Ggra7873.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7873.t1
Unique NameGgra7873.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Homology
BLAST of Ggra7873.t1 vs. uniprot
Match: A0A2V3IX89 (Ribosome assembly protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX89_9FLOR)

HSP 1 Score: 244 bits (624), Expect = 1.010e-77
Identity = 124/221 (56.11%), Postives = 161/221 (72.85%), Query Frame = 0
Query:   42 VPNAKKEKRDQGHPSKAEPLAFDFRVAEPEAKDAIFHGAASLELPPTNEVRSMSQKDQHKYIQSVTETCEKLIQLLDETVLAFSKNEDGLGVEEQLMSDMARLRNVPVARRYVEMTLWRRIKLFGRERLEVAEELGYGSGKKETSDG--FLLHRSGEGDPNFVSYRDAYLKTVIERYEEDLDKIRENESLDAEQVDFLVQCLQSGADLFANLKCVEDREVK 260
            V NAKK+        +   L FD R+ +P+A  A+FHG ++L+LP  + ++SM  + QH Y +SVT  CEKLIQL+DETV  FSK  + +  EEQL+SDM RL+NVP+ARRYV+MTLWRR+K + RERL  A +LGYGSG + + D    L+H  G+ DP+F+SYRDAYLKTVI RYE+DL+KIRE+E LDAEQ  FL++CL+SGADLF NLK +E  E K
Sbjct:   35 VQNAKKKDLSIKESVQPRVLDFDVRIPQPDASQALFHGMSALDLPSGSVIQSMPPEAQHGYFESVTGVCEKLIQLIDETVRTFSKTSEEVSAEEQLISDMVRLKNVPMARRYVDMTLWRRVKSYSRERLRTARDLGYGSGNRASRDSGALLVHSQGDIDPDFLSYRDAYLKTVIHRYEDDLNKIRESERLDAEQATFLMRCLESGADLFGNLKSLEKEEEK 255          
BLAST of Ggra7873.t1 vs. uniprot
Match: A0A6P8HNH6 (Ribosome assembly protein 3 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HNH6_ACTTE)

HSP 1 Score: 63.5 bits (153), Expect = 7.560e-9
Identity = 41/148 (27.70%), Postives = 80/148 (54.05%), Query Frame = 0
Query:  112 KLIQLLDETVLAFSKNEDGLGVEE----QLMSDMARLRNVPVARRYVEMTLWRRIKLFGRE---RLEVAEELGYGSGKKETSDGFLLHRSGEGDPNFVSYRDAYLKTVIERYEEDLDKIRENESLDAEQVDFLVQCLQSGADLFANLK 252
            K+I L ++   A +K+ D   V++     L+ D+    ++P+  RY EM LW++I    +     +E  EE   GS   E ++          +    S+RD Y++ +   + +DLDK+R++ SLD ++V  L+ CL++G D++++++
Sbjct:   14 KVITLFNQ---AGNKSRDRKQVKDLAMDYLLKDLTTNPSLPIPERYCEMGLWKQIMQVNQHVWRLMESLEEQDVGSNDCEKTE-------NSAEKPKKSFRDFYMEMITSNFSDDLDKLRKDPSLDHKKVSILIDCLETGKDIWSDVE 151          
BLAST of Ggra7873.t1 vs. uniprot
Match: A0A3M6TEX0 (Ribosome assembly protein 3 n=3 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TEX0_POCDA)

