Ggra9192.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9192.t1
Unique Name	Ggra9192.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:344507..346012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	575540.Isop_1668
PFAMs	Ceramidase_alk
Max annot lvl	203682\|Planctomycetes
Evalue	1.5e-67
EggNOG OGs	COG3356@1\|root,COG3356@2\|Bacteria,2IX5S@203682\|Planctomycetes
Description	Neutral/alkaline non-lysosomal ceramidase, N-terminal
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9192	Ggra9192	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 344507..346012 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9192.t1.start1	Ggra9192.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 344507..344509 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9192.t1.CDS1	Ggra9192.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 344507..346012 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9192.t1.exon1	Ggra9192.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 344507..346012 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9192.t1.stop1	Ggra9192.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 346010..346012 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9192.t1	Ggra9192.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 344507..346012 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:344507..346012+
coding sequence from alignment at tig00000075_pilon:344507..346012+

mRNA sequence

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=502bp
MNRSGQRRLYRKQEKSMRKELFLRCKRDALFFFRNLWVRNKVLFFSTVAA
LVLCLVLLKGHSAGEENGERTWTISVSRVDITPSEKVWLSGFASRNRTAE
SIQPLDPDFPLFVRAIAIRNQTGRVKSLPLVIVSLDVIGFDQEFSATILR
DVEKEYGISRDRLRLCATHTHSGPVVGRNLAPLVPPNEVEHEKVLRYTSS
LTRAVLKAIRECIEGRQETVSVSFSEATVPLATNRRQVLEKGFHGERGTT
EDQVPVMWFAKGSRIVAGVFGVAAHATILTSSYRYSGDYAGYAAKKLEEE
TGGMWFFLAGCGGDQNIYPRGSLQLLQHHGSNLVNSILQVAHRGGTEVSS
AAVATDGYTKLYFAKRYSAYELSVRGRSKNAVERRAADLLQAEGIGSDGK
TKAVYPFPLGVWRLGDIKIVFMGGEPTVGYCHELKKAGATWIVGYCQDVM
GYVGTADVIREGGREGGERAAWYYGLPSAWSVDTERRIMNDAYSMLTSLK
L*

spliced messenger RNA

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000075_pilon:344507..346012+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGTTCTGGTCAAAGAAGACTGTATCGAAAGCAAGAAAAGTCGAT
GAGAAAGGAGCTTTTCCTTCGCTGCAAACGTGATGCACTGTTCTTCTTTC
GAAATCTGTGGGTGCGGAACAAAGTACTATTCTTTTCCACGGTAGCCGCC
TTAGTTCTATGCCTTGTACTACTTAAGGGTCATAGTGCTGGCGAAGAAAA
TGGAGAAAGAACATGGACTATAAGCGTTTCGCGAGTTGATATCACCCCAT
CAGAAAAAGTTTGGCTTTCAGGCTTTGCATCTCGCAACCGGACAGCAGAA
AGTATTCAGCCTTTAGATCCTGATTTCCCCCTCTTTGTCCGAGCCATAGC
TATTCGCAACCAAACAGGCCGCGTAAAATCGCTACCACTCGTGATTGTAT
CCCTAGACGTTATTGGCTTCGATCAAGAATTCTCTGCGACTATTTTGCGG
GACGTGGAGAAGGAGTACGGAATTTCTCGAGATCGTCTCCGATTGTGTGC
CACCCATACGCATTCCGGTCCAGTAGTGGGGAGAAATCTCGCCCCTCTTG
TTCCCCCTAATGAGGTAGAGCATGAAAAGGTGCTGAGATACACAAGCTCG
CTAACTCGAGCTGTACTAAAAGCCATAAGGGAATGCATCGAAGGTCGACA
GGAAACTGTCTCTGTATCATTTTCCGAAGCCACAGTGCCACTCGCTACAA
ATCGACGCCAGGTGTTAGAGAAGGGGTTCCATGGAGAGAGAGGAACGACG
GAGGATCAAGTTCCTGTTATGTGGTTTGCAAAAGGGAGTAGAATTGTTGC
GGGCGTATTCGGAGTGGCCGCACACGCGACAATTTTGACATCGAGCTACC
GATATTCTGGAGATTACGCTGGCTACGCGGCGAAAAAGCTGGAGGAAGAG
ACTGGAGGGATGTGGTTCTTCCTTGCTGGATGCGGTGGTGACCAAAACAT
ATACCCACGCGGAAGTCTGCAACTACTGCAACACCATGGATCAAACTTGG
TTAACAGTATTCTGCAAGTTGCTCACAGGGGAGGTACAGAGGTTAGCTCC
GCGGCTGTTGCAACCGATGGATACACAAAGCTGTACTTTGCAAAGCGATA
CAGCGCATATGAGCTTTCCGTTCGCGGGCGATCCAAAAACGCTGTAGAAA
GGCGTGCTGCGGATCTACTGCAGGCCGAGGGGATCGGTAGTGATGGAAAG
ACTAAAGCAGTTTATCCGTTCCCACTCGGTGTATGGCGACTGGGTGATAT
TAAAATTGTGTTCATGGGAGGTGAGCCGACAGTAGGGTATTGCCATGAGC
TGAAGAAAGCTGGGGCCACGTGGATAGTCGGGTATTGCCAGGATGTTATG
GGCTATGTCGGAACTGCCGACGTGATAAGAGAAGGCGGGAGGGAGGGAGG
CGAACGAGCCGCGTGGTATTATGGTCTACCATCAGCTTGGTCGGTGGATA
CAGAACGTCGCATAATGAACGACGCATATTCGATGCTTACCAGTCTTAAG
CTCTGA

