Ggra9231.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9231.t1
Unique NameGgra9231.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length816
Homology
BLAST of Ggra9231.t1 vs. uniprot
Match: A0A2V3IP51 (Nuclear pore protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP51_9FLOR)

HSP 1 Score: 1155 bits (2989), Expect = 0.000e+0
Identity = 592/867 (68.28%), Postives = 688/867 (79.35%), Query Frame = 0
Query:    1 MEDIVALSNSLRNRHTSPRAIALDAIPPLVRTLPQVHAETNRLPHLQTQNAAALRLFSNLGFEVENLRRAISRLDSTSVTEAVRVPEPPFHRPDWLAQIASEETRIGLNTELRQLSAQVFHKETRQASLRLLSKLRTLPIPEALTSLQTPQTMKTKMTQRSSFTPASPMATSGTPAHLPYLSAIQSIVQNGDAPSAPSLMHETAVEIGDDGHFVECLAIAASVARHSPPNQPPLPDVVVWGARVVLEDQFGEQIPGLPSKPRLARPAAVIPPVVDFVKRKYNEFFADNIAWAVAFYCLRIGHVRAALQVLEGSHLSPDEHAKCLGCLKRFADGCSTIREAFLTKRRGSYDEEISAQEEHAVGHDLPMTPGCLLSETDHRDLAEEYQRVAWYARKPFVRLVYVLISRLELLPYFGSATDHALPSNLGLSKHPTPGKHEQFSMALPEEDVAELLPSVEDYVWFRLWLCRTPAESQMLSVLCNSNFVTQAQIQEDISAYGSGHFDPDGEQPLVYAFVLVAIGI----------------------------------------------------LYPIEAALYLMTVKDPEVLQHSLKELVISTGEYEALLGRIALDLESDQTGSLADIITAASVPLPSGFNQKHLQIVRTEAAMYGATSAASKGDYASAAELYSLAGEPVKRVEMVTQNLADVVHKLSSSGRTLAVAEGKNALRIIEKSASLQVTDRVLESLKELISISTVFEEYWTGRYGSAWNAMRRIRILPLSTAGFSESRRPPVTVDRRFDQCVGKCLLELLKVGLHIAECALERQSVAFDAKKASEITRELYPNEPRIPDANEVKSLCIFAAILGVTDSTVNERLVKIEVLLT 815
            MEDIVALSN LRNR ++   IALDAIPPL+R LPQVHAETNRLPHLQ+ NAAALRLFSNLGFEV+ LR A+SRLDSTS TEA  VPE PF RPDWLAQ A EE+RI LNT+LRQ+SAQ FHKETR+AS RLL KLR+LPIPEALT++ TP ++KT+ T +S +TPASP  T     HLPYL+AI++I QNGDAPSAPSLMHETAV +GDDGHFVECLAI ASV+R+SPP +P  PD+VVWG RVVLEDQF E IPGLPSKPR+ARPAA+IPP+VDFVK K+ +F ADNIAWA AFYC+R+GHV+AALQVL+ +HL  +EH KC  CL+RF +G   I EAFL K R   ++     E+H     +PMTPGCL SE DHRDLAEEYQRVAW++RKPF+RLVYVLI+RLELL  FG ATD ALPSNL LSKHPTPGKHE+ S+ALPEEDVAELLPSVEDY+WFRLWLCRTPAESQMLSVL NSNFVTQAQIQEDISAYGS HFDPDGEQPLVYAFVL+A G+                                                    LYP+EAALYLM +K+ +VLQ+ L+ELV+STGEYE+LLGR+ LDLESD+ G+LA+++T++SVPLPS F QKHLQ VR EAA+YGA SAASK +YA+A+ELYSLAGEPVK +EMV  NLA+ VH+LSSSGR+LAVAE KNAL+++ +S++  + ++V ESLKEL+ IS VFEEYWTGRYG AW+A+RR+RILPL+  G SES RP   VD RFD CVGKCLLELLKVGLHIAE ALE  SVA D +KA E   E Y NEPRIPDA+EVKSLCIFA ILGVTD+TVNERL++IE+LLT
Sbjct:    1 MEDIVALSNRLRNRQSTSSVIALDAIPPLIRALPQVHAETNRLPHLQSHNAAALRLFSNLGFEVDKLRHAVSRLDSTSFTEAAHVPEAPFRRPDWLAQNALEESRICLNTDLRQISAQEFHKETREASNRLLDKLRSLPIPEALTAIHTPFSVKTRTTTKSPYTPASPATTGVASTHLPYLAAIKAIAQNGDAPSAPSLMHETAVTVGDDGHFVECLAILASVSRYSPPGEPAWPDLVVWGTRVVLEDQFAECIPGLPSKPRMARPAAIIPPIVDFVKHKHTDFLADNIAWATAFYCMRVGHVKAALQVLQDAHLPAEEHTKCFNCLERFVEGGVAIAEAFLKKSRVIQEQGPRINEQHNAECHIPMTPGCLFSEEDHRDLAEEYQRVAWHSRKPFIRLVYVLIARLELLQCFGPATD-ALPSNLELSKHPTPGKHEEHSLALPEEDVAELLPSVEDYMWFRLWLCRTPAESQMLSVLRNSNFVTQAQIQEDISAYGSAHFDPDGEQPLVYAFVLIASGMYENAFSFLFSHSDERCMQYAIHFAIVLYHLNWMKDEDVFHRQLMEFVTLFSSLYPVEAALYLMILKNAQVLQNCLRELVVSTGEYESLLGRVGLDLESDEPGALAELLTSSSVPLPSSFTQKHLQSVRAEAALYGAVSAASKNEYATASELYSLAGEPVKSIEMVMHNLAEEVHRLSSSGRSLAVAEAKNALKVMNRSSA-DIPEKVSESLKELVEISKVFEEYWTGRYGRAWDALRRLRILPLTAEGVSESHRPATVVDGRFDPCVGKCLLELLKVGLHIAEYALENDSVACDLEKAMEKASEEYKNEPRIPDASEVKSLCIFAGILGVTDTTVNERLIRIELLLT 865          
