Ggra9177.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9177.t1
Unique NameGgra9177.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:305539..306456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog66875.JODY01000001_gene4578
PFAMsLCM
Max annot lvl201174|Actinobacteria
Evalue2.06e-30
EggNOG OGsCOG3315@1|root,COG3315@2|Bacteria,2GKDZ@201174|Actinobacteria
DescriptionExhibits S-adenosyl-L-methionine-dependent methyltransferase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9177Ggra9177Gracilaria gracilis GNS1m malegenetig00000075_pilon 305539..306456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9177.t1.stop1Ggra9177.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 305539..305541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9177.t1.CDS1Ggra9177.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 305539..306456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9177.t1.exon1Ggra9177.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 305539..306456 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9177.t1.start1Ggra9177.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 306454..306456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9177.t1Ggra9177.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 305539..306456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9177.t1 ID=Ggra9177.t1|Name=Ggra9177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MNAEERLFTSPSQTRSLVLSGILRLISSIRTEFLGFLRPHNHVTRNGQGQ
IIVSAEQCASRRAQETERPDALFRDIYAKVLAGEAIMQRVRGKGSSSRIA
IRTRYFDDFIERNVNRPYPTQLVSLGAGMDMRPYRLECITPLVSCYEVDI
ADVIGLKEERLASVQPAPRLRAASIRRIGASLLSDQWVEELLQAGFETKT
ARTIWVLEGIVYYFSDDQVKELFHKIHALSSPGSVFCASVLKNPPRNKRG
PAFRSCIPDPERFLDDCGFELMAADFCGGPAANYGRWGAERSGGTYYVSG
KITIP*
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spliced messenger RNA

>Ggra9177.t1 ID=Ggra9177.t1|Name=Ggra9177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000075_pilon:305539..306456- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCGAAGAACGACTCTTCACTAGCCCCAGTCAGACTCGCAGTCT
TGTGCTTTCAGGAATCCTACGTCTCATAAGCTCAATTAGAACTGAATTCC
TAGGTTTCTTGAGACCCCACAACCATGTGACAAGGAATGGCCAAGGGCAA
ATCATAGTTTCAGCAGAACAATGTGCCTCACGAAGAGCACAAGAAACAGA
ACGACCGGATGCTCTCTTTCGGGACATTTATGCTAAGGTTCTGGCGGGAG
AAGCCATAATGCAGCGTGTTCGTGGAAAAGGTTCAAGCAGCAGGATTGCG
ATACGTACGAGGTATTTCGACGATTTCATAGAAAGAAACGTGAATAGACC
TTATCCAACTCAACTCGTGTCACTCGGGGCAGGTATGGACATGCGCCCAT
ATCGTCTAGAGTGCATTACGCCACTAGTGTCATGTTATGAGGTTGATATC
GCTGACGTTATTGGTTTGAAGGAAGAGCGGTTAGCTAGTGTGCAGCCTGC
CCCTCGTTTACGAGCAGCGTCAATCCGCAGAATCGGAGCTAGCCTGCTCT
CCGACCAATGGGTTGAAGAACTCTTGCAAGCTGGATTTGAGACGAAGACA
GCGAGAACTATCTGGGTTTTGGAAGGTATTGTATACTACTTTAGCGACGA
TCAGGTGAAGGAATTGTTTCACAAGATACATGCACTGAGCTCACCGGGAA
GCGTATTCTGCGCATCTGTACTGAAAAATCCACCGCGGAACAAGAGAGGA
CCTGCTTTCCGCAGTTGTATTCCTGATCCAGAGAGATTCCTCGACGATTG
TGGGTTTGAACTAATGGCCGCAGATTTCTGCGGTGGACCGGCTGCAAATT
ACGGTCGATGGGGAGCTGAGCGGTCCGGCGGAACCTACTATGTTTCGGGA
AAGATTACTATCCCATGA
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protein sequence of Ggra9177.t1

