Ggra9232.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9232.t1
Unique NameGgra9232.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length469
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:437820..439226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4565.Traes_5DL_2A1A062CD.1
PFAMsRubis-subs-bind,SET
Max annot lvl35493|Streptophyta
KEGG rclassRC01974
KEGG koko:K00592
KEGG ReactionR05179
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018026,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue1.29e-49
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,37I7T@33090|Viridiplantae,3G7DF@35493|Streptophyta,3KMSE@4447|Liliopsida,3I41X@38820|Poales
EC2.1.1.127,2.1.1.259
DescriptionRubisco LSMT substrate-binding
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9232Ggra9232Gracilaria gracilis GNS1m malegenetig00000075_pilon 437820..439226 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9232.t1.stop1Ggra9232.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 437820..437822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9232.t1.CDS1Ggra9232.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 437820..439226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9232.t1.exon1Ggra9232.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 437820..439226 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9232.t1.start1Ggra9232.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 439224..439226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9232.t1Ggra9232.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 437820..439226 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9232.t1 ID=Ggra9232.t1|Name=Ggra9232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=469bp
MSAVKSRELDECITWLDTNSGRVNKVLNFSRIETRSKRGVLVSAGKKLLE
RTELAIVPEGSYIGLKEAKKLLDEAYPAFSSSGVVTESGDYVALALLLER
SKGSKSVFAPFLKTLPEQEDLDCIPLWSTEEHEMLRGSTVYTDLKEWLEN
TEEEWEALDKGIFQKSRDMFPEDCFSLRDYRWALCISSSRSFYVSQSEPS
VLAPILTLLNPPQPESTPSVSAEFSGGMFFAKKKLILTAKKDIEDGDAAT
VSYGKSLRNAELAFTKGLTMNDMRCNSVSLSFELSSLDRLFEDKQDILES
YDVETNPKFEIVGGSQVGEYEAPEDMDSFLRLLCLTGVDSFLLEGVFRGE
VWDFMGLPVSAENERSVCELVINACADMLEEYSDAFDNFEEGDLTERQRM
ARCIVEGEKQILGNLRKTYQRRLGNLDGLEYYAERRLKMLDLLRPIDESE
IVDSESGGRVARAFDENY*
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spliced messenger RNA

>Ggra9232.t1 ID=Ggra9232.t1|Name=Ggra9232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000075_pilon:437820..439226- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGGTCAAGTCGAGGGAACTGGACGAATGTATTACATGGCTTGA
CACTAATTCGGGGAGGGTCAATAAAGTGCTAAATTTCTCACGCATAGAAA
CACGCTCAAAACGGGGAGTGCTGGTCTCAGCTGGGAAGAAACTATTGGAG
AGAACCGAACTGGCTATTGTTCCCGAAGGATCATACATAGGCTTGAAAGA
