Ggra6484.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6484.t1
Unique NameGgra6484.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length628
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:299145..301028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004993982.1
Preferred nameACSBG1
PFAMsAMP-binding
Max annot lvl33154|Opisthokonta
KEGG rclassRC00004,RC00014
KEGG koko:K15013
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko03320,ko04920,map00061,map00071,map01100,map01212,map03320,map04920
KEGG ModuleM00086
GOsGO:0000003,GO:0000038,GO:0001552,GO:0001676,GO:0003006,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007272,GO:0007275,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0012505,GO:0014070,GO:0015645,GO:0016020,GO:0016042,GO:0016053,GO:0016054,GO:0016289,GO:0016405,GO:0016787,GO:0016788,GO:0016790,GO:0016874,GO:0016877,GO:0016878,GO:0018130,GO:0019395,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0022414,GO:0030258,GO:0031957,GO:0031960,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034440,GO:0034641,GO:0034654,GO:0034976,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042221,GO:0042552,GO:0042592,GO:0042749,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045187,GO:0045938,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046545,GO:0046660,GO:0046949,GO:0047617,GO:0048513,GO:0048518,GO:0048520,GO:0048545,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051716,GO:0055086,GO:0055114,GO:0060249,GO:0061458,GO:0065007,GO:0065008,GO:0070050,GO:0071616,GO:0071704,GO:0072329,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576
Evalue3.99e-171
EggNOG OGsCOG1022@1|root,KOG1256@2759|Eukaryota,39DMK@33154|Opisthokonta
EC6.2.1.3
Descriptionacyl-CoA synthetase bubblegum family member
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6484Ggra6484Gracilaria gracilis GNS1m malegenetig00000074_pilon 299145..301028 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6484.t1.stop1Ggra6484.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 299145..299147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6484.t1.CDS1Ggra6484.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 299145..301028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6484.t1.exon1Ggra6484.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 299145..301028 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6484.t1.start1Ggra6484.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 301026..301028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6484.t1Ggra6484.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 299145..301028 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6484.t1 ID=Ggra6484.t1|Name=Ggra6484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=628bp
