Ggra9189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9189.t1
Unique NameGgra9189.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:338329..339507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703990.1
Preferred nameKIN
PFAMsKin17_mid,zf-C2H2_jaz,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K13102,ko:K17260
KEGG Pathwayko04138,ko04530,map04138,map04530
GOsGO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016363,GO:0022402,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0033554,GO:0034399,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1902969,GO:1903047
Evalue2.6e-82
EggNOG OGsKOG2837@1|root,KOG2837@2759|Eukaryota
DescriptionDNA replication
COG categoryA
BRITEko00000,ko00001,ko03041,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9189Ggra9189Gracilaria gracilis GNS1m malegenetig00000075_pilon 338329..339507 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9189.t1.stop1Ggra9189.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 338329..338331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9189.t1.CDS1Ggra9189.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 338329..339507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9189.t1.exon1Ggra9189.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 338329..339507 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9189.t1.start1Ggra9189.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 339505..339507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9189.t1Ggra9189.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 338329..339507 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9189.t1 ID=Ggra9189.t1|Name=Ggra9189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MGNDGFLTAKAISKRIKAKGLGRLRWYCQMCEKQCRDENGFKCHTKSAGH
QRQLTMFAENPSEYINRFSETFRKEFLVVLRQRYGTNFVHANTVYQECIK
DRDHVHMNATKWTTLTAFIKELGKEGHCRVEDREDGWWVAYLARENFEKE
RRAKEMRSHTLESEERAAILLRNQVSRAKTTGGTRRKPTEDGESDVVDAK
PVSIALSKKVGKRKVADTPPNAIESRFFSRTDEAESSSKKKRIRSGRWTG
FEEAEPKSFKAEESETDDENHAPNTGADVPWLHIDTLVKITNTNLGGGAF
VGKKGRVVKIIDGFGARVQLAESGTVLELDQDDLETVIPKPGGVVYLLRG
RYRGKKAVVRSIDIDKFSVRVELLDTNEELSGIEYEAVSRAA*
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spliced messenger RNA

>Ggra9189.t1 ID=Ggra9189.t1|Name=Ggra9189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000075_pilon:338329..339507- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACGATGGTTTCTTGACTGCCAAGGCAATATCTAAACGGATTAA