AGCAAAGAAGCTTCTTGACGAAGCGTATCCTGCGTTTTCGTCCTCCGGAG
TAGTCACAGAGAGTGGCGATTATGTAGCACTAGCTCTACTATTAGAGCGG
AGCAAAGGTTCGAAATCAGTCTTTGCACCGTTTCTGAAGACTCTGCCTGA
ACAGGAAGATCTGGACTGCATACCTTTATGGAGCACCGAAGAACATGAAA
TGTTGCGCGGCTCGACGGTTTACACAGATTTGAAGGAATGGCTTGAGAAC
ACGGAAGAAGAATGGGAAGCCCTTGACAAAGGCATTTTTCAGAAGAGTAG
AGATATGTTTCCTGAAGATTGTTTCTCATTGCGCGACTATCGTTGGGCTC
TGTGTATATCTTCTTCTCGAAGTTTTTATGTCAGTCAGTCTGAACCTTCG
GTACTTGCTCCAATTCTTACCCTATTGAACCCGCCACAACCGGAATCGAC
ACCTTCTGTTTCGGCTGAGTTTAGCGGAGGAATGTTTTTCGCAAAGAAGA
AGCTCATCTTGACCGCTAAAAAGGACATTGAAGACGGCGATGCGGCCACC
GTCAGCTACGGAAAAAGTCTACGAAACGCTGAACTTGCGTTTACAAAGGG
GTTGACAATGAACGATATGCGTTGTAATTCTGTCTCCTTATCCTTTGAGT
TGTCATCTCTTGACCGGCTTTTCGAGGATAAACAAGATATATTGGAATCC
TATGATGTTGAAACTAACCCGAAGTTTGAGATTGTTGGCGGAAGCCAAGT
TGGTGAATATGAGGCGCCGGAAGATATGGACTCGTTTCTTCGTTTACTCT
GCCTGACAGGGGTTGACTCTTTTCTCTTAGAAGGGGTATTTCGAGGAGAA
GTATGGGACTTCATGGGGCTTCCAGTTAGTGCCGAAAATGAGAGGTCTGT
GTGTGAATTGGTAATCAATGCTTGCGCGGATATGCTTGAGGAGTATTCAG
ACGCTTTTGACAATTTTGAAGAAGGCGATCTGACAGAAAGACAAAGAATG
GCCAGATGTATTGTGGAAGGAGAGAAGCAAATTCTGGGGAACTTGCGGAA
AACCTATCAGAGAAGATTGGGAAATCTCGATGGTTTAGAATACTATGCGG
AACGGCGTCTGAAAATGCTAGACTTGCTTCGACCCATTGACGAAAGTGAG
ATAGTTGATTCCGAGAGTGGTGGCCGAGTAGCTCGCGCCTTTGATGAGAA
CTACTGA
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protein sequence of Ggra9232.t1

>Ggra9232.t1 ID=Ggra9232.t1|Name=Ggra9232.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=469bp
MSAVKSRELDECITWLDTNSGRVNKVLNFSRIETRSKRGVLVSAGKKLLE
RTELAIVPEGSYIGLKEAKKLLDEAYPAFSSSGVVTESGDYVALALLLER
SKGSKSVFAPFLKTLPEQEDLDCIPLWSTEEHEMLRGSTVYTDLKEWLEN
TEEEWEALDKGIFQKSRDMFPEDCFSLRDYRWALCISSSRSFYVSQSEPS
VLAPILTLLNPPQPESTPSVSAEFSGGMFFAKKKLILTAKKDIEDGDAAT
VSYGKSLRNAELAFTKGLTMNDMRCNSVSLSFELSSLDRLFEDKQDILES
YDVETNPKFEIVGGSQVGEYEAPEDMDSFLRLLCLTGVDSFLLEGVFRGE
VWDFMGLPVSAENERSVCELVINACADMLEEYSDAFDNFEEGDLTERQRM
ARCIVEGEKQILGNLRKTYQRRLGNLDGLEYYAERRLKMLDLLRPIDESE
IVDSESGGRVARAFDENY*
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mRNA from alignment at tig00000075_pilon:437820..439226-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9232.t1 ID=Ggra9232.t1|Name=Ggra9232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000075_pilon:437820..439226- (Gracilaria gracilis GNS1m male)
ATGAGCGCGGTCAAGTCGAGGGAACTGGACGAATGTATTACATGGCTTGA
CACTAATTCGGGGAGGGTCAATAAAGTGCTAAATTTCTCACGCATAGAAA
CACGCTCAAAACGGGGAGTGCTGGTCTCAGCTGGGAAGAAACTATTGGAG
AGAACCGAACTGGCTATTGTTCCCGAAGGATCATACATAGGCTTGAAAGA
AGCAAAGAAGCTTCTTGACGAAGCGTATCCTGCGTTTTCGTCCTCCGGAG
TAGTCACAGAGAGTGGCGATTATGTAGCACTAGCTCTACTATTAGAGCGG
AGCAAAGGTTCGAAATCAGTCTTTGCACCGTTTCTGAAGACTCTGCCTGA
ACAGGAAGATCTGGACTGCATACCTTTATGGAGCACCGAAGAACATGAAA
TGTTGCGCGGCTCGACGGTTTACACAGATTTGAAGGAATGGCTTGAGAAC
