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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 55529.EKX55025 |
| Preferred name | TOP3A |
| PFAMs | Topoisom_bac,Toprim,zf-C4_Topoisom,zf-CCHC,zf-GRF |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K03165 |
| KEGG Pathway | ko03440,ko03460,map03440,map03460 |
| KEGG Module | M00414 |
| GOs | GO:0000002,GO:0000003,GO:0000018,GO:0000070,GO:0000278,GO:0000280,GO:0000712,GO:0000723,GO:0000724,GO:0000725,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006278,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007005,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009611,GO:0009888,GO:0009987,GO:0010833,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0031099,GO:0031323,GO:0031422,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040007,GO:0042060,GO:0042246,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044786,GO:0045132,GO:0046483,GO:0048285,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047 |
| Evalue | 2.49e-164 |
| EggNOG OGs | COG0550@1|root,KOG1956@2759|Eukaryota |
| EC | 5.99.1.2 |
| Description | DNA topoisomerase type I activity |
| COG category | L |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9175.t1.start1 | Ggra9175.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000075_pilon 299099..299101 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9175.t1.intron1 | Ggra9175.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000075_pilon 300984..301059 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9175.t1.stop1 | Ggra9175.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000075_pilon 301290..301292 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9175.t1 ID=Ggra9175.t1|Name=Ggra9175.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=706bp MALRILNVAEKPSAAKEIMNVLKGGQPAQSRHGRSRYNPIYEFNMSLQGR PSLMIFTSVTGHIKNTDFEDRYRKWGSCDPSQLLVPSQTRVEWYVSEERR PLAETLRTEARRADWLILWLDCDSEGERIAVDVADICKEAKRSLLVKRAR FSAMTRGDLFRAVNQLDVPNERVARMVATRQEIDLRAGSAYTRFLTKQLE KYALTDMDKQVISYGPCQFPTLGLVVDRWLRIQNFVSRPFWVFELVLKDC RVPLEWFRKQLFDEYSAMTLYELCAEEAQADGNVATVKRVDKRVKTRWRP LPLSTVELQKVAARSLRINSHRTMEIAEALYNKGLISYPRTETNRFSRTY