Ggra6460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6460.t1
Unique Name	Ggra6460.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:179850..180719 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML032CT
Preferred name	BASS2
PFAMs	SBF
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03453
KEGG TC	2.A.28
GOs	GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006848,GO:0006849,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0015075,GO:0015318,GO:0015711,GO:0015718,GO:0015849,GO:0022857,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050833,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0098656,GO:1901475,GO:1903825,GO:1905039
Evalue	1.36e-115
EggNOG OGs	COG0385@1\|root,KOG2718@2759\|Eukaryota
Description	bile acid:sodium symporter activity
COG category	J
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6460	Ggra6460	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 179850..180719 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6460.t1.start1	Ggra6460.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 179850..179852 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6460.t1.CDS1	Ggra6460.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 179850..180719 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6460.t1.exon1	Ggra6460.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 179850..180719 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6460.t1.stop1	Ggra6460.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 180717..180719 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6460.t1	Ggra6460.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 179850..180719 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:179850..180719+
coding sequence from alignment at tig00000074_pilon:179850..180719+

mRNA sequence

>Ggra6460.t1 ID=Ggra6460.t1|Name=Ggra6460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MGITLSVDDFKRVMRRFGAVTIGFIGCYLVMPLLALLLANLFSLPPNLTA
GLILVGAVNGGQASNLCTYIANGNVALSVMMTTSTTLGAIIMTPLISKWL
IGAVIPVNAVGIAWSTIQVVLFPIALGMVLNKFCNRFVRAVLPFSPVLGV
AATCLLVGSSVAQCATPIVQAGLSLQIPILLLHLLGGICGYLSVAIAGYG
EVVRRTTAIETSMKSSAFGFLLATLHFGEYMVRVPAAVSVVWMALVGSTL
AVIWRYIPVGNKDALDRAEGKGLFNKLLKPTVADESGSE*

spliced messenger RNA

>Ggra6460.t1 ID=Ggra6460.t1|Name=Ggra6460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000074_pilon:179850..180719+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATCACCCTTTCAGTAGATGATTTCAAACGAGTCATGCGTCGATT
CGGAGCCGTGACTATCGGTTTCATTGGTTGTTATCTCGTAATGCCACTCC
TGGCTCTCTTGCTCGCCAATCTCTTCAGCCTTCCCCCGAATCTTACTGCA
GGACTTATCTTGGTTGGTGCTGTGAATGGCGGACAAGCATCCAACCTGTG
TACTTACATTGCAAATGGCAATGTGGCACTTTCGGTGATGATGACTACAA
GTACTACGTTAGGCGCTATTATCATGACTCCCCTCATAAGCAAGTGGTTG
ATTGGAGCGGTCATTCCCGTCAACGCGGTAGGAATCGCTTGGTCAACGAT
TCAAGTGGTTCTCTTTCCAATTGCCTTGGGTATGGTTTTGAACAAGTTTT
GTAACCGCTTTGTTCGGGCGGTGTTACCGTTCTCTCCAGTTCTGGGAGTC
GCAGCAACGTGCCTTCTTGTGGGGTCTTCAGTAGCTCAATGCGCGACACC
AATTGTACAGGCCGGTTTGAGTTTGCAAATACCGATTCTACTCCTACATT
TGCTTGGTGGAATCTGTGGGTATCTTTCGGTAGCTATAGCCGGCTATGGA
GAAGTAGTGAGACGCACGACGGCCATTGAAACATCAATGAAAAGCAGTGC
GTTTGGATTCCTGCTTGCAACGCTTCATTTCGGGGAATATATGGTCCGCG
TTCCTGCAGCCGTTTCTGTTGTTTGGATGGCCTTGGTTGGTTCCACTTTG
GCAGTTATTTGGCGCTATATCCCAGTTGGAAACAAGGATGCACTTGATCG
CGCGGAAGGCAAAGGTCTCTTCAACAAGCTTCTCAAACCAACGGTAGCGG
ACGAGAGCGGTTCAGAATAA

protein sequence of Ggra6460.t1

>Ggra6460.t1 ID=Ggra6460.t1|Name=Ggra6460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MGITLSVDDFKRVMRRFGAVTIGFIGCYLVMPLLALLLANLFSLPPNLTA
GLILVGAVNGGQASNLCTYIANGNVALSVMMTTSTTLGAIIMTPLISKWL
IGAVIPVNAVGIAWSTIQVVLFPIALGMVLNKFCNRFVRAVLPFSPVLGV
AATCLLVGSSVAQCATPIVQAGLSLQIPILLLHLLGGICGYLSVAIAGYG
EVVRRTTAIETSMKSSAFGFLLATLHFGEYMVRVPAAVSVVWMALVGSTL
AVIWRYIPVGNKDALDRAEGKGLFNKLLKPTVADESGSE*

