Ggra9257.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9257.t1
Unique Name	Ggra9257.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:609545..611185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005848067.1
PFAMs	TPM_phosphatase
Max annot lvl	3041\|Chlorophyta
Evalue	1.4e-15
EggNOG OGs	291EZ@1\|root,2R8AW@2759\|Eukaryota,3808J@33090\|Viridiplantae,34M4F@3041\|Chlorophyta
Description	Pfam:TPM
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9257	Ggra9257	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 609545..611185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9257.t1.start1	Ggra9257.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 609545..609547 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9257.t1.CDS1	Ggra9257.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 609545..611185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9257.t1.exon1	Ggra9257.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 609545..611185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9257.t1.stop1	Ggra9257.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 611183..611185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9257.t1	Ggra9257.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 609545..611185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:609545..611185+
coding sequence from alignment at tig00000075_pilon:609545..611185+

mRNA sequence

>Ggra9257.t1 ID=Ggra9257.t1|Name=Ggra9257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MKCIASLFLFAFLCIKQTVALTDTVSPESLPPPWADNRGICHPRDHNYAA
SSSICDPSGLLSRNEISKLDQTLNRMYSGTRPYSLVRCGDNYHSDPSHPP
SHGFHVAIAVVRRMQFDEQTLSKRAENFANIVFDNWQLTENCGAGVLLFV
SMDDRRMYMKTGDTAVKYLNEHQIDDVYSKMVPKLKRDRLGAALRAGVGR
IGHYLSKYNGEHPGARSTGARDSGSGSRTSPSWWDWELSIVAVIFSALAV
IACCNGVGGIEAARKRREKKQMLRKLDTVRDEYFGSMTDHYAPSTCPICH
DKITLSWEPTETPASESEALVDGEAPPRRRSVRTLRCGHAFHDSCLEDDY
LTPGGGTPQCPVCGDAGTGTTSPEPLRETRMRDVSFRLNRLHDQYPHILT
DDVMAKLESEPPNIWPNPMKDSYLKPIRRPRALGEEDEVQRSSGNFWTGV
GGALAAGGIGALIGSFFGQRGRNDGSYSNIGGNNDTQGFWGGSSGGGHGT
GWGNAFSGGGGGFGSGWGGGGGGHGIGFSGGGGGGGGGGGGHGTGW*

