Ggra9184.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9184.t1
Unique NameGgra9184.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:326621..327469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8090.ENSORLP00000023581
Preferred nameFTSJ1
PFAMsFtsJ
Max annot lvl33208|Metazoa
KEGG koko:K02427,ko:K14864
GOsGO:0001510,GO:0002181,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008757,GO:0009020,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016427,GO:0016740,GO:0016741,GO:0019538,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0043043,GO:0043170,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052666,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue1.51e-63
EggNOG OGsCOG0293@1|root,KOG1099@2759|Eukaryota,38BSV@33154|Opisthokonta,3B9AJ@33208|Metazoa,3CTXU@33213|Bilateria,485TD@7711|Chordata,48Y2M@7742|Vertebrata,49VFG@7898|Actinopterygii
EC2.1.1.166,2.1.1.205
DescriptionMethylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs
COG categoryD
BRITEko00000,ko01000,ko03009,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9184Ggra9184Gracilaria gracilis GNS1m malegenetig00000075_pilon 326621..327469 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9184.t1.start1Ggra9184.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 326621..326623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9184.t1.CDS1Ggra9184.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 326621..327469 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9184.t1.exon1Ggra9184.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 326621..327469 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9184.t1.stop1Ggra9184.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 327467..327469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9184.t1Ggra9184.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 326621..327469 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9184.t1 ID=Ggra9184.t1|Name=Ggra9184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=283bp
MGRSNEGHTDVYYRRAKALGFRARSAFKLQQLDAQFALLSHARRVLDLCA
APGSWSQYVVQRLRQLHRLRDSRVVAVDLQPLLPLPHVVAVQADITQRAA
LRQIERAFGAADAAAAADHHGADGADGAADGAAAGAAAVHVRVDVVLCDG
APDVTGVHAIDEYVHSQLLHSALRVACHTLSPGGSFVAKVFRAQPHMTLL
RSQLALLFDRVCVVKPRSSRDSSIEAFVVCQRYTPLRTPSARAFVKLGDL
SAFDAPLSHRGRDGRVHHGDHQHAHVLEHCFD*
back to top

spliced messenger RNA

>Ggra9184.t1 ID=Ggra9184.t1|Name=Ggra9184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000075_pilon:326621..327469+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGAAGCAACGAGGGGCACACGGACGTGTACTACCGGCGCGCCAA
GGCGCTGGGCTTCCGCGCGCGCTCGGCGTTCAAGCTGCAGCAGCTGGACG
CGCAGTTCGCGCTGCTGTCGCACGCGCGTCGCGTGCTGGACCTGTGCGCC
GCGCCAGGCTCGTGGAGCCAGTACGTGGTGCAGCGTCTGCGCCAGCTGCA
CCGTCTGCGCGACAGCCGCGTGGTGGCCGTCGACCTGCAGCCGCTGCTGC
CGCTGCCGCACGTCGTCGCCGTGCAGGCCGACATCACGCAGCGCGCCGCA
CTGCGACAGATCGAGCGCGCCTTTGGTgctgctgacgccgccgccgccgc
cgaccaccacggcgccgacggtgccgacggcgcagccgatggcgcagccg
ccggcgcagccgccgTGCACGTGCGCGTGGACGTGGTGCTGTGCGACGGC
GCGCCGGACGTGACCGGCGTGCATGCAATCGACGAGTACGTGCACTCGCA
GCTGTTACACAGCGCGCTGCGCGTGGCGTGCCACACGCTGTCGCCGGGCG
GCAGCTTTGTGGCCAAGGTGTTCCGCGCGCAGCCGCACATGACGCTGCTA
CGCAGTCAGCTGGCGCTGTTGTTTGACCGCGTGTGCGTGGTCAAGCCGCG
TAGCAGCCGCGACAGCAGCATTGAGGCGTTCGTGGTGTGTCAGCGTTACA
CGCCGCTGCGCACGCCAAGCGCGCGCGCCTTTGTCAAGCTCGGCGACCTC
AGCGCGTTCGACGCGCCGCTCAGCCATCGTGGCCGTGATGGCCGCGTGCA
CCACGGCGATCATCAACACGCGCACGTACTTGAGCACTGTTTTGATTGA
back to top

protein sequence of Ggra9184.t1

>Ggra9184.t1 ID=Ggra9184.t1|Name=Ggra9184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MGRSNEGHTDVYYRRAKALGFRARSAFKLQQLDAQFALLSHARRVLDLCA
APGSWSQYVVQRLRQLHRLRDSRVVAVDLQPLLPLPHVVAVQADITQRAA
LRQIERAFGAADAAAAADHHGADGADGAADGAAAGAAAVHVRVDVVLCDG
APDVTGVHAIDEYVHSQLLHSALRVACHTLSPGGSFVAKVFRAQPHMTLL
RSQLALLFDRVCVVKPRSSRDSSIEAFVVCQRYTPLRTPSARAFVKLGDL
SAFDAPLSHRGRDGRVHHGDHQHAHVLEHCFD*
back to top

