Ggra6465.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6465.t1
Unique NameGgra6465.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length661
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:189281..191336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7244.FBpp0232991
PFAMsCation_ATPase,Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
Max annot lvl33208|Metazoa
KEGG koko:K01539
KEGG TC3.A.3.1
KEGG Pathwayko04022,ko04024,ko04260,ko04261,ko04911,ko04918,ko04919,ko04925,ko04960,ko04961,ko04964,ko04970,ko04971,ko04972,ko04973,ko04974,ko04976,ko04978,map04022,map04024,map04260,map04261,map04911,map04918,map04919,map04925,map04960,map04961,map04964,map04970,map04971,map04972,map04973,map04974,map04976,map04978
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005391,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006928,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0010248,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030317,GO:0034220,GO:0035725,GO:0040011,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044464,GO:0046873,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0097722,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132
Evalue6.49e-142
EggNOG OGsCOG0474@1|root,KOG0203@2759|Eukaryota,38BIP@33154|Opisthokonta,3BAR6@33208|Metazoa,3CTGX@33213|Bilateria,41TXW@6656|Arthropoda,3SITZ@50557|Insecta,4523P@7147|Diptera,45W2U@7214|Drosophilidae
EC3.6.3.9
Descriptionsodium potassium-exchanging ATPase activity. It is involved in the biological process described with sodium ion transport
COG categoryP
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6465Ggra6465Gracilaria gracilis GNS1m malegenetig00000074_pilon 189281..192754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6465.t1Ggra6465.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 189281..191336 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6465.t1.start1Ggra6465.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 189281..189283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6465.t1.CDS1Ggra6465.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 189281..191250 +
Ggra6465.t1.CDS2Ggra6465.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 191324..191336 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6465.t1.exon1Ggra6465.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 189281..191250 +