BLAST of Ggra9231.t1 vs. uniprot
Match: R7Q9V9 (Nuclear pore protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9V9_CHOCR)

HSP 1 Score: 294 bits (752), Expect = 6.730e-87
Identity = 186/508 (36.61%), Postives = 274/508 (53.94%), Query Frame = 0
Query:  366 PMTPGCLLSETDHRDLAEEYQRVAWYARKPFVRLVYVLISRLELLPYFGSATDHALPSNLGLSKHPTPGKHEQ-FSMALPEEDVAELLPSVEDYVWFRLWLCRTPAESQML--SVLCNSNFVTQAQIQEDISAYGSGHFDPDGEQPLVYAFVLVAIGI----------------------------------------------------LYPIEAALYLMTVKDPEVLQHSLKELVISTGEYEALLGRIALDLESDQTGSLADIITAASVPLPSGFNQKHLQIVRTEAAMYGATSAASKGDYASAAELYSLAGEPVKRVEMVTQNLADVVHKLSSSGRTLAVAEGKNALRIIEKSASLQVTDRVLESLKELISISTVFEEYWTGRYGSAWNAMRRIRILPLSTAGFSESRRPPVTVDRRFDQCVGKCLLELLKVGLHIAECALERQSVAF---DAKKASEITRELYPNEPRIPDANEVKSLCIFAAILGVTDSTVNERLVKIEVLLT 815
            PMTPG L +E  H  LA  Y   AW +  P++R    L+ RLE+L  +    D  L    G     +PG  +Q  S+ALP+ED+A LL SVEDY+WFRLWLCR P E +        NS+FV   +IQE++   GS HFDP+G+QPLVYAFVLV  G+                                                    L+P EAALYLMT++D + L+ SLKEL++ TGEYE L      D + +  G+L  +       LPSG     ++ +R + A  GA  AA +G++A AA+LY L+GE  +  +M  +NLA+VV K SSS R  A+AE   A ++++ S +  +   V  S+  L+  S  FEEYW GRY SAW+A+R   ++P++ A  +  R        +FD C+ +  L++L++ L+IAE ALE+  V       ++      E+  N P +P  +E+K+LC+FA  + ++D+  +E+L++IE+LL+
Sbjct:   11 PMTPGMLCTEAAHESLARLYAEEAWLSNDPYLRASIALLMRLEILHSY----DDVLEGTEGRMSSHSPGPTDQAHSLALPDEDIAGLLASVEDYLWFRLWLCRPPLEQEATLGQWTSNSDFVNLTEIQENMRVCGSKHFDPEGKQPLVYAFVLVCCGLHEEAVSYLTSHANEHLMHAAVHIAIVLYQLRWIDDDMAFHAILARYISNFSRLFPTEAALYLMTLRDRDRLRQSLKELILETGEYELLTKG---DGDGELLGALGKLPPRGK-ELPSGLTAADIENIRVDTAHVGALEAAQRGEFAIAADLYKLSGELAESADMTMRNLAEVVDKQSSSRRAPAIAE---AQKVLQSSCASNI---VATSIAALLKTSEFFEEYWKGRYQSAWDALRHTGVVPIAAADIANCRWDLAGSQAKFDHCLQENTLQVLQLALNIAEVALEQNEVQHLDSPPRRGDNRPHEIRGNPP-LPYRSEMKALCMFAGCIQISDAVTSEKLIRIEMLLS 503          
BLAST of Ggra9231.t1 vs. uniprot
Match: R7Q618 (Nuclear pore protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q618_CHOCR)

HSP 1 Score: 68.2 bits (165), Expect = 3.890e-8
Identity = 95/429 (22.14%), Postives = 148/429 (34.50%), Query Frame = 0
Query:  291 WAVAFYCLRIGHVRAALQVLEGSHLSPDEHAKCLGCLKRFADGCSTIREAFLTKRRGSYDEEISAQEEHAVGHDLPMTPGCLLSETDHRDLAEEYQRVAWYARKPFVRLVYVLISRLELLPYFGSATDHALPSNLGLSKHPTPGKHEQFSMALPEEDVAELLPSVEDYVWFRLWLCRTPAESQMLSVLCNSNFVTQAQIQEDISAYGSGHFDPDGEQPLVYAFVLVAIG------------------------ILY----------------------------------------PIEAALYLMTVKDPEVLQHSLKELVISTGEYEALLGRIALDLESDQTGSLADIITAASVPLPSGFNQKHLQIVRTEAAMYGATSAASKGDYASAAELYSLAGEPVKRVEMVTQNLADVVHKLSSSGRTLAVAE 655
            W   +YCLR G     L++L  +       A C        + C  +R +     RG+  E +  +                        L +EY         P+ R  YV++ RL+                      P  G      +ALP+ D + L  S+EDY+W RL + R   + +    L       +  IQE++  +G  HFDP G+ P  YAFVL+  G                        ILY                                           AA+YL T++D  V +  L+ LV+ T E++ LLG  A   +  + G  A ++       P G     +           A +A   GD ASA +LY +AG   K V ++   L+  +   +++ R +   E