HSP 1 Score: 64.3 bits (155), Expect = 2.030e-8
Identity = 44/190 (23.16%), Postives = 91/190 (47.89%), Query Frame = 0
Query:   84 ELPPTNEVRSMS-QKDQHKYIQSVTETCEKLIQLLDETVLAFSKNEDGLGVEEQLMSDMARLRNVPVAR------RYVEMTLWRRIKLFGRERLEVAEELGYGSGKKETSDG--------------FLLHRSGEGDPNFVSYRDAYLKTVIERYEEDLDKIRENESLDAEQVDFLVQCLQSGADLFANLK 252
            E  P +E++++  +  Q +Y + ++E   KL  L+ +    F K  +G    + +  D+  L++V +        +YVEM LWR++    ++  +  E+L     + +  D                      E      S+RD Y++     + +DLD++R+  SLD+ +V+ L+ CL++G D++++L+
Sbjct:   83 EWNPLDEIKALPFEMQQSRYAKKISEESFKLSGLIKKIFFLFKKLHEGRSFMKDITMDVF-LKDVKIKPSLAPPDQYVEMGLWRQVMQVNQQICQEMEQLDKKLEENDCQDDSEEDTPSKYAEXXXXXXPSMNESKDKTKSFRDYYMEMATSSFGDDLDRLRQEGSLDSRKVEMLINCLETGKDIWSDLE 271          
BLAST of Ggra7873.t1 vs. uniprot
Match: A0A2B4RMV3 (Ribosome assembly protein 3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RMV3_STYPI)

HSP 1 Score: 60.1 bits (144), Expect = 5.820e-7
Identity = 38/189 (20.11%), Postives = 94/189 (49.74%), Query Frame = 0
Query:   84 ELPPTNEVRSMSQKDQHKYIQSVTETCEKLIQLLDETVLAFSKNEDGLGVEEQLMSDMARLRNVPVAR------RYVEMTLWRRIKLFGRERLE--------VAEELGYGSGKKETSDGFLLH------RSGEGDPNFVSYRDAYLKTVIERYEEDLDKIRENESLDAEQVDFLVQCLQSGADLFANLK 252
            E  P++E++++  + + +Y   ++E   KL+ L+ +    F    +G    + +  D+  L++V +        +Y+++ LWR++    ++  +        + E +   + +++    F            E +    S+RD Y++     + +DLD++R+  SLD+ +V+ L+ CL++G D++++L+
Sbjct:   83 EWNPSDEIKALPFEMKQRYANKISEESFKLLALIKKISFLFKNLHEGRSYMKDITMDVF-LKDVKIKPSLAPPDQYIKIGLWRQVMQVNQQICQEMELLDKKLEENISQDNSEEDAPIKFTEKIEDNEPTMNESEGKTKSFRDYYMEMATSSFGDDLDRLRQEGSLDSRKVEMLINCLETGKDIWSDLE 270          
The following BLAST results are available for this feature:
BLAST of Ggra7873.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IX891.010e-7756.11Ribosome assembly protein 3 n=1 Tax=Gracilariopsis... [more]
A0A6P8HNH67.560e-927.70Ribosome assembly protein 3 n=1 Tax=Actinia tenebr... [more]
A0A3M6TEX02.030e-823.16Ribosome assembly protein 3 n=3 Tax=Pocillopora da... [more]
A0A2B4RMV35.820e-720.11Ribosome assembly protein 3 n=1 Tax=Stylophora pis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028217Ribosome-assembly protein 3, C-terminalPFAMPF14615Rsa3coord: 205..248
e-value: 1.3E-11
score: 43.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:208199..208996 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7873.t1Ggra7873.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 208199..208996 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7873.t1 ID=Ggra7873.t1|Name=Ggra7873.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MAIKDSPSPKLEHGADDKTRPGTREHSGKRKKRKKESKGSDVPNAKKEKR
DQGHPSKAEPLAFDFRVAEPEAKDAIFHGAASLELPPTNEVRSMSQKDQH
KYIQSVTETCEKLIQLLDETVLAFSKNEDGLGVEEQLMSDMARLRNVPVA
RRYVEMTLWRRIKLFGRERLEVAEELGYGSGKKETSDGFLLHRSGEGDPN
FVSYRDAYLKTVIERYEEDLDKIRENESLDAEQVDFLVQCLQSGADLFAN
LKCVEDREVKGKPSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028217Rsa3_C