spliced messenger RNA

>Ggra9257.t1 ID=Ggra9257.t1|Name=Ggra9257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000075_pilon:609545..611185+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGTATTGCTTCTTTGTTTCTCTTTGCCTTTCTTTGTATCAAGCA
AACCGTTGCGTTGACAGATACAGTCTCTCCTGAATCACTTCCCCCGCCAT
GGGCCGACAACCGTGGCATCTGTCATCCCAGAGATCACAATTATGCAGCG
TCTAGTTCTATTTGTGATCCATCTGGTCTACTAAGCAGGAATGAAATCTC
AAAACTTGATCAAACTCTAAACCGGATGTACTCAGGCACTCGTCCTTACT
CACTTGTGAGATGTGGAGACAATTATCATTCTGATCCCTCTCATCCACCA
AGCCATGGATTTCACGTCGCAATTGCAGTTGTCAGGCGAATGCAATTTGA
TGAACAAACCCTCTCTAAGCGTGCGGAGAACTTTGCAAACATTGTCTTCG
ACAACTGGCAGTTGACGGAGAATTGCGGTGCAGGTGTTCTTCTCTTCGTT
TCAATGGATGACAGAAGAATGTATATGAAAACTGGAGATACCGCCGTCAA
GTATCTCAATGAGCATCAGATCGACGACGTATACTCAAAAATGGTACCCA
AACTCAAGAGAGATCGACTTGGAGCCGCTTTACGTGCTGGCGTTGGCAGA
ATTGGGCACTACCTCTCAAAGTACAACGGAGAGCATCCGGGCGCAAGGTC
GACGGGAGCCCGTGACAGCGGTTCGGGTTCTCGCACATCTCCGTCCTGGT
GGGACTGGGAGCTTTCCATAGTTGCGGTGATCTTCTCTGCTTTGGCCGTC
ATCGCATGCTGCAATGGTGTCGGTGGCATTGAAGCTGCCAGAAAGAGAAG
AGAGAAGAAACAAATGCTGCGCAAACTTGATACTGTTCGCGACGAGTATT
TTGGTAGCATGACTGATCACTACGCACCCTCAACTTGCCCAATCTGTCAC
GACAAGATAACCCTGTCATGGGAGCCTACTGAAACGCCTGCATCAGAAAG
TGAGGCTCTTGTGGATGGCGAGGCGCCGCCGAGAAGACGGTCTGTACGAA
CTTTGCGATGTGGTCATGCTTTCCATGATAGCTGCTTAGAAGACGACTAC
CTGACTCCAGGCGGTGGCACGCCTCAGTGTCCAGTTTGCGGAGACGCAGG
TACGGGAACGACTAGTCCTGAGCCGCTGCGAGAAACTCGTATGAGAGACG
TTTCATTCCGTTTGAATCGGTTACATGACCAATACCCACACATCCTCACT
GATGATGTGATGGCGAAATTGGAATCCGAGCCACCAAACATATGGCCAAA
CCCAATGAAAGATTCGTACCTGAAACCTATTCGGCGTCCCCGAGCACTCG
GTGAAGAGGATGAGGTACAAAGGAGCAGCGGTAATTTCTGGACTGGAGTC
GGAGGCGCACTAGCTGCAGGTGGCATTGGGGCGCTCATTGGCTCCTTCTT
TGGACAACGCGGTCGAAACGACGGCTCGTACTCCAACATTGGCGGGAACA
ATGATACCCAGGGTTTCTGGGGAGGTAGCTCTGGTGGTGGTCATGGTACA
GGTTGGGGCAACGCATTCTCTGGAGGAGGAGGGGGCTTCGGTTCTGGTTG
GGGTGGTGGAGGTGGAGGCCACGGAATTGGATTCAGCGGAggaggcggag
gcggaggcggaggcggaggAGGACATGGAACAGGATGGTAG

protein sequence of Ggra9257.t1

>Ggra9257.t1 ID=Ggra9257.t1|Name=Ggra9257.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MKCIASLFLFAFLCIKQTVALTDTVSPESLPPPWADNRGICHPRDHNYAA
SSSICDPSGLLSRNEISKLDQTLNRMYSGTRPYSLVRCGDNYHSDPSHPP
SHGFHVAIAVVRRMQFDEQTLSKRAENFANIVFDNWQLTENCGAGVLLFV
SMDDRRMYMKTGDTAVKYLNEHQIDDVYSKMVPKLKRDRLGAALRAGVGR
IGHYLSKYNGEHPGARSTGARDSGSGSRTSPSWWDWELSIVAVIFSALAV
IACCNGVGGIEAARKRREKKQMLRKLDTVRDEYFGSMTDHYAPSTCPICH
DKITLSWEPTETPASESEALVDGEAPPRRRSVRTLRCGHAFHDSCLEDDY
LTPGGGTPQCPVCGDAGTGTTSPEPLRETRMRDVSFRLNRLHDQYPHILT
DDVMAKLESEPPNIWPNPMKDSYLKPIRRPRALGEEDEVQRSSGNFWTGV
GGALAAGGIGALIGSFFGQRGRNDGSYSNIGGNNDTQGFWGGSSGGGHGT
GWGNAFSGGGGGFGSGWGGGGGGHGIGFSGGGGGGGGGGGGHGTGW*

