Ggra2517.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2517.t1
Unique NameGgra2517.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:555721..556938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog121225.PHUM513420-PA
Preferred nameWARS
PFAMsWHEP-TRS,tRNA-synt_1b
Max annot lvl33208|Metazoa
KEGG rclassRC00055,RC00523
KEGG koko:K01867,ko:K10402
KEGG ReactionR03664
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000902,GO:0000904,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006469,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009653,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010835,GO:0016043,GO:0016070,GO:0016358,GO:0016874,GO:0016875,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022008,GO:0022603,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031324,GO:0031334,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033673,GO:0034641,GO:0034645,GO:0034660,GO:0042127,GO:0042325,GO:0042326,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0045859,GO:0045936,GO:0046483,GO:0046983,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:0120036,GO:0120039,GO:0140098,GO:0140101,GO:1901342,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:2000026
Evalue1.01e-170
EggNOG OGsCOG0180@1|root,KOG2145@2759|Eukaryota,38F6E@33154|Opisthokonta,3BD7C@33208|Metazoa,3CZHB@33213|Bilateria,41W2N@6656|Arthropoda,3SJ5I@50557|Insecta,3E9QE@33342|Paraneoptera
EC6.1.1.2
DescriptiontRNA synthetases class I (W and Y)
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036,ko04131,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2517Ggra2517Gracilaria gracilis GNS1m malegenetig00000005_pilon 555721..556938 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2517.t1.stop1Ggra2517.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 555721..555723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2517.t1.CDS1Ggra2517.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 555721..556938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2517.t1.exon1Ggra2517.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 555721..556938 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2517.t1.start1Ggra2517.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 556936..556938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2517.t1Ggra2517.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 555721..556938 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2517.t1 ID=Ggra2517.t1|Name=Ggra2517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=406bp
MGLDSNLNSVAGQQETQEAIVTPWVVSGVIDYSKLIEQFGSTPISEALLS
RFEALTGEKPHLFLRRGIFFSHRDLDHLLNRYEAGEKFFLYTGRGPSSTA
LHLGHLIPFIFTRYLQRVFNVPCVIQLTDDEKFLFAKQPKGSEAPKPLEH
