Ggra6449.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6449.t1
Unique NameGgra6449.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:125543..126309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6449Ggra6449Gracilaria gracilis GNS1m malegenetig00000074_pilon 125543..126309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6449.t1Ggra6449.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 125543..126309 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6449.t1.start1Ggra6449.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 125543..125545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6449.t1.CDS1Ggra6449.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 125543..125703 +
Ggra6449.t1.CDS2Ggra6449.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 125781..126309 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6449.t1.exon1Ggra6449.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 125543..125703 +
Ggra6449.t1.exon2Ggra6449.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 125781..126309 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6449.t1.intron1Ggra6449.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 125704..125780 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6449.t1.stop1Ggra6449.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 126307..126309 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6449.t1 ID=Ggra6449.t1|Name=Ggra6449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MTSYEDLKTLAIEAITALDDAELTGVIGSAPSGAIPQHLDVTNAGHELAI
VLHITQEHGRFRPEQLRSLMLKSKQYEPSLPQYNHQDSPQALVIGFMDWK
LHCQTQLNEHLLTTNSNPVADEPAPAHNPNLLLLLEAILQTDSDNREPPV
KKRKAVTIGGVVTIDEKRKDTPNRKRLGVYPGKKTALHILAVKELLGGYI
LKDLTMSRDNLMIAISKVNWERGHHGEPL*
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spliced messenger RNA

>Ggra6449.t1 ID=Ggra6449.t1|Name=Ggra6449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000074_pilon:125543..126309+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGTTACGAGGATCTCAAAACCCTCGCCATTGAAGCAATCACGGC
ACTTGATGACGCAGAGTTAACGGGCGTTATAGGATCAGCTCCTTCTGGTG
CAATTCCGCAACATTTGGACGTCACCAATGCAGGGCACGAACTCGCCATC
GTTCTCCACATAACTCAAGAACATGGCAGATTCCGACCCGAACAACTTCG
CAGTCTCATGCTGAAGAGCAAGCAGTACGAACCCTCCCTGCCGCAGTACA
ACCACCAAGATAGCCCTCAGGCTCTTGTCATTGGATTCATGGACTGGAAA
CTACACTGTCAAACGCAGCTTAACGAGCACTTACTCACCACCAATTCCAA
CCCGGTAGCAGACGAACCCGCACCGGCTCACAACCCAAATCTTCTCCTTT
TGTTAGAAGCGATCCTCCAAACAGATAGCGACAATCGAGAACCACCTGTA
AAGAAGAGGAAGGCCGTCACAATTGGTGGAGTGGTCACCATTGATGAGAA
AAGAAAAGATACTCCAAACCGCAAGCGCCTCGGGGTCTACCCAGGAAAAA
AAACTGCCCTCCATATTCTAGCCGTCAAAGAGTTGTTGGGAGGGTATATT
CTGAAAGATCTAACTATGAGCCGCGACAATCTAATGATTGCCATATCCAA
GGTCAACTGGGAAAGAGGCCATCACGGAGAGCCCCTTTGA
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protein sequence of Ggra6449.t1

>Ggra6449.t1 ID=Ggra6449.t1|Name=Ggra6449.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MTSYEDLKTLAIEAITALDDAELTGVIGSAPSGAIPQHLDVTNAGHELAI
VLHITQEHGRFRPEQLRSLMLKSKQYEPSLPQYNHQDSPQALVIGFMDWK
LHCQTQLNEHLLTTNSNPVADEPAPAHNPNLLLLLEAILQTDSDNREPPV
KKRKAVTIGGVVTIDEKRKDTPNRKRLGVYPGKKTALHILAVKELLGGYI
LKDLTMSRDNLMIAISKVNWERGHHGEPL*
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mRNA from alignment at tig00000074_pilon:125543..126309+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6449.t1 ID=Ggra6449.t1|Name=Ggra6449.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=767bp|location=Sequence derived from alignment at tig00000074_pilon:125543..126309+ (Gracilaria gracilis GNS1m male)
ATGACCAGTTACGAGGATCTCAAAACCCTCGCCATTGAAGCAATCACGGC
ACTTGATGACGCAGAGTTAACGGGCGTTATAGGATCAGCTCCTTCTGGTG
CAATTCCGCAACATTTGGACGTCACCAATGCAGGGCACGAACTCGCCATC
GTTCTCCACATGTATAAGCAACTTTAGGACAAACAAGATGAGATTGGTAA
AGCCGAACTAAAGAAGCTCTTAGAATCCTCTTCACCAGAACTCAAGAACA
TGGCAGATTCCGACCCGAACAACTTCGCAGTCTCATGCTGAAGAGCAAGC
AGTACGAACCCTCCCTGCCGCAGTACAACCACCAAGATAGCCCTCAGGCT
CTTGTCATTGGATTCATGGACTGGAAACTACACTGTCAAACGCAGCTTAA
CGAGCACTTACTCACCACCAATTCCAACCCGGTAGCAGACGAACCCGCAC
CGGCTCACAACCCAAATCTTCTCCTTTTGTTAGAAGCGATCCTCCAAACA
GATAGCGACAATCGAGAACCACCTGTAAAGAAGAGGAAGGCCGTCACAAT
TGGTGGAGTGGTCACCATTGATGAGAAAAGAAAAGATACTCCAAACCGCA
AGCGCCTCGGGGTCTACCCAGGAAAAAAAACTGCCCTCCATATTCTAGCC
GTCAAAGAGTTGTTGGGAGGGTATATTCTGAAAGATCTAACTATGAGCCG
CGACAATCTAATGATTGCCATATCCAAGGTCAACTGGGAAAGAGGCCATC
ACGGAGAGCCCCTTTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:125543..126309+

>Ggra6449.t1 ID=Ggra6449.t1|Name=Ggra6449.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000074_pilon:125543..126309+ (Gracilaria gracilis GNS1m male)
ATGACCAGTTACGAGGATCTCAAAACCCTCGCCATTGAAGCAATCACGGC
ACTTGATGACGCAGAGTTAACGGGCGTTATAGGATCAGCTCCTTCTGGTG
CAATTCCGCAACATTTGGACGTCACCAATGCAGGGCACGAACTCGCCATC
GTTCTCCACATAACTCAAGAACATGGCAGATTCCGACCCGAACAACTTCG
CAGTCTCATGCTGAAGAGCAAGCAGTACGAACCCTCCCTGCCGCAGTACA
ACCACCAAGATAGCCCTCAGGCTCTTGTCATTGGATTCATGGACTGGAAA
CTACACTGTCAAACGCAGCTTAACGAGCACTTACTCACCACCAATTCCAA
CCCGGTAGCAGACGAACCCGCACCGGCTCACAACCCAAATCTTCTCCTTT
TGTTAGAAGCGATCCTCCAAACAGATAGCGACAATCGAGAACCACCTGTA
AAGAAGAGGAAGGCCGTCACAATTGGTGGAGTGGTCACCATTGATGAGAA
AAGAAAAGATACTCCAAACCGCAAGCGCCTCGGGGTCTACCCAGGAAAAA
AAACTGCCCTCCATATTCTAGCCGTCAAAGAGTTGTTGGGAGGGTATATT
CTGAAAGATCTAACTATGAGCCGCGACAATCTAATGATTGCCATATCCAA
GGTCAACTGGGAAAGAGGCCATCACGGAGAGCCCCTTTGA
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