Ggra2470.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2470.t1
Unique NameGgra2470.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:415621..416613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP070CT
Preferred nameSNZ1
PFAMsSOR_SNZ
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC01783,RC03043
KEGG koko:K06215
KEGG ReactionR07456
KEGG Pathwayko00750,map00750
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003922,GO:0005575,GO:0005576,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006725,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0017144,GO:0018130,GO:0019344,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901615,GO:1901617,GO:1902494,GO:1903600
Evalue1.55e-174
EggNOG OGsCOG0214@1|root,KOG1606@2759|Eukaryota
EC4.3.3.6
Descriptionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2470Ggra2470Gracilaria gracilis GNS1m malegenetig00000005_pilon 415621..416613 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2470.t1.start1Ggra2470.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 415621..415623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2470.t1.CDS1Ggra2470.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 415621..416613 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2470.t1.exon1Ggra2470.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 415621..416613 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2470.t1.stop1Ggra2470.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 416611..416613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2470.t1Ggra2470.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 415621..416613 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2470.t1 ID=Ggra2470.t1|Name=Ggra2470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MATNANGRTNGTAHSLPGTAFAATQPAPAVSHDDVAHTSTYATKVGLAQM
LKGGVIMDVVTPEQAKLAEAAGACAVMALERIPADIRANGQVARMSDPTM
IKSIQDAVSIPVMAKARIGHFVEAQILQAIGIDYIDESEVLTPADDLHHI
NKHNFAVPFVCGCRNLGEALRRIAEGAAFIRTKGEAGTGNVVEAVRHGRE
VSGQIRRLRNMDDDELYTFAKEIGAPLDLLRRTKELGRLPVVQFAAGGVA
TPADAALMMQLGMDGVFVGSGIFKSDNPKKRAEAIVKAVTNYNNPKILAA
VSENLGNAMVGIEMDQLVQKWAADSRHKTH*
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spliced messenger RNA

>Ggra2470.t1 ID=Ggra2470.t1|Name=Ggra2470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000005_pilon:415621..416613+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCAACGCAAATGGACGTACCAATGGCACTGCGCACTCCTTGCC
TGGCACCGCCTTCGCTGCCACGCAGCCCGCCCCGGCCGTGTCTCACGACG
ATGTCGCGCACACCTCCACCTACGCCACCAAGGTCGGCCTCGCGCAGATG
CTCAAGGGCGGCGTCATCATGGACGTCGTCACCCCTGAACAGGCAAAGCT
CGCCGAGGCCGCTGGAGCCTGCGCCGTCATGGCTCTGGAGCGAATCCCTG
CCGACATCCGCGCTAACGGCCAGGTGGCGCGAATGTCGGACCCCACCATG
ATCAAGAGCATTCAGGACGCCGTTTCCATCCCGGTCATGGCCAAGGCTCG
TATCGGTCACTTTGTGGAGGCCCAGATTCTGCAGGCCATTGGAATCGACT
ACATCGACGAGAGCGAGGTGCTCACACCTGCCGACGACCTGCATCATATA
AACAAGCACAATTTTGCTGTGCCGTTTGTCTGTGGATGCCGTAATCTTGG
CGAGGCGCTCCGTCGTATTGCCGAAGGCGCTGCATTCATTCGAACCAAGG
GCGAGGCTGGTACTGGCAACGTGGTGGAGGCTGTTCGCCATGGTAGGGAG
GTGAGCGGCCAGATTCGCCGCCTTAGGAACATGGACGACGATGAGCTTTA
TACTTTTGCCAAGGAAATCGGAGCGCCATTGGATCTATTGCGACGCACGA
AGGAACTCGGAAGGTTGCCGGTGGTACAATTCGCCGCCGGAGGCGTCGCT
ACACCGGCGGACGCTGCGCTCATGATGCAGCTTGGCATGGACGGCGTGTT
TGTGGGAAGCGGCATTTTCAAGAGCGATAACCCTAAGAAGAGGGCTGAGG
CAATTGTCAAGGCTGTCACCAACTACAACAACCCCAAGATCCTTGCTGCT
GTGTCGGAGAACCTTGGCAACGCCATGGTGGGTATTGAGATGGATCAACT
TGTGCAAAAGTGGGCTGCTGACTCGCGGCACAAGACTCACTAA
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protein sequence of Ggra2470.t1