protein sequence of Ggra9192.t1

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=502bp
MNRSGQRRLYRKQEKSMRKELFLRCKRDALFFFRNLWVRNKVLFFSTVAA
LVLCLVLLKGHSAGEENGERTWTISVSRVDITPSEKVWLSGFASRNRTAE
SIQPLDPDFPLFVRAIAIRNQTGRVKSLPLVIVSLDVIGFDQEFSATILR
DVEKEYGISRDRLRLCATHTHSGPVVGRNLAPLVPPNEVEHEKVLRYTSS
LTRAVLKAIRECIEGRQETVSVSFSEATVPLATNRRQVLEKGFHGERGTT
EDQVPVMWFAKGSRIVAGVFGVAAHATILTSSYRYSGDYAGYAAKKLEEE
TGGMWFFLAGCGGDQNIYPRGSLQLLQHHGSNLVNSILQVAHRGGTEVSS
AAVATDGYTKLYFAKRYSAYELSVRGRSKNAVERRAADLLQAEGIGSDGK
TKAVYPFPLGVWRLGDIKIVFMGGEPTVGYCHELKKAGATWIVGYCQDVM
GYVGTADVIREGGREGGERAAWYYGLPSAWSVDTERRIMNDAYSMLTSLK
L*

mRNA from alignment at tig00000075_pilon:344507..346012+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000075_pilon:344507..346012+ (Gracilaria gracilis GNS1m male)
ATGAACCGTTCTGGTCAAAGAAGACTGTATCGAAAGCAAGAAAAGTCGAT
GAGAAAGGAGCTTTTCCTTCGCTGCAAACGTGATGCACTGTTCTTCTTTC
GAAATCTGTGGGTGCGGAACAAAGTACTATTCTTTTCCACGGTAGCCGCC
TTAGTTCTATGCCTTGTACTACTTAAGGGTCATAGTGCTGGCGAAGAAAA
TGGAGAAAGAACATGGACTATAAGCGTTTCGCGAGTTGATATCACCCCAT
CAGAAAAAGTTTGGCTTTCAGGCTTTGCATCTCGCAACCGGACAGCAGAA
AGTATTCAGCCTTTAGATCCTGATTTCCCCCTCTTTGTCCGAGCCATAGC
TATTCGCAACCAAACAGGCCGCGTAAAATCGCTACCACTCGTGATTGTAT
CCCTAGACGTTATTGGCTTCGATCAAGAATTCTCTGCGACTATTTTGCGG
GACGTGGAGAAGGAGTACGGAATTTCTCGAGATCGTCTCCGATTGTGTGC
CACCCATACGCATTCCGGTCCAGTAGTGGGGAGAAATCTCGCCCCTCTTG
TTCCCCCTAATGAGGTAGAGCATGAAAAGGTGCTGAGATACACAAGCTCG
CTAACTCGAGCTGTACTAAAAGCCATAAGGGAATGCATCGAAGGTCGACA
GGAAACTGTCTCTGTATCATTTTCCGAAGCCACAGTGCCACTCGCTACAA
ATCGACGCCAGGTGTTAGAGAAGGGGTTCCATGGAGAGAGAGGAACGACG
GAGGATCAAGTTCCTGTTATGTGGTTTGCAAAAGGGAGTAGAATTGTTGC
GGGCGTATTCGGAGTGGCCGCACACGCGACAATTTTGACATCGAGCTACC
GATATTCTGGAGATTACGCTGGCTACGCGGCGAAAAAGCTGGAGGAAGAG
ACTGGAGGGATGTGGTTCTTCCTTGCTGGATGCGGTGGTGACCAAAACAT
ATACCCACGCGGAAGTCTGCAACTACTGCAACACCATGGATCAAACTTGG
TTAACAGTATTCTGCAAGTTGCTCACAGGGGAGGTACAGAGGTTAGCTCC
GCGGCTGTTGCAACCGATGGATACACAAAGCTGTACTTTGCAAAGCGATA
CAGCGCATATGAGCTTTCCGTTCGCGGGCGATCCAAAAACGCTGTAGAAA
GGCGTGCTGCGGATCTACTGCAGGCCGAGGGGATCGGTAGTGATGGAAAG
ACTAAAGCAGTTTATCCGTTCCCACTCGGTGTATGGCGACTGGGTGATAT
TAAAATTGTGTTCATGGGAGGTGAGCCGACAGTAGGGTATTGCCATGAGC
TGAAGAAAGCTGGGGCCACGTGGATAGTCGGGTATTGCCAGGATGTTATG
GGCTATGTCGGAACTGCCGACGTGATAAGAGAAGGCGGGAGGGAGGGAGG
CGAACGAGCCGCGTGGTATTATGGTCTACCATCAGCTTGGTCGGTGGATA
CAGAACGTCGCATAATGAACGACGCATATTCGATGCTTACCAGTCTTAAG
CTCTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:344507..346012+