FQSLARENAKDIIAVGFDPDKTFIFTDTEYIGHLYCNVLKIQRATTYNQA
KGIFGFTDSDNIGKHGFPAVQAAPSFSTSFPVVLKGQPTMPCFIPCAIDQ
DPYFRMTRDVAPRLSYVKPALIHSKFFPALQGDNTKMSSSIAESAIFLDD
TPKKIKTKVNKYAFSGGRQTIEEHRRLGANVDVDVSYRYLTFFLDDDQRL
AEIKQQYASGEMLSGEIKKELIQVLQPLVAEHQKKRELVTEEVLDRFFEI
RPLNF*
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spliced messenger RNA

>Ggra2517.t1 ID=Ggra2517.t1|Name=Ggra2517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000005_pilon:555721..556938- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTTGATTCTAACCTGAATTCAGTAGCAGGGCAGCAAGAGACACA
GGAAGCTATAGTAACTCCCTGGGTTGTATCCGGAGTAATCGACTACAGCA
AGCTCATCGAACAGTTCGGCTCAACACCAATCTCTGAAGCTTTGCTAAGC
CGCTTCGAGGCTCTCACAGGCGAAAAGCCTCATCTCTTCTTGCGTCGTGG
AATCTTTTTTTCACACCGTGACCTTGATCATTTGCTCAATCGATATGAAG
CCGGTGAGAAGTTTTTCTTGTATACTGGAAGAGGACCTTCTTCTACTGCT
TTGCATCTGGGTCATTTGATTCCTTTTATCTTCACTCGTTATTTACAACG
AGTGTTTAACGTGCCTTGCGTTATTCAATTGACAGATGATGAGAAATTCC
TATTTGCGAAACAACCGAAAGGAAGTGAAGCACCAAAACCATTAGAACAT
TTTCAATCGTTAGCAAGAGAGAATGCGAAGGACATTATCGCCGTCGGTTT
TGATCCAGATAAGACTTTTATCTTTACGGACACTGAATATATTGGTCATC
TTTACTGCAACGTTCTCAAGATTCAACGTGCAACCACTTACAATCAAGCT
AAAGGAATCTTTGGCTTCACTGATTCTGACAACATAGGCAAACATGGGTT
CCCCGCCGTACAAGCGGCGCCATCATTTTCAACAAGCTTTCCAGTTGTAC
TAAAGGGACAACCAACGATGCCATGTTTCATTCCCTGCGCAATTGATCAG
GATCCATATTTCCGGATGACCCGAGATGTTGCTCCTCGTCTATCGTACGT
CAAACCGGCTCTCATTCACTCAAAATTCTTCCCGGCACTGCAAGGCGACA
ACACGAAGATGTCCTCGTCAATAGCTGAGAGTGCAATCTTTCTCGACGAT
ACACCAAAGAAGATCAAGACAAAGGTGAACAAATATGCCTTCTCAGGAGG
TCGACAGACAATTGAAGAACATCGCAGATTGGGAGCAAATGTCGATGTCG
ATGTCTCATATCGATATCTCACGTTCTTCCTTGATGATGATCAACGTCTT
GCTGAAATCAAGCAGCAGTATGCAAGCGGCGAGATGCTCTCCGGCGAGAT
TAAGAAGGAGCTCATACAGGTTTTGCAACCGCTAGTAGCGGAGCACCAGA
AGAAACGAGAATTAGTTACGGAAGAGGTCCTGGACCGTTTCTTTGAAATT
AGACCACTAAACTTTTAG
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protein sequence of Ggra2517.t1

>Ggra2517.t1 ID=Ggra2517.t1|Name=Ggra2517.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=406bp
MGLDSNLNSVAGQQETQEAIVTPWVVSGVIDYSKLIEQFGSTPISEALLS
RFEALTGEKPHLFLRRGIFFSHRDLDHLLNRYEAGEKFFLYTGRGPSSTA
LHLGHLIPFIFTRYLQRVFNVPCVIQLTDDEKFLFAKQPKGSEAPKPLEH
FQSLARENAKDIIAVGFDPDKTFIFTDTEYIGHLYCNVLKIQRATTYNQA
KGIFGFTDSDNIGKHGFPAVQAAPSFSTSFPVVLKGQPTMPCFIPCAIDQ
DPYFRMTRDVAPRLSYVKPALIHSKFFPALQGDNTKMSSSIAESAIFLDD
TPKKIKTKVNKYAFSGGRQTIEEHRRLGANVDVDVSYRYLTFFLDDDQRL
AEIKQQYASGEMLSGEIKKELIQVLQPLVAEHQKKRELVTEEVLDRFFEI
RPLNF*
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mRNA from alignment at tig00000005_pilon:555721..556938-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2517.t1 ID=Ggra2517.t1|Name=Ggra2517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000005_pilon:555721..556938- (Gracilaria gracilis GNS1m male)
ATGGGGCTTGATTCTAACCTGAATTCAGTAGCAGGGCAGCAAGAGACACA
