTTGCCACCTCTGCCCCTAA
GAACCCGGTTTCAGCAATTGCATCCTTCTTCAACTTGCCGTTTACCCCTG
TGAAGAATTTGGCCTTACCAGCCAAGCTTATTTTTCCGGCCGGAGGGAAT
GATATTGCTATTTTGGGACTTGGAGATATCATACTCCCGGAGATTCTTCT
CACGTACCTTCTGGAAATTGATCTGTTGCGAAGTGCTCAAAGAGCCCCAT
GGTACAATGGTTACTTCACGAGGGCGCTCGTAGCGTACTTGTTGGCTTTG
TATACCAGCTTTTACTGCAATTTTGTATTTCAGAACGCACAGCCTGCTCT
ATTGTATATAGTTCCCGCTCTTCTGTTGACTACTTTGGTGTACGCACGAA
GCAAAGGAGATGTTGATGCATTATGGACAGGCACAGCAATTAGATACCCC
CAAGGGGAAATTGGAGCCGACATGACTCTCGAACCTAACGCTAGAGTAAC
AGACCCAAAAGATCTTGAGACAACCGCACTTGTAACGTGA