Ggra9234.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9234.t1
Unique Name	Ggra9234.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:445358..447193 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9234	Ggra9234	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 445358..447193 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9234.t1	Ggra9234.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 445358..447193 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9234.t1.stop1	Ggra9234.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 445358..445360 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9234.t1.CDS1	Ggra9234.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 445358..446388 -
Ggra9234.t1.CDS2	Ggra9234.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 446452..447193 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9234.t1.exon1	Ggra9234.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 445358..446388 -
Ggra9234.t1.exon2	Ggra9234.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 446452..447193 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9234.t1.intron1	Ggra9234.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000075_pilon 446389..446451 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9234.t1.start1	Ggra9234.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 447191..447193 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:445358..447193-
coding sequence from alignment at tig00000075_pilon:445358..447193-

mRNA sequence

>Ggra9234.t1 ID=Ggra9234.t1|Name=Ggra9234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
MSAFSFRRRLNRGASSSAKLASSSSPPPPQPPPAHACACNELLAHRPLRV
FCIPCVFVVPPVQCHCAPPLNHPVPESSAAAAPLHVSASTTLTPANAPAS
NLPAQSFMPPHAAPPRQPARNAEQPPASHRRAQPTAAHGSADVNALSSLA
PSSFLHDLNANMTVVLNLNDPSTALPPTTAFAPEAQIHTGRALTAVQPNV
ALNAARSEAEPSSPRSYSSSESRDVLDDDSDITQETSYDSLVKQLQQTSP
EAFSRALHAVKAADLSADSRNKLMHALENALQTLCIEQTDHVSLPHSNIR
IEAYTALASFYATTTCPQNNKVIEYCQLGLDLAAGRERLFPQLVANLHAL
KARVLVSIGDMSRIQEAISHAKAAQVALYAIRDPKLHYELCVTLGDAYTV
LMDGAVCDNIYTAYEWYRAAIELSKMTASESPIKVMWLSCRTAQLILRYL
RQKRSGQNMKENEQHGGKKVGATCSMSISNLLTIVEQLRIDVEKVREKVR
ESEMNVSDELRRLESVVFECIGKAYFERARTSSTKVQDLKKAASSMHKAL
SLSLCEADPCGHRYAGIQEMIDDVQSQLKTAEASNQMKRR*