Sbjct:    8 WPQVYYCLRAGSRETGLEILVDAL-----QAGCTDASVILIEQC--LRASLTAGERGALPEMLLER------------------------LVQEYGLSVQRGEDPYERACYVVLGRLD----------------------PAAGD----KLALPDSDYSLLFYSIEDYLWLRLSIVRLDTDERAPESLRMYELPMKC-IQEEVRRFGPAHFDPQGDTPTFYAFVLLLTGQFSAAIEYLDGGARAIAEATHVAYILYYYGILREPGGVDAGAADGANFCFDYAELLWRYVTRFSRTDATAAAVYLFTLRDGVVRKELLQRLVLETKEFDLLLGTKAFR-DDGRGGRQAGVLQEL---WPLGGRDGTVGGSWMSVVADAARAADEAGDRASAVQLYDVAGARGKVVGILIDRLSAELTSRNTASRDVTFKE 374          
The following BLAST results are available for this feature:
BLAST of Ggra9231.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IP510.000e+068.28Nuclear pore protein n=1 Tax=Gracilariopsis chorda... [more]
R7Q9V96.730e-8736.61Nuclear pore protein n=1 Tax=Chondrus crispus TaxI... [more]
R7Q6183.890e-822.14Nuclear pore protein n=1 Tax=Chondrus crispus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007231Nucleoporin interacting component Nup93/Nic96PFAMPF04097Nic96coord: 536..759
e-value: 2.2E-16
score: 59.4
IPR007231Nucleoporin interacting component Nup93/Nic96PANTHERPTHR11225NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEINcoord: 3..521
IPR007231Nucleoporin interacting component Nup93/Nic96PANTHERPTHR11225NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEINcoord: 524..757
NoneNo IPR availablePANTHERPTHR11225:SF4NUCLEAR PORE COMPLEX PROTEIN NUP93coord: 3..521
NoneNo IPR availablePANTHERPTHR11225:SF4NUCLEAR PORE COMPLEX PROTEIN NUP93coord: 524..757
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 509..531
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 532..815
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..508

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:434628..437231 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9231.t1Ggra9231.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 434628..437231 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9231.t1 ID=Ggra9231.t1|Name=Ggra9231.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=816bp
MEDIVALSNSLRNRHTSPRAIALDAIPPLVRTLPQVHAETNRLPHLQTQN
AAALRLFSNLGFEVENLRRAISRLDSTSVTEAVRVPEPPFHRPDWLAQIA
SEETRIGLNTELRQLSAQVFHKETRQASLRLLSKLRTLPIPEALTSLQTP
QTMKTKMTQRSSFTPASPMATSGTPAHLPYLSAIQSIVQNGDAPSAPSLM
HETAVEIGDDGHFVECLAIAASVARHSPPNQPPLPDVVVWGARVVLEDQF
GEQIPGLPSKPRLARPAAVIPPVVDFVKRKYNEFFADNIAWAVAFYCLRI
GHVRAALQVLEGSHLSPDEHAKCLGCLKRFADGCSTIREAFLTKRRGSYD
EEISAQEEHAVGHDLPMTPGCLLSETDHRDLAEEYQRVAWYARKPFVRLV
YVLISRLELLPYFGSATDHALPSNLGLSKHPTPGKHEQFSMALPEEDVAE
LLPSVEDYVWFRLWLCRTPAESQMLSVLCNSNFVTQAQIQEDISAYGSGH
FDPDGEQPLVYAFVLVAIGILYPIEAALYLMTVKDPEVLQHSLKELVIST
GEYEALLGRIALDLESDQTGSLADIITAASVPLPSGFNQKHLQIVRTEAA
MYGATSAASKGDYASAAELYSLAGEPVKRVEMVTQNLADVVHKLSSSGRT
LAVAEGKNALRIIEKSASLQVTDRVLESLKELISISTVFEEYWTGRYGSA
WNAMRRIRILPLSTAGFSESRRPPVTVDRRFDQCVGKCLLELLKVGLHIA
ECALERQSVAFDAKKASEITRELYPNEPRIPDANEVKSLCIFAAILGVTD
STVNERLVKIEVLLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007231Nucleoporin_int_Nup93/Nic96