mRNA from alignment at tig00000075_pilon:326621..327469+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9184.t1 ID=Ggra9184.t1|Name=Ggra9184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000075_pilon:326621..327469+ (Gracilaria gracilis GNS1m male)
ATGGGGCGAAGCAACGAGGGGCACACGGACGTGTACTACCGGCGCGCCAA
GGCGCTGGGCTTCCGCGCGCGCTCGGCGTTCAAGCTGCAGCAGCTGGACG
CGCAGTTCGCGCTGCTGTCGCACGCGCGTCGCGTGCTGGACCTGTGCGCC
GCGCCAGGCTCGTGGAGCCAGTACGTGGTGCAGCGTCTGCGCCAGCTGCA
CCGTCTGCGCGACAGCCGCGTGGTGGCCGTCGACCTGCAGCCGCTGCTGC
CGCTGCCGCACGTCGTCGCCGTGCAGGCCGACATCACGCAGCGCGCCGCA
CTGCGACAGATCGAGCGCGCCTTTGGTgctgctgacgccgccgccgccgc
cgaccaccacggcgccgacggtgccgacggcgcagccgatggcgcagccg
ccggcgcagccgccgTGCACGTGCGCGTGGACGTGGTGCTGTGCGACGGC
GCGCCGGACGTGACCGGCGTGCATGCAATCGACGAGTACGTGCACTCGCA
GCTGTTACACAGCGCGCTGCGCGTGGCGTGCCACACGCTGTCGCCGGGCG
GCAGCTTTGTGGCCAAGGTGTTCCGCGCGCAGCCGCACATGACGCTGCTA
CGCAGTCAGCTGGCGCTGTTGTTTGACCGCGTGTGCGTGGTCAAGCCGCG
TAGCAGCCGCGACAGCAGCATTGAGGCGTTCGTGGTGTGTCAGCGTTACA
CGCCGCTGCGCACGCCAAGCGCGCGCGCCTTTGTCAAGCTCGGCGACCTC
AGCGCGTTCGACGCGCCGCTCAGCCATCGTGGCCGTGATGGCCGCGTGCA
CCACGGCGATCATCAACACGCGCACGTACTTGAGCACTGTTTTGATTGA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:326621..327469+

>Ggra9184.t1 ID=Ggra9184.t1|Name=Ggra9184.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000075_pilon:326621..327469+ (Gracilaria gracilis GNS1m male)
ATGGGGCGAAGCAACGAGGGGCACACGGACGTGTACTACCGGCGCGCCAA
GGCGCTGGGCTTCCGCGCGCGCTCGGCGTTCAAGCTGCAGCAGCTGGACG
CGCAGTTCGCGCTGCTGTCGCACGCGCGTCGCGTGCTGGACCTGTGCGCC
GCGCCAGGCTCGTGGAGCCAGTACGTGGTGCAGCGTCTGCGCCAGCTGCA
CCGTCTGCGCGACAGCCGCGTGGTGGCCGTCGACCTGCAGCCGCTGCTGC
CGCTGCCGCACGTCGTCGCCGTGCAGGCCGACATCACGCAGCGCGCCGCA
CTGCGACAGATCGAGCGCGCCTTTGGTgctgctgacgccgccgccgccgc
cgaccaccacggcgccgacggtgccgacggcgcagccgatggcgcagccg
ccggcgcagccgccgTGCACGTGCGCGTGGACGTGGTGCTGTGCGACGGC
GCGCCGGACGTGACCGGCGTGCATGCAATCGACGAGTACGTGCACTCGCA
GCTGTTACACAGCGCGCTGCGCGTGGCGTGCCACACGCTGTCGCCGGGCG
GCAGCTTTGTGGCCAAGGTGTTCCGCGCGCAGCCGCACATGACGCTGCTA
CGCAGTCAGCTGGCGCTGTTGTTTGACCGCGTGTGCGTGGTCAAGCCGCG
TAGCAGCCGCGACAGCAGCATTGAGGCGTTCGTGGTGTGTCAGCGTTACA
CGCCGCTGCGCACGCCAAGCGCGCGCGCCTTTGTCAAGCTCGGCGACCTC
AGCGCGTTCGACGCGCCGCTCAGCCATCGTGGCCGTGATGGCCGCGTGCA
CCACGGCGATCATCAACACGCGCACGTACTTGAGCACTGTTTTGATTGA
back to top