AGCGAAGGGTCTTGGACGCTTAAGATGGTACTGCCAAATGTGTGAGAAGC
AGTGCAGAGATGAGAACGGTTTCAAGTGCCATACAAAGAGTGCTGGACAT
CAGCGCCAACTCACAATGTTTGCAGAGAACCCGTCGGAGTACATAAACCG
GTTCTCTGAAACGTTTCGAAAAGAGTTCCTGGTTGTGTTACGGCAAAGGT
ATGGCACAAACTTTGTCCATGCGAACACCGTTTATCAGGAGTGCATTAAG
GACCGAGACCATGTACACATGAACGCTACGAAATGGACCACTCTCACCGC
CTTTATAAAAGAACTGGGGAAAGAGGGCCACTGCCGTGTGGAAGATAGAG
AAGACGGTTGGTGGGTGGCATATCTTGCCAGAGAAAACTTCGAAAAAGAA
CGAAGGGCCAAGGAAATGCGTTCCCATACCCTGGAAAGTGAAGAAAGAGC
CGCTATCCTTCTGCGTAACCAAGTCAGTCGTGCTAAAACCACCGGAGGAA
CCCGCAGAAAACCAACTGAGGATGGAGAATCTGACGTTGTGGATGCAAAA
CCCGTAAGCATTGCCTTGTCGAAAAAGGTTGGAAAACGGAAAGTTGCCGA
TACACCCCCAAATGCTATTGAGTCCCGCTTTTTCTCAAGAACAGACGAAG
CCGAATCCTCATCGAAGAAAAAACGAATACGATCAGGGAGATGGACTGGA
TTTGAGGAAGCCGAACCTAAGAGTTTTAAAGCCGAGGAAAGCGAGACAGA
CGATGAAAATCATGCACCGAACACAGGAGCTGATGTTCCATGGCTTCATA
TAGATACCCTTGTTAAGATCACCAACACGAATCTTGGCGGCGGGGCGTTT
GTCGGAAAGAAAGGACGAGTTGTGAAGATTATTGATGGCTTCGGGGCCCG
AGTACAATTGGCAGAATCTGGAACGGTTCTTGAATTGGACCAAGACGACC
TCGAGACCGTTATTCCCAAACCAGGGGGTGTTGTTTACCTTTTACGTGGT
AGATACCGGGGCAAGAAAGCAGTAGTGAGGTCAATAGATATAGACAAGTT
CAGCGTTCGCGTTGAGCTTCTTGACACGAATGAAGAGCTTTCAGGGATAG
AGTATGAGGCAGTCTCTCGAGCGGCCTAA
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protein sequence of Ggra9189.t1

>Ggra9189.t1 ID=Ggra9189.t1|Name=Ggra9189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MGNDGFLTAKAISKRIKAKGLGRLRWYCQMCEKQCRDENGFKCHTKSAGH
QRQLTMFAENPSEYINRFSETFRKEFLVVLRQRYGTNFVHANTVYQECIK
DRDHVHMNATKWTTLTAFIKELGKEGHCRVEDREDGWWVAYLARENFEKE
RRAKEMRSHTLESEERAAILLRNQVSRAKTTGGTRRKPTEDGESDVVDAK
PVSIALSKKVGKRKVADTPPNAIESRFFSRTDEAESSSKKKRIRSGRWTG
FEEAEPKSFKAEESETDDENHAPNTGADVPWLHIDTLVKITNTNLGGGAF
VGKKGRVVKIIDGFGARVQLAESGTVLELDQDDLETVIPKPGGVVYLLRG
RYRGKKAVVRSIDIDKFSVRVELLDTNEELSGIEYEAVSRAA*
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mRNA from alignment at tig00000075_pilon:338329..339507-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9189.t1 ID=Ggra9189.t1|Name=Ggra9189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000075_pilon:338329..339507- (Gracilaria gracilis GNS1m male)
ATGGGAAACGATGGTTTCTTGACTGCCAAGGCAATATCTAAACGGATTAA
AGCGAAGGGTCTTGGACGCTTAAGATGGTACTGCCAAATGTGTGAGAAGC
AGTGCAGAGATGAGAACGGTTTCAAGTGCCATACAAAGAGTGCTGGACAT
CAGCGCCAACTCACAATGTTTGCAGAGAACCCGTCGGAGTACATAAACCG
GTTCTCTGAAACGTTTCGAAAAGAGTTCCTGGTTGTGTTACGGCAAAGGT
ATGGCACAAACTTTGTCCATGCGAACACCGTTTATCAGGAGTGCATTAAG