Ggra6465.t1.exon2Ggra6465.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 191324..191336 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6465.t1.intron1Ggra6465.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 191251..191323 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6465.t1.stop1Ggra6465.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 191334..191336 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6465.t1 ID=Ggra6465.t1|Name=Ggra6465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=661bp
MEATERIPRSHQATQAKGNSSNFASAIWQHRKSSDDVLVHLGTSGGLGLT
SMEAGLRLQKYGSNTLSPPPQKPLWRKVLNHFTDFFSLMLQVAAILCFIA
YVTEPDEPMHLYLGVLLYSVVIATSLFSFLQQYKSDQTLREFQHLLPPKA
TVLRDNGDTYIINASELVVGDLIQLRLGDKIPADIRLLHSNRFTVDNSSL
TGESEPIELDSEVCFSHPLEASNLAFFGCLAVEGSCDGVVIATGDNTIFG
QIAKLMAVCEAEKGPTTLQGDINHFVINISVFAVLVGILFFVVGLLQGTK
LIHNIVYSIGIIVSNIPEGLIATVTVSLTASARRMARKNVLVKQLDAVES
LGSTTVICSDKTGTLTQNRMTVAHIVCGGRVEEVSLNWKSPNQRGLDMDD
REDGVLKCLECLVYGASVCSVAVYDRTAMALNPDAEIESRKVYGDASEAG
IFRFTETIHDVEGFRRNNPLVATIPFSSKRKYMVTVHKCPDSEHTLRVVM
KGAPEKILARCKNILSADGVRELTQRDMMLIGKQVNYLAGRGERVIAYAE
MQLSPQKSVLILSQQNSAPDLDAIPTNNMCFVGLISMIDPPRFAVPFAVQ
TCKNAGIRVIMVTGDHPDTARSIAQQVGIITREVAGDNESTAKADDAVVV
TGSDLEESLR*
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spliced messenger RNA

>Ggra6465.t1 ID=Ggra6465.t1|Name=Ggra6465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00000074_pilon:189281..191336+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTACGGAACGAATTCCTCGATCGCATCAAGCCACACAAGCAAA
AGGCAACTCTAGCAACTTCGCTTCAGCCATATGGCAACATAGAAAGAGTT
CCGACGACGTCCTTGTTCATCTTGGAACAAGTGGAGGTCTCGGTTTGACT
TCAATGGAAGCTGGGTTGAGACTTCAGAAGTATGGATCAAACACACTTAG
TCCCCCTCCTCAGAAACCGTTATGGAGGAAGGTATTGAATCATTTCACCG
ATTTTTTCTCACTTATGTTGCAGGTTGCCGCCATATTGTGTTTCATTGCG
TACGTTACTGAGCCCGATGAACCTATGCATCTCTATCTGGGCGTGCTTTT
GTACTCTGTTGTCATTGCTACATCCCTCTTCTCGTTTCTCCAACAGTACA
AGTCAGATCAAACATTACGCGAGTTTCAACACTTGTTACCTCCCAAGGCT
ACAGTTTTGCGTGACAATGGGGATACATACATCATAAACGCGTCAGAACT
TGTCGTGGGTGACTTGATTCAGCTTCGACTTGGAGACAAGATCCCAGCGG
ATATTCGCCTACTTCATAGCAATAGATTCACTGTCGATAATTCGTCTTTG
ACGGGAGAAAGTGAACCTATTGAACTCGACTCTGAAGTATGCTTCTCTCA
TCCTTTGGAAGCATCGAACCTTGCATTTTTTGGTTGTCTTGCTGTTGAGG
GTTCATGTGATGGCGTTGTTATAGCAACCGGCGACAACACCATTTTCGGG