>Ggra2470.t1 ID=Ggra2470.t1|Name=Ggra2470.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MATNANGRTNGTAHSLPGTAFAATQPAPAVSHDDVAHTSTYATKVGLAQM
LKGGVIMDVVTPEQAKLAEAAGACAVMALERIPADIRANGQVARMSDPTM
IKSIQDAVSIPVMAKARIGHFVEAQILQAIGIDYIDESEVLTPADDLHHI
NKHNFAVPFVCGCRNLGEALRRIAEGAAFIRTKGEAGTGNVVEAVRHGRE
VSGQIRRLRNMDDDELYTFAKEIGAPLDLLRRTKELGRLPVVQFAAGGVA
TPADAALMMQLGMDGVFVGSGIFKSDNPKKRAEAIVKAVTNYNNPKILAA
VSENLGNAMVGIEMDQLVQKWAADSRHKTH*
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mRNA from alignment at tig00000005_pilon:415621..416613+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2470.t1 ID=Ggra2470.t1|Name=Ggra2470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000005_pilon:415621..416613+ (Gracilaria gracilis GNS1m male)
ATGGCCACCAACGCAAATGGACGTACCAATGGCACTGCGCACTCCTTGCC
TGGCACCGCCTTCGCTGCCACGCAGCCCGCCCCGGCCGTGTCTCACGACG
ATGTCGCGCACACCTCCACCTACGCCACCAAGGTCGGCCTCGCGCAGATG
CTCAAGGGCGGCGTCATCATGGACGTCGTCACCCCTGAACAGGCAAAGCT
CGCCGAGGCCGCTGGAGCCTGCGCCGTCATGGCTCTGGAGCGAATCCCTG
CCGACATCCGCGCTAACGGCCAGGTGGCGCGAATGTCGGACCCCACCATG
ATCAAGAGCATTCAGGACGCCGTTTCCATCCCGGTCATGGCCAAGGCTCG
TATCGGTCACTTTGTGGAGGCCCAGATTCTGCAGGCCATTGGAATCGACT
ACATCGACGAGAGCGAGGTGCTCACACCTGCCGACGACCTGCATCATATA
AACAAGCACAATTTTGCTGTGCCGTTTGTCTGTGGATGCCGTAATCTTGG
CGAGGCGCTCCGTCGTATTGCCGAAGGCGCTGCATTCATTCGAACCAAGG
GCGAGGCTGGTACTGGCAACGTGGTGGAGGCTGTTCGCCATGGTAGGGAG
GTGAGCGGCCAGATTCGCCGCCTTAGGAACATGGACGACGATGAGCTTTA
TACTTTTGCCAAGGAAATCGGAGCGCCATTGGATCTATTGCGACGCACGA
AGGAACTCGGAAGGTTGCCGGTGGTACAATTCGCCGCCGGAGGCGTCGCT
ACACCGGCGGACGCTGCGCTCATGATGCAGCTTGGCATGGACGGCGTGTT
TGTGGGAAGCGGCATTTTCAAGAGCGATAACCCTAAGAAGAGGGCTGAGG
CAATTGTCAAGGCTGTCACCAACTACAACAACCCCAAGATCCTTGCTGCT
GTGTCGGAGAACCTTGGCAACGCCATGGTGGGTATTGAGATGGATCAACT
TGTGCAAAAGTGGGCTGCTGACTCGCGGCACAAGACTCACTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:415621..416613+

>Ggra2470.t1 ID=Ggra2470.t1|Name=Ggra2470.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000005_pilon:415621..416613+ (Gracilaria gracilis GNS1m male)
ATGGCCACCAACGCAAATGGACGTACCAATGGCACTGCGCACTCCTTGCC
TGGCACCGCCTTCGCTGCCACGCAGCCCGCCCCGGCCGTGTCTCACGACG
ATGTCGCGCACACCTCCACCTACGCCACCAAGGTCGGCCTCGCGCAGATG
CTCAAGGGCGGCGTCATCATGGACGTCGTCACCCCTGAACAGGCAAAGCT
CGCCGAGGCCGCTGGAGCCTGCGCCGTCATGGCTCTGGAGCGAATCCCTG
CCGACATCCGCGCTAACGGCCAGGTGGCGCGAATGTCGGACCCCACCATG
ATCAAGAGCATTCAGGACGCCGTTTCCATCCCGGTCATGGCCAAGGCTCG
TATCGGTCACTTTGTGGAGGCCCAGATTCTGCAGGCCATTGGAATCGACT
ACATCGACGAGAGCGAGGTGCTCACACCTGCCGACGACCTGCATCATATA
AACAAGCACAATTTTGCTGTGCCGTTTGTCTGTGGATGCCGTAATCTTGG
CGAGGCGCTCCGTCGTATTGCCGAAGGCGCTGCATTCATTCGAACCAAGG
GCGAGGCTGGTACTGGCAACGTGGTGGAGGCTGTTCGCCATGGTAGGGAG
GTGAGCGGCCAGATTCGCCGCCTTAGGAACATGGACGACGATGAGCTTTA
TACTTTTGCCAAGGAAATCGGAGCGCCATTGGATCTATTGCGACGCACGA
AGGAACTCGGAAGGTTGCCGGTGGTACAATTCGCCGCCGGAGGCGTCGCT
ACACCGGCGGACGCTGCGCTCATGATGCAGCTTGGCATGGACGGCGTGTT
TGTGGGAAGCGGCATTTTCAAGAGCGATAACCCTAAGAAGAGGGCTGAGG
CAATTGTCAAGGCTGTCACCAACTACAACAACCCCAAGATCCTTGCTGCT
GTGTCGGAGAACCTTGGCAACGCCATGGTGGGTATTGAGATGGATCAACT
TGTGCAAAAGTGGGCTGCTGACTCGCGGCACAAGACTCACTAA
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