GGAAGCTATAGTAACTCCCTGGGTTGTATCCGGAGTAATCGACTACAGCA
AGCTCATCGAACAGTTCGGCTCAACACCAATCTCTGAAGCTTTGCTAAGC
CGCTTCGAGGCTCTCACAGGCGAAAAGCCTCATCTCTTCTTGCGTCGTGG
AATCTTTTTTTCACACCGTGACCTTGATCATTTGCTCAATCGATATGAAG
CCGGTGAGAAGTTTTTCTTGTATACTGGAAGAGGACCTTCTTCTACTGCT
TTGCATCTGGGTCATTTGATTCCTTTTATCTTCACTCGTTATTTACAACG
AGTGTTTAACGTGCCTTGCGTTATTCAATTGACAGATGATGAGAAATTCC
TATTTGCGAAACAACCGAAAGGAAGTGAAGCACCAAAACCATTAGAACAT
TTTCAATCGTTAGCAAGAGAGAATGCGAAGGACATTATCGCCGTCGGTTT
TGATCCAGATAAGACTTTTATCTTTACGGACACTGAATATATTGGTCATC
TTTACTGCAACGTTCTCAAGATTCAACGTGCAACCACTTACAATCAAGCT
AAAGGAATCTTTGGCTTCACTGATTCTGACAACATAGGCAAACATGGGTT
CCCCGCCGTACAAGCGGCGCCATCATTTTCAACAAGCTTTCCAGTTGTAC
TAAAGGGACAACCAACGATGCCATGTTTCATTCCCTGCGCAATTGATCAG
GATCCATATTTCCGGATGACCCGAGATGTTGCTCCTCGTCTATCGTACGT
CAAACCGGCTCTCATTCACTCAAAATTCTTCCCGGCACTGCAAGGCGACA
ACACGAAGATGTCCTCGTCAATAGCTGAGAGTGCAATCTTTCTCGACGAT
ACACCAAAGAAGATCAAGACAAAGGTGAACAAATATGCCTTCTCAGGAGG
TCGACAGACAATTGAAGAACATCGCAGATTGGGAGCAAATGTCGATGTCG
ATGTCTCATATCGATATCTCACGTTCTTCCTTGATGATGATCAACGTCTT
GCTGAAATCAAGCAGCAGTATGCAAGCGGCGAGATGCTCTCCGGCGAGAT
TAAGAAGGAGCTCATACAGGTTTTGCAACCGCTAGTAGCGGAGCACCAGA
AGAAACGAGAATTAGTTACGGAAGAGGTCCTGGACCGTTTCTTTGAAATT
AGACCACTAAACTTTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:555721..556938-

>Ggra2517.t1 ID=Ggra2517.t1|Name=Ggra2517.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00000005_pilon:555721..556938- (Gracilaria gracilis GNS1m male)
ATGGGGCTTGATTCTAACCTGAATTCAGTAGCAGGGCAGCAAGAGACACA
GGAAGCTATAGTAACTCCCTGGGTTGTATCCGGAGTAATCGACTACAGCA
AGCTCATCGAACAGTTCGGCTCAACACCAATCTCTGAAGCTTTGCTAAGC
CGCTTCGAGGCTCTCACAGGCGAAAAGCCTCATCTCTTCTTGCGTCGTGG
AATCTTTTTTTCACACCGTGACCTTGATCATTTGCTCAATCGATATGAAG
CCGGTGAGAAGTTTTTCTTGTATACTGGAAGAGGACCTTCTTCTACTGCT
TTGCATCTGGGTCATTTGATTCCTTTTATCTTCACTCGTTATTTACAACG
AGTGTTTAACGTGCCTTGCGTTATTCAATTGACAGATGATGAGAAATTCC
TATTTGCGAAACAACCGAAAGGAAGTGAAGCACCAAAACCATTAGAACAT
TTTCAATCGTTAGCAAGAGAGAATGCGAAGGACATTATCGCCGTCGGTTT
TGATCCAGATAAGACTTTTATCTTTACGGACACTGAATATATTGGTCATC
TTTACTGCAACGTTCTCAAGATTCAACGTGCAACCACTTACAATCAAGCT
AAAGGAATCTTTGGCTTCACTGATTCTGACAACATAGGCAAACATGGGTT
CCCCGCCGTACAAGCGGCGCCATCATTTTCAACAAGCTTTCCAGTTGTAC
TAAAGGGACAACCAACGATGCCATGTTTCATTCCCTGCGCAATTGATCAG
GATCCATATTTCCGGATGACCCGAGATGTTGCTCCTCGTCTATCGTACGT
CAAACCGGCTCTCATTCACTCAAAATTCTTCCCGGCACTGCAAGGCGACA
ACACGAAGATGTCCTCGTCAATAGCTGAGAGTGCAATCTTTCTCGACGAT
ACACCAAAGAAGATCAAGACAAAGGTGAACAAATATGCCTTCTCAGGAGG
TCGACAGACAATTGAAGAACATCGCAGATTGGGAGCAAATGTCGATGTCG
ATGTCTCATATCGATATCTCACGTTCTTCCTTGATGATGATCAACGTCTT
GCTGAAATCAAGCAGCAGTATGCAAGCGGCGAGATGCTCTCCGGCGAGAT
TAAGAAGGAGCTCATACAGGTTTTGCAACCGCTAGTAGCGGAGCACCAGA
AGAAACGAGAATTAGTTACGGAAGAGGTCCTGGACCGTTTCTTTGAAATT
AGACCACTAAACTTTTAG
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