Ggra7909.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7909.t1
Unique NameGgra7909.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:414921..415670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo7g107140.1
PFAMsLSM
Max annot lvl35493|Streptophyta
KEGG koko:K11086
KEGG Pathwayko03040,ko05322,map03040,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Evalue1.6e-33
EggNOG OGsCOG1958@1|root,KOG3168@2759|Eukaryota,37J8B@33090|Viridiplantae,3G7D6@35493|Streptophyta,3HQ4R@3699|Brassicales
DescriptionSmall nuclear
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7909Ggra7909Gracilaria gracilis GNS1m malegenetig00000073_pilon 414921..415670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1Ggra7909.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 414921..415670 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1.start1Ggra7909.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 414921..414923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1.CDS1Ggra7909.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 414921..415058 +
Ggra7909.t1.CDS2Ggra7909.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 415144..415485 +
Ggra7909.t1.CDS3Ggra7909.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000073_pilon 415593..415670 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1.exon1Ggra7909.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 414921..415058 +
Ggra7909.t1.exon2Ggra7909.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 415144..415485 +
Ggra7909.t1.exon3Ggra7909.t1.exon3Gracilaria gracilis GNS1m maleexontig00000073_pilon 415593..415670 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1.intron1Ggra7909.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 415059..415143 +
Ggra7909.t1.intron2Ggra7909.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000073_pilon 415486..415592 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1.stop1Ggra7909.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 415668..415670 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7909.t1 ID=Ggra7909.t1|Name=Ggra7909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQ
RRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDA
LGALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVAAPPFGRGVPPPAYA
PPPPTGAVGMAGVTDVMGNNARPMGYGRGAPPPSG*
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spliced messenger RNA

>Ggra7909.t1 ID=Ggra7909.t1|Name=Ggra7909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000073_pilon:414921..415670+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCAGTTTATAAACTATCGCGTTAGAGTAACGCTCGACGATCGCCG
CACCCTTGTGGGGCGCTTCTTGGCCTTCGACAAACACATGAACGTCGTCC
TATCCGACTGCGAAGAGTTTCGCAAGCCAAAGAAAACACAAAAGGATCAG
CGCCGAGCACTGGGTCTTATTTTACTCCGCGGCGAGAGCGTAGTGTCAAT
GGCTGTGGAGAGCCCACCAGCTCCGAAGAAAGGTAAGCGAAGCGCCACGG
CAGCCGGTCTGCCTATATCGGAGCGAGCGCCACCGGGCCGAGGAGATGCG
TTGGGCGCCCTCGCAGGTCCAGCGCCGGGCCTTGGTGGGCCTGCGCAGCC
GCAGCTGGCGGCACAGCCGAGGATGTACGCACCGCCACCATACGGGCGGG
GCGTTGCTGCTCCACCCTTCGGACGTGGAGTACCACCGCCAGCTTATGCG
CCGCCACCTCCAACCGGTGCTGTCGGTATGGCGGGAGTGACGGATGTTAT
GGGGAACAATGCACGACCGATGGGTTATGGAAGAGGTGCACCACCTCCCA
GTGGATAG
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protein sequence of Ggra7909.t1

>Ggra7909.t1 ID=Ggra7909.t1|Name=Ggra7909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQ
RRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDA
LGALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVAAPPFGRGVPPPAYA
PPPPTGAVGMAGVTDVMGNNARPMGYGRGAPPPSG*
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mRNA from alignment at tig00000073_pilon:414921..415670+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7909.t1 ID=Ggra7909.t1|Name=Ggra7909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000073_pilon:414921..415670+ (Gracilaria gracilis GNS1m male)
ATGCTCCAGTTTATAAACTATCGCGTTAGAGTAACGCTCGACGATCGCCG
CACCCTTGTGGGGCGCTTCTTGGCCTTCGACAAACACATGAACGTCGTCC
TATCCGACTGCGAAGAGTTTCGCAAGCCAAAGAAAACAGTATGTATGATA
TATGTCATGCCTCTCCTCAAGAACTCAGAATAACTAACCAATCAATCACA
TGTTCTCCATCAAACACGTACAGCAAAAGGATCAGCGCCGAGCACTGGGT
CTTATTTTACTCCGCGGCGAGAGCGTAGTGTCAATGGCTGTGGAGAGCCC
ACCAGCTCCGAAGAAAGGTAAGCGAAGCGCCACGGCAGCCGGTCTGCCTA
TATCGGAGCGAGCGCCACCGGGCCGAGGAGATGCGTTGGGCGCCCTCGCA
GGTCCAGCGCCGGGCCTTGGTGGGCCTGCGCAGCCGCAGCTGGCGGCACA
GCCGAGGATGTACGCACCGCCACCATACGGGCGGGGCGTTGCTGCTCCAC
CCTTCGGACGTGGAGTACCACCGCCAGCTTATGCGCCGCCACCTCCAACC
GGTGCTGTCGGTATGGTAAGTTTTTCGGTCAGCAAGTTTTTGCTACATGC
GGTAGACTTGAGCTGTTGTTTGTGAGCGCTGACATTAGAGCTTTTCTATG
TTTTGCTGTGTTGCGATTCTAGGCGGGAGTGACGGATGTTATGGGGAACA
ATGCACGACCGATGGGTTATGGAAGAGGTGCACCACCTCCCAGTGGATAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:414921..415670+

>Ggra7909.t1 ID=Ggra7909.t1|Name=Ggra7909.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000073_pilon:414921..415670+ (Gracilaria gracilis GNS1m male)
ATGCTCCAGTTTATAAACTATCGCGTTAGAGTAACGCTCGACGATCGCCG
CACCCTTGTGGGGCGCTTCTTGGCCTTCGACAAACACATGAACGTCGTCC
TATCCGACTGCGAAGAGTTTCGCAAGCCAAAGAAAACACAAAAGGATCAG
CGCCGAGCACTGGGTCTTATTTTACTCCGCGGCGAGAGCGTAGTGTCAAT
GGCTGTGGAGAGCCCACCAGCTCCGAAGAAAGGTAAGCGAAGCGCCACGG
CAGCCGGTCTGCCTATATCGGAGCGAGCGCCACCGGGCCGAGGAGATGCG
TTGGGCGCCCTCGCAGGTCCAGCGCCGGGCCTTGGTGGGCCTGCGCAGCC
GCAGCTGGCGGCACAGCCGAGGATGTACGCACCGCCACCATACGGGCGGG
GCGTTGCTGCTCCACCCTTCGGACGTGGAGTACCACCGCCAGCTTATGCG
CCGCCACCTCCAACCGGTGCTGTCGGTATGGCGGGAGTGACGGATGTTAT
GGGGAACAATGCACGACCGATGGGTTATGGAAGAGGTGCACCACCTCCCA
GTGGATAG
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