DLKGLIQKHVNHTTWGSFAERLLSPSTNQDPLTFLWPRSGPQDDGAHPPI HPTQGAPLSFDSTDHARVYQYITKRFLATCSIDAVGSETRTDVLVGSAEY FTAKGLIVEQKGYLEVLYPFEQWTDKDMPLSLLEIDACIPIESFTFRRSQ TQPPPLLQEADLIALMDHHGIGTDATIAEHIRKVQDRRYVEKLAQGRFSP TEIGKALVIAHEQCQIHLARPHMRAKQENELKRILNGEIEAAQVLQSALE EYRAKLSYLKTRRAVLHTVFSRHFSEVVSTLTPDLRGDELAGEGKGIREV GVVEVDIKRVEVANGMIGQLYVKAVTEISNYHETVCWNPWTRFVQYVTIK LLKSH* back to topspliced messenger RNA >Ggra9175.t1 ID=Ggra9175.t1|Name=Ggra9175.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2118bp|location=Sequence derived from alignment at tig00000075_pilon:299099..301292+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTCTTCGGATTTTAAATGTCGCTGAGAAGCCTTCGGCTGCCAAAGA AATCATGAACGTCCTGAAAGGGGGACAGCCAGCACAAAGTCGACATGGGA GGTCTCGCTATAACCCGATTTACGAGTTCAACATGTCACTACAAGGGCGT CCATCACTAATGATATTTACGTCTGTTACCGGCCACATAAAGAACACTGA CTTTGAGGATAGGTATCGGAAATGGGGTTCATGTGATCCGTCTCAGCTAT TGGTCCCTTCACAAACCCGCGTCGAATGGTATGTATCCGAGGAGAGGCGT CCTCTTGCAGAAACCCTGAGAACGGAAGCACGCAGAGCGGACTGGTTGAT CCTATGGCTTGATTGCGACTCTGAGGGTGAGCGTATTGCAGTAGACGTTG CGGACATTTGCAAGGAAGCCAAACGATCTTTGCTCGTGAAACGCGCAAGA TTTTCGGCAATGACCAGAGGAGACCTCTTTCGAGCAGTGAATCAACTTGA TGTCCCTAACGAACGCGTTGCCCGGATGGTGGCAACCAGGCAAGAGATAG ACTTGCGGGCTGGTTCTGCATACACTCGGTTTTTGACCAAGCAGCTGGAG AAATATGCATTGACCGATATGGACAAGCAAGTCATAAGCTATGGTCCTTG CCAGTTTCCGACTCTTGGTTTAGTTGTTGACCGCTGGTTGAGAATCCAAA ACTTTGTAAGTCGGCCATTCTGGGTCTTCGAACTGGTCTTGAAGGACTGT CGAGTGCCCTTAGAATGGTTTCGCAAACAGCTTTTTGACGAGTACAGTGC TATGACTTTGTACGAGCTGTGTGCGGAGGAAGCTCAGGCCGATGGAAACG TAGCGACTGTCAAGCGAGTGGACAAGAGAGTAAAAACGCGTTGGAGACCA CTACCTTTGTCAACAGTTGAACTACAGAAAGTAGCAGCTCGTTCCCTTCG CATTAATTCTCATCGAACGATGGAAATCGCGGAAGCATTGTACAACAAAG GGCTCATAAGTTATCCAAGAACGGAGACCAATCGATTTTCTAGGACTTAT GACCTCAAGGGACTAATCCAGAAACATGTTAACCATACTACATGGGGCTC GTTTGCTGAACGCTTACTGTCACCGTCTACAAATCAGGACCCGCTGACTT TCCTTTGGCCGCGATCTGGTCCTCAGGATGATGGAGCTCATCCTCCTATC CATCCAACACAGGGGGCTCCCCTTTCATTCGACTCCACAGACCACGCACG GGTTTATCAGTATATTACGAAGCGCTTCCTTGCAACTTGCTCAATTGACG CCGTCGGGTCAGAAACGCGAACTGATGTTTTAGTTGGTAGTGCCGAGTAC TTCACGGCAAAAGGTCTTATAGTGGAACAGAAGGGTTACTTAGAAGTGCT ATACCCTTTCGAGCAATGGACTGATAAGGATATGCCCCTCTCTCTCTTGG AAATAGATGCATGTATTCCAATCGAATCGTTCACTTTCCGTAGGAGCCAG ACACAACCTCCACCTCTCCTGCAAGAGGCCGACCTCATAGCATTGATGGA