CAAATTGCCAAGTTGATGGCAGTATGTGAAGCAGAAAAAGGTCCGACAAC
ACTTCAGGGAGACATTAACCACTTTGTTATTAATATATCAGTATTCGCAG
TTCTAGTGGGCATTCTTTTCTTCGTGGTTGGGCTTCTTCAAGGAACGAAA
CTTATTCACAACATTGTTTATAGTATCGGTATCATCGTGAGCAATATTCC
CGAAGGACTCATCGCTACTGTCACTGTGTCTTTAACAGCTTCTGCGAGGC
GCATGGCTCGCAAGAATGTTCTTGTAAAGCAACTTGACGCCGTCGAATCC
CTAGGATCGACTACGGTCATATGCTCGGACAAGACTGGGACTCTAACTCA
AAACCGGATGACTGTCGCTCACATTGTTTGCGGAGGTCGTGTAGAGGAGG
TGTCTTTGAACTGGAAATCCCCCAATCAAAGAGGCTTAGATATGGACGAC
CGAGAAGATGGGGTTTTGAAATGCTTGGAATGTCTTGTATATGGTGCATC
CGTGTGCTCCGTAGCAGTATATGACCGCACTGCCATGGCCTTGAATCCGG
ATGCAGAAATCGAATCGCGGAAGGTCTACGGTGATGCATCAGAAGCAGGA
ATCTTTCGGTTTACTGAGACAATCCATGATGTTGAAGGGTTTCGGAGAAA
CAACCCTTTAGTAGCTACGATCCCCTTCAGTTCTAAGAGGAAGTATATGG
TTACTGTTCACAAATGCCCTGATTCAGAGCACACTCTCCGTGTCGTAATG
AAAGGTGCCCCAGAGAAGATTTTAGCAAGATGCAAAAACATTCTGAGTGC
GGATGGTGTTCGCGAATTAACACAGCGAGATATGATGCTCATTGGAAAGC
AAGTGAACTATCTTGCTGGAAGGGGAGAAAGGGTAATTGCATACGCAGAG
ATGCAGCTGTCACCTCAGAAGTCTGTGCTCATCTTGTCGCAACAGAACTC
AGCTCCGGATTTGGATGCAATACCCACAAATAATATGTGCTTTGTAGGTT
TGATATCCATGATCGATCCTCCTCGTTTTGCAGTTCCGTTCGCTGTCCAA
ACGTGCAAGAATGCTGGAATCAGAGTTATTATGGTTACTGGTGATCATCC
GGACACGGCACGATCAATAGCGCAACAAGTTGGAATAATCACACGTGAGG
TTGCGGGTGACAACGAATCGACAGCGAAAGCGGATGATGCAGTCGTTGTC
ACTGGTTCAGATTTGGAAGAAAGCTTGAGATAG
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protein sequence of Ggra6465.t1

>Ggra6465.t1 ID=Ggra6465.t1|Name=Ggra6465.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=661bp
MEATERIPRSHQATQAKGNSSNFASAIWQHRKSSDDVLVHLGTSGGLGLT
SMEAGLRLQKYGSNTLSPPPQKPLWRKVLNHFTDFFSLMLQVAAILCFIA
YVTEPDEPMHLYLGVLLYSVVIATSLFSFLQQYKSDQTLREFQHLLPPKA
TVLRDNGDTYIINASELVVGDLIQLRLGDKIPADIRLLHSNRFTVDNSSL
TGESEPIELDSEVCFSHPLEASNLAFFGCLAVEGSCDGVVIATGDNTIFG
QIAKLMAVCEAEKGPTTLQGDINHFVINISVFAVLVGILFFVVGLLQGTK
LIHNIVYSIGIIVSNIPEGLIATVTVSLTASARRMARKNVLVKQLDAVES
LGSTTVICSDKTGTLTQNRMTVAHIVCGGRVEEVSLNWKSPNQRGLDMDD
REDGVLKCLECLVYGASVCSVAVYDRTAMALNPDAEIESRKVYGDASEAG
IFRFTETIHDVEGFRRNNPLVATIPFSSKRKYMVTVHKCPDSEHTLRVVM
KGAPEKILARCKNILSADGVRELTQRDMMLIGKQVNYLAGRGERVIAYAE
MQLSPQKSVLILSQQNSAPDLDAIPTNNMCFVGLISMIDPPRFAVPFAVQ
TCKNAGIRVIMVTGDHPDTARSIAQQVGIITREVAGDNESTAKADDAVVV
TGSDLEESLR*
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mRNA from alignment at tig00000074_pilon:189281..191336+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6465.t1 ID=Ggra6465.t1|Name=Ggra6465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2056bp|location=Sequence derived from alignment at tig00000074_pilon:189281..191336+ (Gracilaria gracilis GNS1m male)