GACCGAGACCATGTACACATGAACGCTACGAAATGGACCACTCTCACCGC
CTTTATAAAAGAACTGGGGAAAGAGGGCCACTGCCGTGTGGAAGATAGAG
AAGACGGTTGGTGGGTGGCATATCTTGCCAGAGAAAACTTCGAAAAAGAA
CGAAGGGCCAAGGAAATGCGTTCCCATACCCTGGAAAGTGAAGAAAGAGC
CGCTATCCTTCTGCGTAACCAAGTCAGTCGTGCTAAAACCACCGGAGGAA
CCCGCAGAAAACCAACTGAGGATGGAGAATCTGACGTTGTGGATGCAAAA
CCCGTAAGCATTGCCTTGTCGAAAAAGGTTGGAAAACGGAAAGTTGCCGA
TACACCCCCAAATGCTATTGAGTCCCGCTTTTTCTCAAGAACAGACGAAG
CCGAATCCTCATCGAAGAAAAAACGAATACGATCAGGGAGATGGACTGGA
TTTGAGGAAGCCGAACCTAAGAGTTTTAAAGCCGAGGAAAGCGAGACAGA
CGATGAAAATCATGCACCGAACACAGGAGCTGATGTTCCATGGCTTCATA
TAGATACCCTTGTTAAGATCACCAACACGAATCTTGGCGGCGGGGCGTTT
GTCGGAAAGAAAGGACGAGTTGTGAAGATTATTGATGGCTTCGGGGCCCG
AGTACAATTGGCAGAATCTGGAACGGTTCTTGAATTGGACCAAGACGACC
TCGAGACCGTTATTCCCAAACCAGGGGGTGTTGTTTACCTTTTACGTGGT
AGATACCGGGGCAAGAAAGCAGTAGTGAGGTCAATAGATATAGACAAGTT
CAGCGTTCGCGTTGAGCTTCTTGACACGAATGAAGAGCTTTCAGGGATAG
AGTATGAGGCAGTCTCTCGAGCGGCCTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:338329..339507-

>Ggra9189.t1 ID=Ggra9189.t1|Name=Ggra9189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000075_pilon:338329..339507- (Gracilaria gracilis GNS1m male)
ATGGGAAACGATGGTTTCTTGACTGCCAAGGCAATATCTAAACGGATTAA
AGCGAAGGGTCTTGGACGCTTAAGATGGTACTGCCAAATGTGTGAGAAGC
AGTGCAGAGATGAGAACGGTTTCAAGTGCCATACAAAGAGTGCTGGACAT
CAGCGCCAACTCACAATGTTTGCAGAGAACCCGTCGGAGTACATAAACCG
GTTCTCTGAAACGTTTCGAAAAGAGTTCCTGGTTGTGTTACGGCAAAGGT
ATGGCACAAACTTTGTCCATGCGAACACCGTTTATCAGGAGTGCATTAAG
GACCGAGACCATGTACACATGAACGCTACGAAATGGACCACTCTCACCGC
CTTTATAAAAGAACTGGGGAAAGAGGGCCACTGCCGTGTGGAAGATAGAG
AAGACGGTTGGTGGGTGGCATATCTTGCCAGAGAAAACTTCGAAAAAGAA
CGAAGGGCCAAGGAAATGCGTTCCCATACCCTGGAAAGTGAAGAAAGAGC
CGCTATCCTTCTGCGTAACCAAGTCAGTCGTGCTAAAACCACCGGAGGAA
CCCGCAGAAAACCAACTGAGGATGGAGAATCTGACGTTGTGGATGCAAAA
CCCGTAAGCATTGCCTTGTCGAAAAAGGTTGGAAAACGGAAAGTTGCCGA
TACACCCCCAAATGCTATTGAGTCCCGCTTTTTCTCAAGAACAGACGAAG
CCGAATCCTCATCGAAGAAAAAACGAATACGATCAGGGAGATGGACTGGA
TTTGAGGAAGCCGAACCTAAGAGTTTTAAAGCCGAGGAAAGCGAGACAGA
CGATGAAAATCATGCACCGAACACAGGAGCTGATGTTCCATGGCTTCATA
TAGATACCCTTGTTAAGATCACCAACACGAATCTTGGCGGCGGGGCGTTT
GTCGGAAAGAAAGGACGAGTTGTGAAGATTATTGATGGCTTCGGGGCCCG
AGTACAATTGGCAGAATCTGGAACGGTTCTTGAATTGGACCAAGACGACC
TCGAGACCGTTATTCCCAAACCAGGGGGTGTTGTTTACCTTTTACGTGGT
AGATACCGGGGCAAGAAAGCAGTAGTGAGGTCAATAGATATAGACAAGTT
CAGCGTTCGCGTTGAGCTTCTTGACACGAATGAAGAGCTTTCAGGGATAG
AGTATGAGGCAGTCTCTCGAGCGGCCTAA
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