>Ggra9177.t1 ID=Ggra9177.t1|Name=Ggra9177.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MNAEERLFTSPSQTRSLVLSGILRLISSIRTEFLGFLRPHNHVTRNGQGQ
IIVSAEQCASRRAQETERPDALFRDIYAKVLAGEAIMQRVRGKGSSSRIA
IRTRYFDDFIERNVNRPYPTQLVSLGAGMDMRPYRLECITPLVSCYEVDI
ADVIGLKEERLASVQPAPRLRAASIRRIGASLLSDQWVEELLQAGFETKT
ARTIWVLEGIVYYFSDDQVKELFHKIHALSSPGSVFCASVLKNPPRNKRG
PAFRSCIPDPERFLDDCGFELMAADFCGGPAANYGRWGAERSGGTYYVSG
KITIP*
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mRNA from alignment at tig00000075_pilon:305539..306456-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9177.t1 ID=Ggra9177.t1|Name=Ggra9177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000075_pilon:305539..306456- (Gracilaria gracilis GNS1m male)
ATGAATGCCGAAGAACGACTCTTCACTAGCCCCAGTCAGACTCGCAGTCT
TGTGCTTTCAGGAATCCTACGTCTCATAAGCTCAATTAGAACTGAATTCC
TAGGTTTCTTGAGACCCCACAACCATGTGACAAGGAATGGCCAAGGGCAA
ATCATAGTTTCAGCAGAACAATGTGCCTCACGAAGAGCACAAGAAACAGA
ACGACCGGATGCTCTCTTTCGGGACATTTATGCTAAGGTTCTGGCGGGAG
AAGCCATAATGCAGCGTGTTCGTGGAAAAGGTTCAAGCAGCAGGATTGCG
ATACGTACGAGGTATTTCGACGATTTCATAGAAAGAAACGTGAATAGACC
TTATCCAACTCAACTCGTGTCACTCGGGGCAGGTATGGACATGCGCCCAT
ATCGTCTAGAGTGCATTACGCCACTAGTGTCATGTTATGAGGTTGATATC
GCTGACGTTATTGGTTTGAAGGAAGAGCGGTTAGCTAGTGTGCAGCCTGC
CCCTCGTTTACGAGCAGCGTCAATCCGCAGAATCGGAGCTAGCCTGCTCT
CCGACCAATGGGTTGAAGAACTCTTGCAAGCTGGATTTGAGACGAAGACA
GCGAGAACTATCTGGGTTTTGGAAGGTATTGTATACTACTTTAGCGACGA
TCAGGTGAAGGAATTGTTTCACAAGATACATGCACTGAGCTCACCGGGAA
GCGTATTCTGCGCATCTGTACTGAAAAATCCACCGCGGAACAAGAGAGGA
CCTGCTTTCCGCAGTTGTATTCCTGATCCAGAGAGATTCCTCGACGATTG
TGGGTTTGAACTAATGGCCGCAGATTTCTGCGGTGGACCGGCTGCAAATT
ACGGTCGATGGGGAGCTGAGCGGTCCGGCGGAACCTACTATGTTTCGGGA
AAGATTACTATCCCATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:305539..306456-

>Ggra9177.t1 ID=Ggra9177.t1|Name=Ggra9177.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000075_pilon:305539..306456- (Gracilaria gracilis GNS1m male)
ATGAATGCCGAAGAACGACTCTTCACTAGCCCCAGTCAGACTCGCAGTCT
TGTGCTTTCAGGAATCCTACGTCTCATAAGCTCAATTAGAACTGAATTCC
TAGGTTTCTTGAGACCCCACAACCATGTGACAAGGAATGGCCAAGGGCAA
ATCATAGTTTCAGCAGAACAATGTGCCTCACGAAGAGCACAAGAAACAGA
ACGACCGGATGCTCTCTTTCGGGACATTTATGCTAAGGTTCTGGCGGGAG
AAGCCATAATGCAGCGTGTTCGTGGAAAAGGTTCAAGCAGCAGGATTGCG
ATACGTACGAGGTATTTCGACGATTTCATAGAAAGAAACGTGAATAGACC
TTATCCAACTCAACTCGTGTCACTCGGGGCAGGTATGGACATGCGCCCAT
ATCGTCTAGAGTGCATTACGCCACTAGTGTCATGTTATGAGGTTGATATC
GCTGACGTTATTGGTTTGAAGGAAGAGCGGTTAGCTAGTGTGCAGCCTGC
CCCTCGTTTACGAGCAGCGTCAATCCGCAGAATCGGAGCTAGCCTGCTCT
CCGACCAATGGGTTGAAGAACTCTTGCAAGCTGGATTTGAGACGAAGACA
GCGAGAACTATCTGGGTTTTGGAAGGTATTGTATACTACTTTAGCGACGA
TCAGGTGAAGGAATTGTTTCACAAGATACATGCACTGAGCTCACCGGGAA
GCGTATTCTGCGCATCTGTACTGAAAAATCCACCGCGGAACAAGAGAGGA
CCTGCTTTCCGCAGTTGTATTCCTGATCCAGAGAGATTCCTCGACGATTG
TGGGTTTGAACTAATGGCCGCAGATTTCTGCGGTGGACCGGCTGCAAATT
ACGGTCGATGGGGAGCTGAGCGGTCCGGCGGAACCTACTATGTTTCGGGA
AAGATTACTATCCCATGA
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