MAGVTWISRVTEKRPIIGLDAGVPKRTFPQAIAHAVQQRGHITQYFSTDG
TPYTLADFYAIARRLAKALIHLELQPFDGVSILGFNSLQWFAADVGATLA
ACLSAGIYTTNKPAIVAYIIQHSRSRVVFVDDELALDKVLSVLDQCPQLK
AVVIWGNTDLSKYAEHANLVHTFDQFLALSEHVSDAELDARAAAQQPEDV
CKLIYTSGTTGPPKAVMISHDNVVFTALVTGRLANATPDDHLVSFLPCSH
IAANMVDIAGSILMGFKITFGQPDALKGSLVNTLKKVRPTLFLAVPRVYE
KIQEKLLQIGANNGPVKRAISSWAKSIGTAASHARDAGDELMPWGYKLAR
LLVFDNVKKALGLDRCRLLFNAAAPLQKATDSYFKSLDLRILDIYGMSEG
TGPMTANVNGYKAGTSGKVLAGVEVKVINQDETGEGELCFRGRNIFVGYL
DNPEESAKTIDDDGFIHSGDLGRVDEDGFVSITGRVKELIVTAGGENVAP
ALTEGSLREELDAISRVFVVGDKKKFISCLLIPYIDEQSNLIGPATKVNP
DVKTAEEALSDPAWLKYINEGVERANAHAISNAAKVRKFRLLPKDFTVDG
GELTPTMKVKRKIVVQKYETIIEEMYA*
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spliced messenger RNA

>Ggra6484.t1 ID=Ggra6484.t1|Name=Ggra6484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000074_pilon:299145..301028- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCGTTACCTGGATATCCAGAGTGACCGAGAAGCGCCCCATCAT
CGGCTTGGACGCCGGCGTGCCCAAGCGCACCTTCCCGCAGGCGATTGCGC
ACGCCGTGCAGCAACGCGGCCACATCACGCAGTACTTTTCCACCGACGGC
ACGCCGTACACGCTGGCCGACTTTTACGCCATCGCGCGCCGGCTGGCAAA
GGCGCTCATCCACCTCGAGTTGCAGCCGTTCGACGGCGTCAGTATTCTGG
GCTTCAACTCGCTGCAGTGGTTCGCCGCCGACGTGGGCGCCACGCTGGCT
GCTTGTTTGTCGGCCGGCATTTATACTACCAATAAGCCCGCCATCGTCGC
GTACATCATCCAGCATAGTCGCAGTCGTGTCGTGTTTGTGGACGATGAGC
TCGCCTTGGACAAGGTCTTGTCCGTCCTTGATCAATGCCCGCAGCTTAAA
GCCGTCGTCATCTGGGGGAACACCGATCTGTCCAAGTATGCGGAGCACGC
CAATCTCGTTCATACTTTTGACCAGTTTCTCGCCTTGTCCGAGCACGTGT
CGGACGCTGAGCTCGATGCGAGGGCTGCCGCGCAGCAGCCTGAGGACGTG
TGCAAGCTCATTTATACCAGTGGCACCACGGGGCCACCAAAGGCCGTCAT
GATCTCGCATGACAACGTCGTCTTCACAGCGCTCGTCACGGGCAGACTGG
CCAACGCCACCCCCGATGACCATCTGGTGTCGTTCCTGCCGTGCTCGCAT
ATCGCCGCGAACATGGTCGATATTGCCGGCTCCATTCTCATGGGCTTCAA
GATCACGTTTGGACAACCTGATGCGTTAAAGGGTTCGCTCGTGAATACTT
TGAAGAAAGTTCGCCCCACGCTTTTCTTGGCCGTGCCTCGCGTGTACGAG
AAGATTCAGGAAAAGCTGTTGCAGATCGGAGCGAACAATGGCCCGGTTAA
GCGTGCCATCTCGTCCTGGGCAAAGTCGATTGGAACCGCTGCTTCGCACG
CTCGTGACGCGGGCGATGAGCTCATGCCGTGGGGATACAAGTTGGCCCGA
TTGCTCGTGTTCGATAACGTCAAAAAGGCGCTCGGGCTCGATCGCTGCAG
ACTCCTTTTTAACGCCGCCGCGCCGTTGCAAAAGGCTACCGATTCCTACT
TCAAGAGCCTGGACCTGCGTATTCTGGACATTTATGGAATGAGTGAAGGA
ACCGGGCCCATGACTGCTAATGTTAACGGCTACAAGGCTGGTACTTCTGG
TAAGGTGTTGGCTGGTGTTGAGGTCAAGGTCATCAACCAGGATGAGACTG
GAGAGGGGGAACTGTGCTTCCGAGGACGCAATATTTTTGTGGGCTATCTA
GACAACCCGGAAGAATCGGCCAAAACCATTGATGATGATGGCTTCATTCA
TTCTGGTGACCTTGGGCGCGTTGATGAGGACGGTTTTGTCTCGATCACAG
GTCGGGTGAAGGAACTTATCGTGACTGCTGGGGGCGAAAATGTTGCGCCT
GCGCTCACCGAGGGCTCACTGAGGGAAGAGCTCGACGCCATTTCTCGTGT
GTTTGTCGTTGGCGACAAGAAAAAGTTCATCTCGTGCTTGCTCATTCCAT
ACATAGATGAGCAGAGCAATTTGATCGGGCCCGCTACAAAGGTGAATCCT
GACGTGAAGACGGCGGAGGAGGCACTAAGTGACCCCGCTTGGTTGAAGTA
TATCAACGAGGGTGTTGAACGGGCCAACGCTCACGCTATCAGTAACGCGG