ATGGAAGCTACGGAACGAATTCCTCGATCGCATCAAGCCACACAAGCAAA
AGGCAACTCTAGCAACTTCGCTTCAGCCATATGGCAACATAGAAAGAGTT
CCGACGACGTCCTTGTTCATCTTGGAACAAGTGGAGGTCTCGGTTTGACT
TCAATGGAAGCTGGGTTGAGACTTCAGAAGTATGGATCAAACACACTTAG
TCCCCCTCCTCAGAAACCGTTATGGAGGAAGGTATTGAATCATTTCACCG
ATTTTTTCTCACTTATGTTGCAGGTTGCCGCCATATTGTGTTTCATTGCG
TACGTTACTGAGCCCGATGAACCTATGCATCTCTATCTGGGCGTGCTTTT
GTACTCTGTTGTCATTGCTACATCCCTCTTCTCGTTTCTCCAACAGTACA
AGTCAGATCAAACATTACGCGAGTTTCAACACTTGTTACCTCCCAAGGCT
ACAGTTTTGCGTGACAATGGGGATACATACATCATAAACGCGTCAGAACT
TGTCGTGGGTGACTTGATTCAGCTTCGACTTGGAGACAAGATCCCAGCGG
ATATTCGCCTACTTCATAGCAATAGATTCACTGTCGATAATTCGTCTTTG
ACGGGAGAAAGTGAACCTATTGAACTCGACTCTGAAGTATGCTTCTCTCA
TCCTTTGGAAGCATCGAACCTTGCATTTTTTGGTTGTCTTGCTGTTGAGG
GTTCATGTGATGGCGTTGTTATAGCAACCGGCGACAACACCATTTTCGGG
CAAATTGCCAAGTTGATGGCAGTATGTGAAGCAGAAAAAGGTCCGACAAC
ACTTCAGGGAGACATTAACCACTTTGTTATTAATATATCAGTATTCGCAG
TTCTAGTGGGCATTCTTTTCTTCGTGGTTGGGCTTCTTCAAGGAACGAAA
CTTATTCACAACATTGTTTATAGTATCGGTATCATCGTGAGCAATATTCC
CGAAGGACTCATCGCTACTGTCACTGTGTCTTTAACAGCTTCTGCGAGGC
GCATGGCTCGCAAGAATGTTCTTGTAAAGCAACTTGACGCCGTCGAATCC
CTAGGATCGACTACGGTCATATGCTCGGACAAGACTGGGACTCTAACTCA
AAACCGGATGACTGTCGCTCACATTGTTTGCGGAGGTCGTGTAGAGGAGG
TGTCTTTGAACTGGAAATCCCCCAATCAAAGAGGCTTAGATATGGACGAC
CGAGAAGATGGGGTTTTGAAATGCTTGGAATGTCTTGTATATGGTGCATC
CGTGTGCTCCGTAGCAGTATATGACCGCACTGCCATGGCCTTGAATCCGG
ATGCAGAAATCGAATCGCGGAAGGTCTACGGTGATGCATCAGAAGCAGGA
ATCTTTCGGTTTACTGAGACAATCCATGATGTTGAAGGGTTTCGGAGAAA
CAACCCTTTAGTAGCTACGATCCCCTTCAGTTCTAAGAGGAAGTATATGG
TTACTGTTCACAAATGCCCTGATTCAGAGCACACTCTCCGTGTCGTAATG
AAAGGTGCCCCAGAGAAGATTTTAGCAAGATGCAAAAACATTCTGAGTGC
GGATGGTGTTCGCGAATTAACACAGCGAGATATGATGCTCATTGGAAAGC
AAGTGAACTATCTTGCTGGAAGGGGAGAAAGGGTAATTGCATACGCAGAG
ATGCAGCTGTCACCTCAGAAGTCTGTGCTCATCTTGTCGCAACAGAACTC
AGCTCCGGATTTGGATGCAATACCCACAAATAATATGTGCTTTGTAGGTT
TGATATCCATGATCGATCCTCCTCGTTTTGCAGTTCCGTTCGCTGTCCAA
ACGTGCAAGAATGCTGGAATCAGAGTTATTATGGTTACTGGTGATCATCC
GGACACGGCACGATCAATAGCGCAACAAGTTGGAATAATCACACGTGAGG
TTGCGGGTGACAACGAATCGACAGCGAAAGCGGATGATGCAGTCGTTGTC
ACTGGTTCAGATTTGGAAGAGTTTGACGCCAGCCACTGGATTGAAACCCT
TCGCCACCCAGAAGTTGTGTTTGCTCGGACTTCACCGCAACAGAAGCTTG
AGATAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:189281..191336+