CCATCATGGCATAGGTACAGATGCCACTATTGCTGAGCATATTCGAAAGG TCCAAGATCGGAGATATGTTGAGAAGCTTGCACAAGGCCGCTTTTCGCCT ACGGAAATCGGGAAAGCACTTGTGATTGCGCATGAGCAATGTCAGATACA TCTGGCACGTCCACATATGAGAGCAAAACAAGAAAACGAACTCAAGCGTA TACTGAACGGGGAAATAGAGGCAGCCCAAGTTCTGCAAAGTGCTTTAGAA GAATACCGAGCAAAGCTGAGCTATCTAAAGACCAGGAGAGCTGTATTGCA TACCGTTTTCTCCCGGCACTTTTCTGAAGTTGTCAGCACACTAACACCGG ATCTTCGAGGGGACGAACTCGCGGGAGAGGGCAAGGGAATTCGCGAGGTA GGCGTGGTAGAGGTCGACATCAAACGAGTAGAAGTGGCGAATGGAATGAT AGGTCAGCTTTATGTCAAAGCTGTGACAGAAATCTCAAACTACCACGAAA CGGTTTGCTGGAACCCATGGACAAGATTTGTCCAATATGTAACTATCAAG TTGTTGAAGTCACACTGA back to topprotein sequence of Ggra9175.t1 >Ggra9175.t1 ID=Ggra9175.t1|Name=Ggra9175.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=706bp
MALRILNVAEKPSAAKEIMNVLKGGQPAQSRHGRSRYNPIYEFNMSLQGR PSLMIFTSVTGHIKNTDFEDRYRKWGSCDPSQLLVPSQTRVEWYVSEERR PLAETLRTEARRADWLILWLDCDSEGERIAVDVADICKEAKRSLLVKRAR FSAMTRGDLFRAVNQLDVPNERVARMVATRQEIDLRAGSAYTRFLTKQLE KYALTDMDKQVISYGPCQFPTLGLVVDRWLRIQNFVSRPFWVFELVLKDC RVPLEWFRKQLFDEYSAMTLYELCAEEAQADGNVATVKRVDKRVKTRWRP LPLSTVELQKVAARSLRINSHRTMEIAEALYNKGLISYPRTETNRFSRTY DLKGLIQKHVNHTTWGSFAERLLSPSTNQDPLTFLWPRSGPQDDGAHPPI HPTQGAPLSFDSTDHARVYQYITKRFLATCSIDAVGSETRTDVLVGSAEY FTAKGLIVEQKGYLEVLYPFEQWTDKDMPLSLLEIDACIPIESFTFRRSQ TQPPPLLQEADLIALMDHHGIGTDATIAEHIRKVQDRRYVEKLAQGRFSP TEIGKALVIAHEQCQIHLARPHMRAKQENELKRILNGEIEAAQVLQSALE EYRAKLSYLKTRRAVLHTVFSRHFSEVVSTLTPDLRGDELAGEGKGIREV GVVEVDIKRVEVANGMIGQLYVKAVTEISNYHETVCWNPWTRFVQYVTIK LLKSH* back to topmRNA from alignment at tig00000075_pilon:299099..301292+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9175.t1 ID=Ggra9175.t1|Name=Ggra9175.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2194bp|location=Sequence derived from alignment at tig00000075_pilon:299099..301292+ (Gracilaria gracilis GNS1m male) ATGGCTCTTCGGATTTTAAATGTCGCTGAGAAGCCTTCGGCTGCCAAAGA
AATCATGAACGTCCTGAAAGGGGGACAGCCAGCACAAAGTCGACATGGGA
GGTCTCGCTATAACCCGATTTACGAGTTCAACATGTCACTACAAGGGCGT
CCATCACTAATGATATTTACGTCTGTTACCGGCCACATAAAGAACACTGA
CTTTGAGGATAGGTATCGGAAATGGGGTTCATGTGATCCGTCTCAGCTAT
TGGTCCCTTCACAAACCCGCGTCGAATGGTATGTATCCGAGGAGAGGCGT
CCTCTTGCAGAAACCCTGAGAACGGAAGCACGCAGAGCGGACTGGTTGAT
CCTATGGCTTGATTGCGACTCTGAGGGTGAGCGTATTGCAGTAGACGTTG