mRNA from alignment at tig00000075_pilon:609545..611185+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9257.t1 ID=Ggra9257.t1|Name=Ggra9257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000075_pilon:609545..611185+ (Gracilaria gracilis GNS1m male)
ATGAAGTGTATTGCTTCTTTGTTTCTCTTTGCCTTTCTTTGTATCAAGCA
AACCGTTGCGTTGACAGATACAGTCTCTCCTGAATCACTTCCCCCGCCAT
GGGCCGACAACCGTGGCATCTGTCATCCCAGAGATCACAATTATGCAGCG
TCTAGTTCTATTTGTGATCCATCTGGTCTACTAAGCAGGAATGAAATCTC
AAAACTTGATCAAACTCTAAACCGGATGTACTCAGGCACTCGTCCTTACT
CACTTGTGAGATGTGGAGACAATTATCATTCTGATCCCTCTCATCCACCA
AGCCATGGATTTCACGTCGCAATTGCAGTTGTCAGGCGAATGCAATTTGA
TGAACAAACCCTCTCTAAGCGTGCGGAGAACTTTGCAAACATTGTCTTCG
ACAACTGGCAGTTGACGGAGAATTGCGGTGCAGGTGTTCTTCTCTTCGTT
TCAATGGATGACAGAAGAATGTATATGAAAACTGGAGATACCGCCGTCAA
GTATCTCAATGAGCATCAGATCGACGACGTATACTCAAAAATGGTACCCA
AACTCAAGAGAGATCGACTTGGAGCCGCTTTACGTGCTGGCGTTGGCAGA
ATTGGGCACTACCTCTCAAAGTACAACGGAGAGCATCCGGGCGCAAGGTC
GACGGGAGCCCGTGACAGCGGTTCGGGTTCTCGCACATCTCCGTCCTGGT
GGGACTGGGAGCTTTCCATAGTTGCGGTGATCTTCTCTGCTTTGGCCGTC
ATCGCATGCTGCAATGGTGTCGGTGGCATTGAAGCTGCCAGAAAGAGAAG
AGAGAAGAAACAAATGCTGCGCAAACTTGATACTGTTCGCGACGAGTATT
TTGGTAGCATGACTGATCACTACGCACCCTCAACTTGCCCAATCTGTCAC
GACAAGATAACCCTGTCATGGGAGCCTACTGAAACGCCTGCATCAGAAAG
TGAGGCTCTTGTGGATGGCGAGGCGCCGCCGAGAAGACGGTCTGTACGAA
CTTTGCGATGTGGTCATGCTTTCCATGATAGCTGCTTAGAAGACGACTAC
CTGACTCCAGGCGGTGGCACGCCTCAGTGTCCAGTTTGCGGAGACGCAGG
TACGGGAACGACTAGTCCTGAGCCGCTGCGAGAAACTCGTATGAGAGACG
TTTCATTCCGTTTGAATCGGTTACATGACCAATACCCACACATCCTCACT
GATGATGTGATGGCGAAATTGGAATCCGAGCCACCAAACATATGGCCAAA
CCCAATGAAAGATTCGTACCTGAAACCTATTCGGCGTCCCCGAGCACTCG
GTGAAGAGGATGAGGTACAAAGGAGCAGCGGTAATTTCTGGACTGGAGTC
GGAGGCGCACTAGCTGCAGGTGGCATTGGGGCGCTCATTGGCTCCTTCTT
TGGACAACGCGGTCGAAACGACGGCTCGTACTCCAACATTGGCGGGAACA
ATGATACCCAGGGTTTCTGGGGAGGTAGCTCTGGTGGTGGTCATGGTACA
GGTTGGGGCAACGCATTCTCTGGAGGAGGAGGGGGCTTCGGTTCTGGTTG
GGGTGGTGGAGGTGGAGGCCACGGAATTGGATTCAGCGGAggaggcggag
gcggaggcggaggcggaggAGGACATGGAACAGGATGGTAG