spliced messenger RNA

>Ggra9234.t1 ID=Ggra9234.t1|Name=Ggra9234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000075_pilon:445358..447193- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCTTCTCGTTTCGCCGCCGTCTCAACCGCGGCGCCAGCTCGTC
GGCCAAGCTCGCGTCGTCGTCGTCGCCGCCGCCGCCGCAGCCCCCGCCCG
CGCACGCCTGCGCCTGCAATGAGCTGCTTGCTCACCGCCCGCTGCGCGTG
TTCTGCATTCCGTGCGTCTTCGTCGTGCCGCCCGTGCAATGCCACTGCGC
GCCGCCGCTCAATCACCCCGTGCCGGAGTCGTCCGCCGCGGCTGCGCCGT
TGCACGTCTCGGCCTCCACCACGCTCACGCCCGCCAATGCGCCCGCGTCC
AATCTGCCCGCGCAGTCCTTCATGCCGCCGCATGCCGCTCCGCCGCGACA
GCCCGCTCGCAATGCGGAACAACCGCCCGCCTCGCATCGTCGCGCGCAGC
CCACTGCTGCGCACGGCAGCGCCGACGTTAACGCGCTGTCCAGTCTGGCG
CCGTCGTCCTTCTTGCATGATCTTAATGCCAACATGACCGTCGTGCTCAA
TCTCAATGACCCTTCCACTGCGCTGCCGCCCACCACCGCCTTCGCCCCCG
AGGCGCAGATTCACACCGGCCGTGCGCTCACCGCCGTGCAGCCCAACGTT
GCGCTTAATGCCGCGCGCAGCGAGGCCGAACCTTCGTCGCCTCGCTCCTA
CTCCAGCTCCGAGTCGAGGGACGTGCTTGACGATGACAGTGATATTACTC
AGGAAACTTCGTACGACTCTCTCGTCAAACAGTTGCAGCAAACTTCTCCG
GAGGCGTTTTCACGCGCTCTGCACGCCGTCAAGGCCGCCGACCTCTCCGC
TGACTCGAGAAACAAGCTCATGCACGCCCTTGAAAACGCGTTGCAGACGT
TGTGCATTGAACAAACAGACCATGTTTCATTACCGCACTCCAACATTCGC
ATCGAGGCCTATACTGCCTTGGCGTCGTTTTACGCCACCACAACTTGCCC
GCAAAACAACAAAGTCATCGAGTACTGCCAATTGGGTCTGGACCTAGCTG
CCGGCCGAGAGCGTCTATTCCCGCAATTGGTAGCCAACTTGCATGCACTC
AAAGCTCGCGTGCTTGTTAGCATTGGTGACATGTCTCGTATTCAAGAAGC
CATTTCGCACGCAAAGGCGGCGCAGGTTGCTTTGTACGCCATCCGCGATC
CTAAGCTGCATTATGAATTGTGTGTCACCCTGGGAGACGCGTACACAGTT
CTCATGGACGGCGCAGTCTGTGACAATATCTACACGGCGTACGAATGGTA
CAGAGCAGCCATTGAGCTTTCCAAGATGACCGCTTCGGAATCGCCCATCA
AGGTCATGTGGCTCTCGTGTCGAACAGCGCAGTTGATTCTGCGCTATCTC
AGACAAAAACGAAGCGGTCAGAACATGAAGGAGAATGAACAACACGGAGG
GAAGAAAGTCGGTGCCACATGCAGCATGTCAATATCCAACCTGCTTACTA
TTGTGGAACAACTGCGCATAGACGTAGAAAAGGTTCGTGAAAAGGTTCGT
GAAAGCGAGATGAACGTGTCGGACGAGTTGCGACGACTTGAATCCGTGGT
TTTTGAGTGCATTGGTAAGGCCTACTTTGAACGAGCAAGGACCTCGAGTA
CAAAAGTGCAGGACCTTAAAAAGGCTGCGTCAAGCATGCATAAGGCACTC
TCTTTGAGTTTATGCGAAGCAGACCCGTGCGGTCATCGCTATGCTGGGAT
TCAAGAGATGATTGACGACGTTCAGTCACAATTGAAGACAGCCGAAGCTT
CAAATCAAATGAAACGACGGTGA

protein sequence of Ggra9234.t1

>Ggra9234.t1 ID=Ggra9234.t1|Name=Ggra9234.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MSAFSFRRRLNRGASSSAKLASSSSPPPPQPPPAHACACNELLAHRPLRV
FCIPCVFVVPPVQCHCAPPLNHPVPESSAAAAPLHVSASTTLTPANAPAS
NLPAQSFMPPHAAPPRQPARNAEQPPASHRRAQPTAAHGSADVNALSSLA
PSSFLHDLNANMTVVLNLNDPSTALPPTTAFAPEAQIHTGRALTAVQPNV
ALNAARSEAEPSSPRSYSSSESRDVLDDDSDITQETSYDSLVKQLQQTSP
EAFSRALHAVKAADLSADSRNKLMHALENALQTLCIEQTDHVSLPHSNIR
IEAYTALASFYATTTCPQNNKVIEYCQLGLDLAAGRERLFPQLVANLHAL
KARVLVSIGDMSRIQEAISHAKAAQVALYAIRDPKLHYELCVTLGDAYTV
LMDGAVCDNIYTAYEWYRAAIELSKMTASESPIKVMWLSCRTAQLILRYL
RQKRSGQNMKENEQHGGKKVGATCSMSISNLLTIVEQLRIDVEKVREKVR
ESEMNVSDELRRLESVVFECIGKAYFERARTSSTKVQDLKKAASSMHKAL
SLSLCEADPCGHRYAGIQEMIDDVQSQLKTAEASNQMKRR*