CGGACATTTGCAAGGAAGCCAAACGATCTTTGCTCGTGAAACGCGCAAGA
TTTTCGGCAATGACCAGAGGAGACCTCTTTCGAGCAGTGAATCAACTTGA
TGTCCCTAACGAACGCGTTGCCCGGATGGTGGCAACCAGGCAAGAGATAG
ACTTGCGGGCTGGTTCTGCATACACTCGGTTTTTGACCAAGCAGCTGGAG
AAATATGCATTGACCGATATGGACAAGCAAGTCATAAGCTATGGTCCTTG
CCAGTTTCCGACTCTTGGTTTAGTTGTTGACCGCTGGTTGAGAATCCAAA
ACTTTGTAAGTCGGCCATTCTGGGTCTTCGAACTGGTCTTGAAGGACTGT
CGAGTGCCCTTAGAATGGTTTCGCAAACAGCTTTTTGACGAGTACAGTGC
TATGACTTTGTACGAGCTGTGTGCGGAGGAAGCTCAGGCCGATGGAAACG
TAGCGACTGTCAAGCGAGTGGACAAGAGAGTAAAAACGCGTTGGAGACCA
CTACCTTTGTCAACAGTTGAACTACAGAAAGTAGCAGCTCGTTCCCTTCG
CATTAATTCTCATCGAACGATGGAAATCGCGGAAGCATTGTACAACAAAG
GGCTCATAAGTTATCCAAGAACGGAGACCAATCGATTTTCTAGGACTTAT
GACCTCAAGGGACTAATCCAGAAACATGTTAACCATACTACATGGGGCTC
GTTTGCTGAACGCTTACTGTCACCGTCTACAAATCAGGACCCGCTGACTT
TCCTTTGGCCGCGATCTGGTCCTCAGGATGATGGAGCTCATCCTCCTATC
CATCCAACACAGGGGGCTCCCCTTTCATTCGACTCCACAGACCACGCACG
GGTTTATCAGTATATTACGAAGCGCTTCCTTGCAACTTGCTCAATTGACG
CCGTCGGGTCAGAAACGCGAACTGATGTTTTAGTTGGTAGTGCCGAGTAC
TTCACGGCAAAAGGTCTTATAGTGGAACAGAAGGGTTACTTAGAAGTGCT
ATACCCTTTCGAGCAATGGACTGATAAGGATATGCCCCTCTCTCTCTTGG
AAATAGATGCATGTATTCCAATCGAATCGTTCACTTTCCGTAGGAGCCAG
ACACAACCTCCACCTCTCCTGCAAGAGGCCGACCTCATAGCATTGATGGA
CCATCATGGCATAGGTACAGATGCCACTATTGCTGAGCATATTCGAAAGG
TCCAAGATCGGAGATATGTTGAGAAGCTTGCACAAGGCCGCTTTTCGCCT
ACGGAAATCGGGAAAGCACTTGTGATTGCGCATGAGCAATGTCAGATACA
TCTGGCACGTCCACATATGAGAGCAAAACAAGAAAACGAACTCAAGCGTA
TACTGAACGGGGAAATAGAGGCAGCCCAAGTTCTGCAAAGTGCTTTAGAA
GAATACCGAGCAAAGCTGAGCTATCTAAAGACCAGGAGAGCTGTATTGCA
TACCGTTTTCTCCCGGCACTTTTCTGAAGTTGTCAGTTCGCCTGCAACGA
CAATTTCACCGAGTTTCTCTCGCTGTGCATGCGGGCAAACAATGTGTTTA
ATGGGTCGTAGGCACACTAACACCGGATCTTCGAGGGGACGAACTCGCGG
GAGAGGGCAAGGGAATTCGCGAGGTAGGCGTGGTAGAGGTCGACATCAAA
CGAGTAGAAGTGGCGAATGGAATGATAGGTCAGCTTTATGTCAAAGCTGT
GACAGAAATCTCAAACTACCACGAAACGGTTTGCTGGAACCCATGGACAA
GATTTGTCCAATATGTAACTATCAAGTTGTTGAAGTCACACTGA back to topCoding sequence (CDS) from alignment at tig00000075_pilon:299099..301292+ >Ggra9175.t1 ID=Ggra9175.t1|Name=Ggra9175.