CAAAGGTTCGAAAGTTCCGCTTGCTTCCGAAAGACTTTACAGTTGATGGT
GGGGAACTCACTCCCACCATGAAGGTGAAGAGAAAGATTGTCGTGCAAAA
GTATGAAACCATTATTGAAGAAATGTACGCGTAG
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protein sequence of Ggra6484.t1

>Ggra6484.t1 ID=Ggra6484.t1|Name=Ggra6484.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=628bp
MAGVTWISRVTEKRPIIGLDAGVPKRTFPQAIAHAVQQRGHITQYFSTDG
TPYTLADFYAIARRLAKALIHLELQPFDGVSILGFNSLQWFAADVGATLA
ACLSAGIYTTNKPAIVAYIIQHSRSRVVFVDDELALDKVLSVLDQCPQLK
AVVIWGNTDLSKYAEHANLVHTFDQFLALSEHVSDAELDARAAAQQPEDV
CKLIYTSGTTGPPKAVMISHDNVVFTALVTGRLANATPDDHLVSFLPCSH
IAANMVDIAGSILMGFKITFGQPDALKGSLVNTLKKVRPTLFLAVPRVYE
KIQEKLLQIGANNGPVKRAISSWAKSIGTAASHARDAGDELMPWGYKLAR
LLVFDNVKKALGLDRCRLLFNAAAPLQKATDSYFKSLDLRILDIYGMSEG
TGPMTANVNGYKAGTSGKVLAGVEVKVINQDETGEGELCFRGRNIFVGYL
DNPEESAKTIDDDGFIHSGDLGRVDEDGFVSITGRVKELIVTAGGENVAP
ALTEGSLREELDAISRVFVVGDKKKFISCLLIPYIDEQSNLIGPATKVNP
DVKTAEEALSDPAWLKYINEGVERANAHAISNAAKVRKFRLLPKDFTVDG
GELTPTMKVKRKIVVQKYETIIEEMYA*
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mRNA from alignment at tig00000074_pilon:299145..301028-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6484.t1 ID=Ggra6484.t1|Name=Ggra6484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000074_pilon:299145..301028- (Gracilaria gracilis GNS1m male)
ATGGCCGGCGTTACCTGGATATCCAGAGTGACCGAGAAGCGCCCCATCAT
CGGCTTGGACGCCGGCGTGCCCAAGCGCACCTTCCCGCAGGCGATTGCGC
ACGCCGTGCAGCAACGCGGCCACATCACGCAGTACTTTTCCACCGACGGC
ACGCCGTACACGCTGGCCGACTTTTACGCCATCGCGCGCCGGCTGGCAAA
GGCGCTCATCCACCTCGAGTTGCAGCCGTTCGACGGCGTCAGTATTCTGG
GCTTCAACTCGCTGCAGTGGTTCGCCGCCGACGTGGGCGCCACGCTGGCT
GCTTGTTTGTCGGCCGGCATTTATACTACCAATAAGCCCGCCATCGTCGC
GTACATCATCCAGCATAGTCGCAGTCGTGTCGTGTTTGTGGACGATGAGC
TCGCCTTGGACAAGGTCTTGTCCGTCCTTGATCAATGCCCGCAGCTTAAA
GCCGTCGTCATCTGGGGGAACACCGATCTGTCCAAGTATGCGGAGCACGC
CAATCTCGTTCATACTTTTGACCAGTTTCTCGCCTTGTCCGAGCACGTGT
CGGACGCTGAGCTCGATGCGAGGGCTGCCGCGCAGCAGCCTGAGGACGTG
TGCAAGCTCATTTATACCAGTGGCACCACGGGGCCACCAAAGGCCGTCAT
GATCTCGCATGACAACGTCGTCTTCACAGCGCTCGTCACGGGCAGACTGG
CCAACGCCACCCCCGATGACCATCTGGTGTCGTTCCTGCCGTGCTCGCAT
ATCGCCGCGAACATGGTCGATATTGCCGGCTCCATTCTCATGGGCTTCAA
GATCACGTTTGGACAACCTGATGCGTTAAAGGGTTCGCTCGTGAATACTT
TGAAGAAAGTTCGCCCCACGCTTTTCTTGGCCGTGCCTCGCGTGTACGAG
AAGATTCAGGAAAAGCTGTTGCAGATCGGAGCGAACAATGGCCCGGTTAA
GCGTGCCATCTCGTCCTGGGCAAAGTCGATTGGAACCGCTGCTTCGCACG
CTCGTGACGCGGGCGATGAGCTCATGCCGTGGGGATACAAGTTGGCCCGA
TTGCTCGTGTTCGATAACGTCAAAAAGGCGCTCGGGCTCGATCGCTGCAG
ACTCCTTTTTAACGCCGCCGCGCCGTTGCAAAAGGCTACCGATTCCTACT
TCAAGAGCCTGGACCTGCGTATTCTGGACATTTATGGAATGAGTGAAGGA
ACCGGGCCCATGACTGCTAATGTTAACGGCTACAAGGCTGGTACTTCTGG
TAAGGTGTTGGCTGGTGTTGAGGTCAAGGTCATCAACCAGGATGAGACTG
GAGAGGGGGAACTGTGCTTCCGAGGACGCAATATTTTTGTGGGCTATCTA
GACAACCCGGAAGAATCGGCCAAAACCATTGATGATGATGGCTTCATTCA
TTCTGGTGACCTTGGGCGCGTTGATGAGGACGGTTTTGTCTCGATCACAG