>Ggra6465.t1 ID=Ggra6465.t1|Name=Ggra6465.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1983bp|location=Sequence derived from alignment at tig00000074_pilon:189281..191336+ (Gracilaria gracilis GNS1m male)
ATGGAAGCTACGGAACGAATTCCTCGATCGCATCAAGCCACACAAGCAAA
AGGCAACTCTAGCAACTTCGCTTCAGCCATATGGCAACATAGAAAGAGTT
CCGACGACGTCCTTGTTCATCTTGGAACAAGTGGAGGTCTCGGTTTGACT
TCAATGGAAGCTGGGTTGAGACTTCAGAAGTATGGATCAAACACACTTAG
TCCCCCTCCTCAGAAACCGTTATGGAGGAAGGTATTGAATCATTTCACCG
ATTTTTTCTCACTTATGTTGCAGGTTGCCGCCATATTGTGTTTCATTGCG
TACGTTACTGAGCCCGATGAACCTATGCATCTCTATCTGGGCGTGCTTTT
GTACTCTGTTGTCATTGCTACATCCCTCTTCTCGTTTCTCCAACAGTACA
AGTCAGATCAAACATTACGCGAGTTTCAACACTTGTTACCTCCCAAGGCT
ACAGTTTTGCGTGACAATGGGGATACATACATCATAAACGCGTCAGAACT
TGTCGTGGGTGACTTGATTCAGCTTCGACTTGGAGACAAGATCCCAGCGG
ATATTCGCCTACTTCATAGCAATAGATTCACTGTCGATAATTCGTCTTTG
ACGGGAGAAAGTGAACCTATTGAACTCGACTCTGAAGTATGCTTCTCTCA
TCCTTTGGAAGCATCGAACCTTGCATTTTTTGGTTGTCTTGCTGTTGAGG
GTTCATGTGATGGCGTTGTTATAGCAACCGGCGACAACACCATTTTCGGG
CAAATTGCCAAGTTGATGGCAGTATGTGAAGCAGAAAAAGGTCCGACAAC
ACTTCAGGGAGACATTAACCACTTTGTTATTAATATATCAGTATTCGCAG
TTCTAGTGGGCATTCTTTTCTTCGTGGTTGGGCTTCTTCAAGGAACGAAA
CTTATTCACAACATTGTTTATAGTATCGGTATCATCGTGAGCAATATTCC
CGAAGGACTCATCGCTACTGTCACTGTGTCTTTAACAGCTTCTGCGAGGC
GCATGGCTCGCAAGAATGTTCTTGTAAAGCAACTTGACGCCGTCGAATCC
CTAGGATCGACTACGGTCATATGCTCGGACAAGACTGGGACTCTAACTCA
AAACCGGATGACTGTCGCTCACATTGTTTGCGGAGGTCGTGTAGAGGAGG
TGTCTTTGAACTGGAAATCCCCCAATCAAAGAGGCTTAGATATGGACGAC
CGAGAAGATGGGGTTTTGAAATGCTTGGAATGTCTTGTATATGGTGCATC
CGTGTGCTCCGTAGCAGTATATGACCGCACTGCCATGGCCTTGAATCCGG
ATGCAGAAATCGAATCGCGGAAGGTCTACGGTGATGCATCAGAAGCAGGA
ATCTTTCGGTTTACTGAGACAATCCATGATGTTGAAGGGTTTCGGAGAAA
CAACCCTTTAGTAGCTACGATCCCCTTCAGTTCTAAGAGGAAGTATATGG
TTACTGTTCACAAATGCCCTGATTCAGAGCACACTCTCCGTGTCGTAATG
AAAGGTGCCCCAGAGAAGATTTTAGCAAGATGCAAAAACATTCTGAGTGC
GGATGGTGTTCGCGAATTAACACAGCGAGATATGATGCTCATTGGAAAGC
AAGTGAACTATCTTGCTGGAAGGGGAGAAAGGGTAATTGCATACGCAGAG
ATGCAGCTGTCACCTCAGAAGTCTGTGCTCATCTTGTCGCAACAGAACTC
AGCTCCGGATTTGGATGCAATACCCACAAATAATATGTGCTTTGTAGGTT
TGATATCCATGATCGATCCTCCTCGTTTTGCAGTTCCGTTCGCTGTCCAA
ACGTGCAAGAATGCTGGAATCAGAGTTATTATGGTTACTGGTGATCATCC
GGACACGGCACGATCAATAGCGCAACAAGTTGGAATAATCACACGTGAGG
TTGCGGGTGACAACGAATCGACAGCGAAAGCGGATGATGCAGTCGTTGTC
ACTGGTTCAGATTTGGAAGAAAGCTTGAGATAG
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