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2118bp|location=Sequence derived from alignment at tig00000075_pilon:299099..301292+ (Gracilaria gracilis GNS1m male) ATGGCTCTTCGGATTTTAAATGTCGCTGAGAAGCCTTCGGCTGCCAAAGA AATCATGAACGTCCTGAAAGGGGGACAGCCAGCACAAAGTCGACATGGGA GGTCTCGCTATAACCCGATTTACGAGTTCAACATGTCACTACAAGGGCGT CCATCACTAATGATATTTACGTCTGTTACCGGCCACATAAAGAACACTGA CTTTGAGGATAGGTATCGGAAATGGGGTTCATGTGATCCGTCTCAGCTAT TGGTCCCTTCACAAACCCGCGTCGAATGGTATGTATCCGAGGAGAGGCGT CCTCTTGCAGAAACCCTGAGAACGGAAGCACGCAGAGCGGACTGGTTGAT CCTATGGCTTGATTGCGACTCTGAGGGTGAGCGTATTGCAGTAGACGTTG CGGACATTTGCAAGGAAGCCAAACGATCTTTGCTCGTGAAACGCGCAAGA TTTTCGGCAATGACCAGAGGAGACCTCTTTCGAGCAGTGAATCAACTTGA TGTCCCTAACGAACGCGTTGCCCGGATGGTGGCAACCAGGCAAGAGATAG ACTTGCGGGCTGGTTCTGCATACACTCGGTTTTTGACCAAGCAGCTGGAG AAATATGCATTGACCGATATGGACAAGCAAGTCATAAGCTATGGTCCTTG CCAGTTTCCGACTCTTGGTTTAGTTGTTGACCGCTGGTTGAGAATCCAAA ACTTTGTAAGTCGGCCATTCTGGGTCTTCGAACTGGTCTTGAAGGACTGT CGAGTGCCCTTAGAATGGTTTCGCAAACAGCTTTTTGACGAGTACAGTGC TATGACTTTGTACGAGCTGTGTGCGGAGGAAGCTCAGGCCGATGGAAACG TAGCGACTGTCAAGCGAGTGGACAAGAGAGTAAAAACGCGTTGGAGACCA CTACCTTTGTCAACAGTTGAACTACAGAAAGTAGCAGCTCGTTCCCTTCG CATTAATTCTCATCGAACGATGGAAATCGCGGAAGCATTGTACAACAAAG GGCTCATAAGTTATCCAAGAACGGAGACCAATCGATTTTCTAGGACTTAT GACCTCAAGGGACTAATCCAGAAACATGTTAACCATACTACATGGGGCTC GTTTGCTGAACGCTTACTGTCACCGTCTACAAATCAGGACCCGCTGACTT TCCTTTGGCCGCGATCTGGTCCTCAGGATGATGGAGCTCATCCTCCTATC CATCCAACACAGGGGGCTCCCCTTTCATTCGACTCCACAGACCACGCACG GGTTTATCAGTATATTACGAAGCGCTTCCTTGCAACTTGCTCAATTGACG CCGTCGGGTCAGAAACGCGAACTGATGTTTTAGTTGGTAGTGCCGAGTAC TTCACGGCAAAAGGTCTTATAGTGGAACAGAAGGGTTACTTAGAAGTGCT ATACCCTTTCGAGCAATGGACTGATAAGGATATGCCCCTCTCTCTCTTGG AAATAGATGCATGTATTCCAATCGAATCGTTCACTTTCCGTAGGAGCCAG ACACAACCTCCACCTCTCCTGCAAGAGGCCGACCTCATAGCATTGATGGA CCATCATGGCATAGGTACAGATGCCACTATTGCTGAGCATATTCGAAAGG TCCAAGATCGGAGATATGTTGAGAAGCTTGCACAAGGCCGCTTTTCGCCT ACGGAAATCGGGAAAGCACTTGTGATTGCGCATGAGCAATGTCAGATACA TCTGGCACGTCCACATATGAGAGCAAAACAAGAAAACGAACTCAAGCGTA TACTGAACGGGGAAATAGAGGCAGCCCAAGTTCTGCAAAGTGCTTTAGAA GAATACCGAGCAAAGCTGAGCTATCTAAAGACCAGGAGAGCTGTATTGCA TACCGTTTTCTCCCGGCACTTTTCTGAAGTTGTCAGCACACTAACACCGG ATCTTCGAGGGGACGAACTCGCGGGAGAGGGCAAGGGAATTCGCGAGGTA GGCGTGGTAGAGGTCGACATCAAACGAGTAGAAGTGGCGAATGGAATGAT AGGTCAGCTTTATGTCAAAGCTGTGACAGAAATCTCAAACTACCACGAAA CGGTTTGCTGGAACCCATGGACAAGATTTGTCCAATATGTAACTATCAAG TTGTTGAAGTCACACTGA back to top
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