ACGGAAGAAGAATGGGAAGCCCTTGACAAAGGCATTTTTCAGAAGAGTAG
AGATATGTTTCCTGAAGATTGTTTCTCATTGCGCGACTATCGTTGGGCTC
TGTGTATATCTTCTTCTCGAAGTTTTTATGTCAGTCAGTCTGAACCTTCG
GTACTTGCTCCAATTCTTACCCTATTGAACCCGCCACAACCGGAATCGAC
ACCTTCTGTTTCGGCTGAGTTTAGCGGAGGAATGTTTTTCGCAAAGAAGA
AGCTCATCTTGACCGCTAAAAAGGACATTGAAGACGGCGATGCGGCCACC
GTCAGCTACGGAAAAAGTCTACGAAACGCTGAACTTGCGTTTACAAAGGG
GTTGACAATGAACGATATGCGTTGTAATTCTGTCTCCTTATCCTTTGAGT
TGTCATCTCTTGACCGGCTTTTCGAGGATAAACAAGATATATTGGAATCC
TATGATGTTGAAACTAACCCGAAGTTTGAGATTGTTGGCGGAAGCCAAGT
TGGTGAATATGAGGCGCCGGAAGATATGGACTCGTTTCTTCGTTTACTCT
GCCTGACAGGGGTTGACTCTTTTCTCTTAGAAGGGGTATTTCGAGGAGAA
GTATGGGACTTCATGGGGCTTCCAGTTAGTGCCGAAAATGAGAGGTCTGT
GTGTGAATTGGTAATCAATGCTTGCGCGGATATGCTTGAGGAGTATTCAG
ACGCTTTTGACAATTTTGAAGAAGGCGATCTGACAGAAAGACAAAGAATG
GCCAGATGTATTGTGGAAGGAGAGAAGCAAATTCTGGGGAACTTGCGGAA
AACCTATCAGAGAAGATTGGGAAATCTCGATGGTTTAGAATACTATGCGG
AACGGCGTCTGAAAATGCTAGACTTGCTTCGACCCATTGACGAAAGTGAG
ATAGTTGATTCCGAGAGTGGTGGCCGAGTAGCTCGCGCCTTTGATGAGAA
CTACTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:437820..439226-

>Ggra9232.t1 ID=Ggra9232.t1|Name=Ggra9232.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00000075_pilon:437820..439226- (Gracilaria gracilis GNS1m male)
ATGAGCGCGGTCAAGTCGAGGGAACTGGACGAATGTATTACATGGCTTGA
CACTAATTCGGGGAGGGTCAATAAAGTGCTAAATTTCTCACGCATAGAAA
CACGCTCAAAACGGGGAGTGCTGGTCTCAGCTGGGAAGAAACTATTGGAG
AGAACCGAACTGGCTATTGTTCCCGAAGGATCATACATAGGCTTGAAAGA
AGCAAAGAAGCTTCTTGACGAAGCGTATCCTGCGTTTTCGTCCTCCGGAG
TAGTCACAGAGAGTGGCGATTATGTAGCACTAGCTCTACTATTAGAGCGG
AGCAAAGGTTCGAAATCAGTCTTTGCACCGTTTCTGAAGACTCTGCCTGA
ACAGGAAGATCTGGACTGCATACCTTTATGGAGCACCGAAGAACATGAAA
TGTTGCGCGGCTCGACGGTTTACACAGATTTGAAGGAATGGCTTGAGAAC
ACGGAAGAAGAATGGGAAGCCCTTGACAAAGGCATTTTTCAGAAGAGTAG
AGATATGTTTCCTGAAGATTGTTTCTCATTGCGCGACTATCGTTGGGCTC
TGTGTATATCTTCTTCTCGAAGTTTTTATGTCAGTCAGTCTGAACCTTCG
GTACTTGCTCCAATTCTTACCCTATTGAACCCGCCACAACCGGAATCGAC
ACCTTCTGTTTCGGCTGAGTTTAGCGGAGGAATGTTTTTCGCAAAGAAGA
AGCTCATCTTGACCGCTAAAAAGGACATTGAAGACGGCGATGCGGCCACC
GTCAGCTACGGAAAAAGTCTACGAAACGCTGAACTTGCGTTTACAAAGGG
GTTGACAATGAACGATATGCGTTGTAATTCTGTCTCCTTATCCTTTGAGT
TGTCATCTCTTGACCGGCTTTTCGAGGATAAACAAGATATATTGGAATCC
TATGATGTTGAAACTAACCCGAAGTTTGAGATTGTTGGCGGAAGCCAAGT
TGGTGAATATGAGGCGCCGGAAGATATGGACTCGTTTCTTCGTTTACTCT
GCCTGACAGGGGTTGACTCTTTTCTCTTAGAAGGGGTATTTCGAGGAGAA
GTATGGGACTTCATGGGGCTTCCAGTTAGTGCCGAAAATGAGAGGTCTGT
GTGTGAATTGGTAATCAATGCTTGCGCGGATATGCTTGAGGAGTATTCAG
ACGCTTTTGACAATTTTGAAGAAGGCGATCTGACAGAAAGACAAAGAATG
GCCAGATGTATTGTGGAAGGAGAGAAGCAAATTCTGGGGAACTTGCGGAA
AACCTATCAGAGAAGATTGGGAAATCTCGATGGTTTAGAATACTATGCGG
AACGGCGTCTGAAAATGCTAGACTTGCTTCGACCCATTGACGAAAGTGAG
ATAGTTGATTCCGAGAGTGGTGGCCGAGTAGCTCGCGCCTTTGATGAGAA
CTACTGA
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