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1506bp|location=Sequence derived from alignment at tig00000075_pilon:344507..346012+ (Gracilaria gracilis GNS1m male)
ATGAACCGTTCTGGTCAAAGAAGACTGTATCGAAAGCAAGAAAAGTCGAT
GAGAAAGGAGCTTTTCCTTCGCTGCAAACGTGATGCACTGTTCTTCTTTC
GAAATCTGTGGGTGCGGAACAAAGTACTATTCTTTTCCACGGTAGCCGCC
TTAGTTCTATGCCTTGTACTACTTAAGGGTCATAGTGCTGGCGAAGAAAA
TGGAGAAAGAACATGGACTATAAGCGTTTCGCGAGTTGATATCACCCCAT
CAGAAAAAGTTTGGCTTTCAGGCTTTGCATCTCGCAACCGGACAGCAGAA
AGTATTCAGCCTTTAGATCCTGATTTCCCCCTCTTTGTCCGAGCCATAGC
TATTCGCAACCAAACAGGCCGCGTAAAATCGCTACCACTCGTGATTGTAT
CCCTAGACGTTATTGGCTTCGATCAAGAATTCTCTGCGACTATTTTGCGG
GACGTGGAGAAGGAGTACGGAATTTCTCGAGATCGTCTCCGATTGTGTGC
CACCCATACGCATTCCGGTCCAGTAGTGGGGAGAAATCTCGCCCCTCTTG
TTCCCCCTAATGAGGTAGAGCATGAAAAGGTGCTGAGATACACAAGCTCG
CTAACTCGAGCTGTACTAAAAGCCATAAGGGAATGCATCGAAGGTCGACA
GGAAACTGTCTCTGTATCATTTTCCGAAGCCACAGTGCCACTCGCTACAA
ATCGACGCCAGGTGTTAGAGAAGGGGTTCCATGGAGAGAGAGGAACGACG
GAGGATCAAGTTCCTGTTATGTGGTTTGCAAAAGGGAGTAGAATTGTTGC
GGGCGTATTCGGAGTGGCCGCACACGCGACAATTTTGACATCGAGCTACC
GATATTCTGGAGATTACGCTGGCTACGCGGCGAAAAAGCTGGAGGAAGAG
ACTGGAGGGATGTGGTTCTTCCTTGCTGGATGCGGTGGTGACCAAAACAT
ATACCCACGCGGAAGTCTGCAACTACTGCAACACCATGGATCAAACTTGG
TTAACAGTATTCTGCAAGTTGCTCACAGGGGAGGTACAGAGGTTAGCTCC
GCGGCTGTTGCAACCGATGGATACACAAAGCTGTACTTTGCAAAGCGATA
CAGCGCATATGAGCTTTCCGTTCGCGGGCGATCCAAAAACGCTGTAGAAA
GGCGTGCTGCGGATCTACTGCAGGCCGAGGGGATCGGTAGTGATGGAAAG
ACTAAAGCAGTTTATCCGTTCCCACTCGGTGTATGGCGACTGGGTGATAT
TAAAATTGTGTTCATGGGAGGTGAGCCGACAGTAGGGTATTGCCATGAGC
TGAAGAAAGCTGGGGCCACGTGGATAGTCGGGTATTGCCAGGATGTTATG
GGCTATGTCGGAACTGCCGACGTGATAAGAGAAGGCGGGAGGGAGGGAGG
CGAACGAGCCGCGTGGTATTATGGTCTACCATCAGCTTGGTCGGTGGATA
CAGAACGTCGCATAATGAACGACGCATATTCGATGCTTACCAGTCTTAAG
CTCTGA