mRNA from alignment at tig00000074_pilon:179850..180719+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6460.t1 ID=Ggra6460.t1|Name=Ggra6460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000074_pilon:179850..180719+ (Gracilaria gracilis GNS1m male)
ATGGGCATCACCCTTTCAGTAGATGATTTCAAACGAGTCATGCGTCGATT
CGGAGCCGTGACTATCGGTTTCATTGGTTGTTATCTCGTAATGCCACTCC
TGGCTCTCTTGCTCGCCAATCTCTTCAGCCTTCCCCCGAATCTTACTGCA
GGACTTATCTTGGTTGGTGCTGTGAATGGCGGACAAGCATCCAACCTGTG
TACTTACATTGCAAATGGCAATGTGGCACTTTCGGTGATGATGACTACAA
GTACTACGTTAGGCGCTATTATCATGACTCCCCTCATAAGCAAGTGGTTG
ATTGGAGCGGTCATTCCCGTCAACGCGGTAGGAATCGCTTGGTCAACGAT
TCAAGTGGTTCTCTTTCCAATTGCCTTGGGTATGGTTTTGAACAAGTTTT
GTAACCGCTTTGTTCGGGCGGTGTTACCGTTCTCTCCAGTTCTGGGAGTC
GCAGCAACGTGCCTTCTTGTGGGGTCTTCAGTAGCTCAATGCGCGACACC
AATTGTACAGGCCGGTTTGAGTTTGCAAATACCGATTCTACTCCTACATT
TGCTTGGTGGAATCTGTGGGTATCTTTCGGTAGCTATAGCCGGCTATGGA
GAAGTAGTGAGACGCACGACGGCCATTGAAACATCAATGAAAAGCAGTGC
GTTTGGATTCCTGCTTGCAACGCTTCATTTCGGGGAATATATGGTCCGCG
TTCCTGCAGCCGTTTCTGTTGTTTGGATGGCCTTGGTTGGTTCCACTTTG
GCAGTTATTTGGCGCTATATCCCAGTTGGAAACAAGGATGCACTTGATCG
CGCGGAAGGCAAAGGTCTCTTCAACAAGCTTCTCAAACCAACGGTAGCGG
ACGAGAGCGGTTCAGAATAA

Coding sequence (CDS) from alignment at tig00000074_pilon:179850..180719+

>Ggra6460.t1 ID=Ggra6460.t1|Name=Ggra6460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000074_pilon:179850..180719+ (Gracilaria gracilis GNS1m male)
ATGGGCATCACCCTTTCAGTAGATGATTTCAAACGAGTCATGCGTCGATT
CGGAGCCGTGACTATCGGTTTCATTGGTTGTTATCTCGTAATGCCACTCC
TGGCTCTCTTGCTCGCCAATCTCTTCAGCCTTCCCCCGAATCTTACTGCA
GGACTTATCTTGGTTGGTGCTGTGAATGGCGGACAAGCATCCAACCTGTG
TACTTACATTGCAAATGGCAATGTGGCACTTTCGGTGATGATGACTACAA
GTACTACGTTAGGCGCTATTATCATGACTCCCCTCATAAGCAAGTGGTTG
ATTGGAGCGGTCATTCCCGTCAACGCGGTAGGAATCGCTTGGTCAACGAT
TCAAGTGGTTCTCTTTCCAATTGCCTTGGGTATGGTTTTGAACAAGTTTT
GTAACCGCTTTGTTCGGGCGGTGTTACCGTTCTCTCCAGTTCTGGGAGTC
GCAGCAACGTGCCTTCTTGTGGGGTCTTCAGTAGCTCAATGCGCGACACC
AATTGTACAGGCCGGTTTGAGTTTGCAAATACCGATTCTACTCCTACATT
TGCTTGGTGGAATCTGTGGGTATCTTTCGGTAGCTATAGCCGGCTATGGA
GAAGTAGTGAGACGCACGACGGCCATTGAAACATCAATGAAAAGCAGTGC
GTTTGGATTCCTGCTTGCAACGCTTCATTTCGGGGAATATATGGTCCGCG
TTCCTGCAGCCGTTTCTGTTGTTTGGATGGCCTTGGTTGGTTCCACTTTG
GCAGTTATTTGGCGCTATATCCCAGTTGGAAACAAGGATGCACTTGATCG
CGCGGAAGGCAAAGGTCTCTTCAACAAGCTTCTCAAACCAACGGTAGCGG
ACGAGAGCGGTTCAGAATAA