Coding sequence (CDS) from alignment at tig00000075_pilon:609545..611185+

>Ggra9257.t1 ID=Ggra9257.t1|Name=Ggra9257.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000075_pilon:609545..611185+ (Gracilaria gracilis GNS1m male)
ATGAAGTGTATTGCTTCTTTGTTTCTCTTTGCCTTTCTTTGTATCAAGCA
AACCGTTGCGTTGACAGATACAGTCTCTCCTGAATCACTTCCCCCGCCAT
GGGCCGACAACCGTGGCATCTGTCATCCCAGAGATCACAATTATGCAGCG
TCTAGTTCTATTTGTGATCCATCTGGTCTACTAAGCAGGAATGAAATCTC
AAAACTTGATCAAACTCTAAACCGGATGTACTCAGGCACTCGTCCTTACT
CACTTGTGAGATGTGGAGACAATTATCATTCTGATCCCTCTCATCCACCA
AGCCATGGATTTCACGTCGCAATTGCAGTTGTCAGGCGAATGCAATTTGA
TGAACAAACCCTCTCTAAGCGTGCGGAGAACTTTGCAAACATTGTCTTCG
ACAACTGGCAGTTGACGGAGAATTGCGGTGCAGGTGTTCTTCTCTTCGTT
TCAATGGATGACAGAAGAATGTATATGAAAACTGGAGATACCGCCGTCAA
GTATCTCAATGAGCATCAGATCGACGACGTATACTCAAAAATGGTACCCA
AACTCAAGAGAGATCGACTTGGAGCCGCTTTACGTGCTGGCGTTGGCAGA
ATTGGGCACTACCTCTCAAAGTACAACGGAGAGCATCCGGGCGCAAGGTC
GACGGGAGCCCGTGACAGCGGTTCGGGTTCTCGCACATCTCCGTCCTGGT
GGGACTGGGAGCTTTCCATAGTTGCGGTGATCTTCTCTGCTTTGGCCGTC
ATCGCATGCTGCAATGGTGTCGGTGGCATTGAAGCTGCCAGAAAGAGAAG
AGAGAAGAAACAAATGCTGCGCAAACTTGATACTGTTCGCGACGAGTATT
TTGGTAGCATGACTGATCACTACGCACCCTCAACTTGCCCAATCTGTCAC
GACAAGATAACCCTGTCATGGGAGCCTACTGAAACGCCTGCATCAGAAAG
TGAGGCTCTTGTGGATGGCGAGGCGCCGCCGAGAAGACGGTCTGTACGAA
CTTTGCGATGTGGTCATGCTTTCCATGATAGCTGCTTAGAAGACGACTAC
CTGACTCCAGGCGGTGGCACGCCTCAGTGTCCAGTTTGCGGAGACGCAGG
TACGGGAACGACTAGTCCTGAGCCGCTGCGAGAAACTCGTATGAGAGACG
TTTCATTCCGTTTGAATCGGTTACATGACCAATACCCACACATCCTCACT
GATGATGTGATGGCGAAATTGGAATCCGAGCCACCAAACATATGGCCAAA
CCCAATGAAAGATTCGTACCTGAAACCTATTCGGCGTCCCCGAGCACTCG
GTGAAGAGGATGAGGTACAAAGGAGCAGCGGTAATTTCTGGACTGGAGTC
GGAGGCGCACTAGCTGCAGGTGGCATTGGGGCGCTCATTGGCTCCTTCTT
TGGACAACGCGGTCGAAACGACGGCTCGTACTCCAACATTGGCGGGAACA
ATGATACCCAGGGTTTCTGGGGAGGTAGCTCTGGTGGTGGTCATGGTACA
GGTTGGGGCAACGCATTCTCTGGAGGAGGAGGGGGCTTCGGTTCTGGTTG
GGGTGGTGGAGGTGGAGGCCACGGAATTGGATTCAGCGGAggaggcggag
gcggaggcggaggcggaggAGGACATGGAACAGGATGGTAG