mRNA from alignment at tig00000075_pilon:445358..447193-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9234.t1 ID=Ggra9234.t1|Name=Ggra9234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000075_pilon:445358..447193- (Gracilaria gracilis GNS1m male)
ATGTCTGCCTTCTCGTTTCGCCGCCGTCTCAACCGCGGCGCCAGCTCGTC
GGCCAAGCTCGCGTCGTCGTCGTCGCCGCCGCCGCCGCAGCCCCCGCCCG
CGCACGCCTGCGCCTGCAATGAGCTGCTTGCTCACCGCCCGCTGCGCGTG
TTCTGCATTCCGTGCGTCTTCGTCGTGCCGCCCGTGCAATGCCACTGCGC
GCCGCCGCTCAATCACCCCGTGCCGGAGTCGTCCGCCGCGGCTGCGCCGT
TGCACGTCTCGGCCTCCACCACGCTCACGCCCGCCAATGCGCCCGCGTCC
AATCTGCCCGCGCAGTCCTTCATGCCGCCGCATGCCGCTCCGCCGCGACA
GCCCGCTCGCAATGCGGAACAACCGCCCGCCTCGCATCGTCGCGCGCAGC
CCACTGCTGCGCACGGCAGCGCCGACGTTAACGCGCTGTCCAGTCTGGCG
CCGTCGTCCTTCTTGCATGATCTTAATGCCAACATGACCGTCGTGCTCAA
TCTCAATGACCCTTCCACTGCGCTGCCGCCCACCACCGCCTTCGCCCCCG
AGGCGCAGATTCACACCGGCCGTGCGCTCACCGCCGTGCAGCCCAACGTT
GCGCTTAATGCCGCGCGCAGCGAGGCCGAACCTTCGTCGCCTCGCTCCTA
CTCCAGCTCCGAGTCGAGGGACGTGCTTGACGATGACAGTGATATTACTC
AGGAAACTTCGTACGACTCTCTCGTCAAACAGTTGCAGCAAAGTAAGTTT
CACGTCTCGCTTTCATGCGCCCGTAAAAGCACATGTGTCTGACCTTTTCC
CTCAGCTTCTCCGGAGGCGTTTTCACGCGCTCTGCACGCCGTCAAGGCCG
CCGACCTCTCCGCTGACTCGAGAAACAAGCTCATGCACGCCCTTGAAAAC
GCGTTGCAGACGTTGTGCATTGAACAAACAGACCATGTTTCATTACCGCA
CTCCAACATTCGCATCGAGGCCTATACTGCCTTGGCGTCGTTTTACGCCA
CCACAACTTGCCCGCAAAACAACAAAGTCATCGAGTACTGCCAATTGGGT
CTGGACCTAGCTGCCGGCCGAGAGCGTCTATTCCCGCAATTGGTAGCCAA
CTTGCATGCACTCAAAGCTCGCGTGCTTGTTAGCATTGGTGACATGTCTC
GTATTCAAGAAGCCATTTCGCACGCAAAGGCGGCGCAGGTTGCTTTGTAC
GCCATCCGCGATCCTAAGCTGCATTATGAATTGTGTGTCACCCTGGGAGA
CGCGTACACAGTTCTCATGGACGGCGCAGTCTGTGACAATATCTACACGG
CGTACGAATGGTACAGAGCAGCCATTGAGCTTTCCAAGATGACCGCTTCG
GAATCGCCCATCAAGGTCATGTGGCTCTCGTGTCGAACAGCGCAGTTGAT
TCTGCGCTATCTCAGACAAAAACGAAGCGGTCAGAACATGAAGGAGAATG
AACAACACGGAGGGAAGAAAGTCGGTGCCACATGCAGCATGTCAATATCC
AACCTGCTTACTATTGTGGAACAACTGCGCATAGACGTAGAAAAGGTTCG
TGAAAAGGTTCGTGAAAGCGAGATGAACGTGTCGGACGAGTTGCGACGAC
TTGAATCCGTGGTTTTTGAGTGCATTGGTAAGGCCTACTTTGAACGAGCA
AGGACCTCGAGTACAAAAGTGCAGGACCTTAAAAAGGCTGCGTCAAGCAT
GCATAAGGCACTCTCTTTGAGTTTATGCGAAGCAGACCCGTGCGGTCATC
GCTATGCTGGGATTCAAGAGATGATTGACGACGTTCAGTCACAATTGAAG
ACAGCCGAAGCTTCAAATCAAATGAAACGACGGTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:445358..447193-