GTCGGGTGAAGGAACTTATCGTGACTGCTGGGGGCGAAAATGTTGCGCCT
GCGCTCACCGAGGGCTCACTGAGGGAAGAGCTCGACGCCATTTCTCGTGT
GTTTGTCGTTGGCGACAAGAAAAAGTTCATCTCGTGCTTGCTCATTCCAT
ACATAGATGAGCAGAGCAATTTGATCGGGCCCGCTACAAAGGTGAATCCT
GACGTGAAGACGGCGGAGGAGGCACTAAGTGACCCCGCTTGGTTGAAGTA
TATCAACGAGGGTGTTGAACGGGCCAACGCTCACGCTATCAGTAACGCGG
CAAAGGTTCGAAAGTTCCGCTTGCTTCCGAAAGACTTTACAGTTGATGGT
GGGGAACTCACTCCCACCATGAAGGTGAAGAGAAAGATTGTCGTGCAAAA
GTATGAAACCATTATTGAAGAAATGTACGCGTAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:299145..301028-

>Ggra6484.t1 ID=Ggra6484.t1|Name=Ggra6484.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1884bp|location=Sequence derived from alignment at tig00000074_pilon:299145..301028- (Gracilaria gracilis GNS1m male)
ATGGCCGGCGTTACCTGGATATCCAGAGTGACCGAGAAGCGCCCCATCAT
CGGCTTGGACGCCGGCGTGCCCAAGCGCACCTTCCCGCAGGCGATTGCGC
ACGCCGTGCAGCAACGCGGCCACATCACGCAGTACTTTTCCACCGACGGC
ACGCCGTACACGCTGGCCGACTTTTACGCCATCGCGCGCCGGCTGGCAAA
GGCGCTCATCCACCTCGAGTTGCAGCCGTTCGACGGCGTCAGTATTCTGG
GCTTCAACTCGCTGCAGTGGTTCGCCGCCGACGTGGGCGCCACGCTGGCT
GCTTGTTTGTCGGCCGGCATTTATACTACCAATAAGCCCGCCATCGTCGC
GTACATCATCCAGCATAGTCGCAGTCGTGTCGTGTTTGTGGACGATGAGC
TCGCCTTGGACAAGGTCTTGTCCGTCCTTGATCAATGCCCGCAGCTTAAA
GCCGTCGTCATCTGGGGGAACACCGATCTGTCCAAGTATGCGGAGCACGC
CAATCTCGTTCATACTTTTGACCAGTTTCTCGCCTTGTCCGAGCACGTGT
CGGACGCTGAGCTCGATGCGAGGGCTGCCGCGCAGCAGCCTGAGGACGTG
TGCAAGCTCATTTATACCAGTGGCACCACGGGGCCACCAAAGGCCGTCAT
GATCTCGCATGACAACGTCGTCTTCACAGCGCTCGTCACGGGCAGACTGG
CCAACGCCACCCCCGATGACCATCTGGTGTCGTTCCTGCCGTGCTCGCAT
ATCGCCGCGAACATGGTCGATATTGCCGGCTCCATTCTCATGGGCTTCAA
GATCACGTTTGGACAACCTGATGCGTTAAAGGGTTCGCTCGTGAATACTT
TGAAGAAAGTTCGCCCCACGCTTTTCTTGGCCGTGCCTCGCGTGTACGAG
AAGATTCAGGAAAAGCTGTTGCAGATCGGAGCGAACAATGGCCCGGTTAA
GCGTGCCATCTCGTCCTGGGCAAAGTCGATTGGAACCGCTGCTTCGCACG
CTCGTGACGCGGGCGATGAGCTCATGCCGTGGGGATACAAGTTGGCCCGA
TTGCTCGTGTTCGATAACGTCAAAAAGGCGCTCGGGCTCGATCGCTGCAG
ACTCCTTTTTAACGCCGCCGCGCCGTTGCAAAAGGCTACCGATTCCTACT
TCAAGAGCCTGGACCTGCGTATTCTGGACATTTATGGAATGAGTGAAGGA
ACCGGGCCCATGACTGCTAATGTTAACGGCTACAAGGCTGGTACTTCTGG
TAAGGTGTTGGCTGGTGTTGAGGTCAAGGTCATCAACCAGGATGAGACTG
GAGAGGGGGAACTGTGCTTCCGAGGACGCAATATTTTTGTGGGCTATCTA
GACAACCCGGAAGAATCGGCCAAAACCATTGATGATGATGGCTTCATTCA
TTCTGGTGACCTTGGGCGCGTTGATGAGGACGGTTTTGTCTCGATCACAG
GTCGGGTGAAGGAACTTATCGTGACTGCTGGGGGCGAAAATGTTGCGCCT
GCGCTCACCGAGGGCTCACTGAGGGAAGAGCTCGACGCCATTTCTCGTGT
GTTTGTCGTTGGCGACAAGAAAAAGTTCATCTCGTGCTTGCTCATTCCAT
ACATAGATGAGCAGAGCAATTTGATCGGGCCCGCTACAAAGGTGAATCCT
GACGTGAAGACGGCGGAGGAGGCACTAAGTGACCCCGCTTGGTTGAAGTA
TATCAACGAGGGTGTTGAACGGGCCAACGCTCACGCTATCAGTAACGCGG
CAAAGGTTCGAAAGTTCCGCTTGCTTCCGAAAGACTTTACAGTTGATGGT
GGGGAACTCACTCCCACCATGAAGGTGAAGAGAAAGATTGTCGTGCAAAA
GTATGAAACCATTATTGAAGAAATGTACGCGTAG
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