Ggra9181.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9181.t1
Unique NameGgra9181.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:315163..315726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123248.KB893337_gene2354
Preferred nameinfC
PFAMsIF3_C,IF3_N
Max annot lvl976|Bacteroidetes
KEGG koko:K02520
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Evalue5.99e-12
EggNOG OGsCOG0290@1|root,COG0290@2|Bacteria,4NIZ5@976|Bacteroidetes,1IRGC@117747|Sphingobacteriia
DescriptionIF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9181Ggra9181Gracilaria gracilis GNS1m malegenetig00000075_pilon 315163..315726 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9181.t1.start1Ggra9181.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 315163..315165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9181.t1.CDS1Ggra9181.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 315163..315726 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9181.t1.exon1Ggra9181.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 315163..315726 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9181.t1.stop1Ggra9181.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 315724..315726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9181.t1Ggra9181.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 315163..315726 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9181.t1 ID=Ggra9181.t1|Name=Ggra9181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQK
KRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDG
YRVKVYMQFKRGQGGLKHSATQSLINAALALAPFGNVQGLPPSASIHDLF
KSDGEEQPQQRKPLELVLQPLPKTQREKLSTDALSVP*
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spliced messenger RNA

>Ggra9181.t1 ID=Ggra9181.t1|Name=Ggra9181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000075_pilon:315163..315726+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGCAGCAGGCGCTCCGTGAGGCGCGCATTCAGGGCAAGGACCT
CATGCAGATCACGCTCGTCAAGTCGGAGCACGCGCATGCCAGCCCGTTGC
CGGTTGTGCGCATTCTGGATTATGGCGCGTTTGAAGAGCAGCGCCAGAAG
AAACGCTATCAGCAACAGAAGGCTACCAAGCAACGCCAGATGGAGCATCG
CAAGCAGTCTGTTTTGAAGCAGATTCGATTCTCTCCGCTCACGGATCGTA
ACGATATGCGCATCAAGCTCAAGCATGCGGCGCAGTTTCTTATCGATGGC
TATCGCGTCAAGGTCTACATGCAGTTCAAAAGAGGCCAGGGCGGTTTGAA
ACATTCCGCAACCCAATCGCTCATCAATGCTGCGCTCGCGCTTGCTCCTT
TCGGAAACGTTCAGGGATTGCCGCCGTCTGCTTCTATACATGATCTGTTT
AAATCTGATGGCGAAGAACAACCGCAGCAACGGAAACCTCTGGAGCTGGT
GTTGCAACCTTTGCCCAAAACACAGAGAGAGAAGCTCAGCACGGACGCGC
TTTCAGTCCCATAA
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protein sequence of Ggra9181.t1

>Ggra9181.t1 ID=Ggra9181.t1|Name=Ggra9181.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MSPQQALREARIQGKDLMQITLVKSEHAHASPLPVVRILDYGAFEEQRQK
KRYQQQKATKQRQMEHRKQSVLKQIRFSPLTDRNDMRIKLKHAAQFLIDG
YRVKVYMQFKRGQGGLKHSATQSLINAALALAPFGNVQGLPPSASIHDLF
KSDGEEQPQQRKPLELVLQPLPKTQREKLSTDALSVP*
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mRNA from alignment at tig00000075_pilon:315163..315726+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9181.t1 ID=Ggra9181.t1|Name=Ggra9181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000075_pilon:315163..315726+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGCAGCAGGCGCTCCGTGAGGCGCGCATTCAGGGCAAGGACCT
CATGCAGATCACGCTCGTCAAGTCGGAGCACGCGCATGCCAGCCCGTTGC
CGGTTGTGCGCATTCTGGATTATGGCGCGTTTGAAGAGCAGCGCCAGAAG
AAACGCTATCAGCAACAGAAGGCTACCAAGCAACGCCAGATGGAGCATCG
CAAGCAGTCTGTTTTGAAGCAGATTCGATTCTCTCCGCTCACGGATCGTA
ACGATATGCGCATCAAGCTCAAGCATGCGGCGCAGTTTCTTATCGATGGC
TATCGCGTCAAGGTCTACATGCAGTTCAAAAGAGGCCAGGGCGGTTTGAA
ACATTCCGCAACCCAATCGCTCATCAATGCTGCGCTCGCGCTTGCTCCTT
TCGGAAACGTTCAGGGATTGCCGCCGTCTGCTTCTATACATGATCTGTTT
AAATCTGATGGCGAAGAACAACCGCAGCAACGGAAACCTCTGGAGCTGGT
GTTGCAACCTTTGCCCAAAACACAGAGAGAGAAGCTCAGCACGGACGCGC
TTTCAGTCCCATAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:315163..315726+

>Ggra9181.t1 ID=Ggra9181.t1|Name=Ggra9181.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000075_pilon:315163..315726+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGCAGCAGGCGCTCCGTGAGGCGCGCATTCAGGGCAAGGACCT
CATGCAGATCACGCTCGTCAAGTCGGAGCACGCGCATGCCAGCCCGTTGC
CGGTTGTGCGCATTCTGGATTATGGCGCGTTTGAAGAGCAGCGCCAGAAG
AAACGCTATCAGCAACAGAAGGCTACCAAGCAACGCCAGATGGAGCATCG
CAAGCAGTCTGTTTTGAAGCAGATTCGATTCTCTCCGCTCACGGATCGTA
ACGATATGCGCATCAAGCTCAAGCATGCGGCGCAGTTTCTTATCGATGGC
TATCGCGTCAAGGTCTACATGCAGTTCAAAAGAGGCCAGGGCGGTTTGAA
ACATTCCGCAACCCAATCGCTCATCAATGCTGCGCTCGCGCTTGCTCCTT
TCGGAAACGTTCAGGGATTGCCGCCGTCTGCTTCTATACATGATCTGTTT
AAATCTGATGGCGAAGAACAACCGCAGCAACGGAAACCTCTGGAGCTGGT
GTTGCAACCTTTGCCCAAAACACAGAGAGAGAAGCTCAGCACGGACGCGC
TTTCAGTCCCATAA
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