>Ggra9234.t1 ID=Ggra9234.t1|Name=Ggra9234.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000075_pilon:445358..447193- (Gracilaria gracilis GNS1m male)
ATGTCTGCCTTCTCGTTTCGCCGCCGTCTCAACCGCGGCGCCAGCTCGTC
GGCCAAGCTCGCGTCGTCGTCGTCGCCGCCGCCGCCGCAGCCCCCGCCCG
CGCACGCCTGCGCCTGCAATGAGCTGCTTGCTCACCGCCCGCTGCGCGTG
TTCTGCATTCCGTGCGTCTTCGTCGTGCCGCCCGTGCAATGCCACTGCGC
GCCGCCGCTCAATCACCCCGTGCCGGAGTCGTCCGCCGCGGCTGCGCCGT
TGCACGTCTCGGCCTCCACCACGCTCACGCCCGCCAATGCGCCCGCGTCC
AATCTGCCCGCGCAGTCCTTCATGCCGCCGCATGCCGCTCCGCCGCGACA
GCCCGCTCGCAATGCGGAACAACCGCCCGCCTCGCATCGTCGCGCGCAGC
CCACTGCTGCGCACGGCAGCGCCGACGTTAACGCGCTGTCCAGTCTGGCG
CCGTCGTCCTTCTTGCATGATCTTAATGCCAACATGACCGTCGTGCTCAA
TCTCAATGACCCTTCCACTGCGCTGCCGCCCACCACCGCCTTCGCCCCCG
AGGCGCAGATTCACACCGGCCGTGCGCTCACCGCCGTGCAGCCCAACGTT
GCGCTTAATGCCGCGCGCAGCGAGGCCGAACCTTCGTCGCCTCGCTCCTA
CTCCAGCTCCGAGTCGAGGGACGTGCTTGACGATGACAGTGATATTACTC
AGGAAACTTCGTACGACTCTCTCGTCAAACAGTTGCAGCAAACTTCTCCG
GAGGCGTTTTCACGCGCTCTGCACGCCGTCAAGGCCGCCGACCTCTCCGC
TGACTCGAGAAACAAGCTCATGCACGCCCTTGAAAACGCGTTGCAGACGT
TGTGCATTGAACAAACAGACCATGTTTCATTACCGCACTCCAACATTCGC
ATCGAGGCCTATACTGCCTTGGCGTCGTTTTACGCCACCACAACTTGCCC
GCAAAACAACAAAGTCATCGAGTACTGCCAATTGGGTCTGGACCTAGCTG
CCGGCCGAGAGCGTCTATTCCCGCAATTGGTAGCCAACTTGCATGCACTC
AAAGCTCGCGTGCTTGTTAGCATTGGTGACATGTCTCGTATTCAAGAAGC
CATTTCGCACGCAAAGGCGGCGCAGGTTGCTTTGTACGCCATCCGCGATC
CTAAGCTGCATTATGAATTGTGTGTCACCCTGGGAGACGCGTACACAGTT
CTCATGGACGGCGCAGTCTGTGACAATATCTACACGGCGTACGAATGGTA
CAGAGCAGCCATTGAGCTTTCCAAGATGACCGCTTCGGAATCGCCCATCA
AGGTCATGTGGCTCTCGTGTCGAACAGCGCAGTTGATTCTGCGCTATCTC
AGACAAAAACGAAGCGGTCAGAACATGAAGGAGAATGAACAACACGGAGG
GAAGAAAGTCGGTGCCACATGCAGCATGTCAATATCCAACCTGCTTACTA
TTGTGGAACAACTGCGCATAGACGTAGAAAAGGTTCGTGAAAAGGTTCGT
GAAAGCGAGATGAACGTGTCGGACGAGTTGCGACGACTTGAATCCGTGGT
TTTTGAGTGCATTGGTAAGGCCTACTTTGAACGAGCAAGGACCTCGAGTA
CAAAAGTGCAGGACCTTAAAAAGGCTGCGTCAAGCATGCATAAGGCACTC
TCTTTGAGTTTATGCGAAGCAGACCCGTGCGGTCATCGCTATGCTGGGAT
TCAAGAGATGATTGACGACGTTCAGTCACAATTGAAGACAGCCGAAGCTT
CAAATCAAATGAAACGACGGTGA