Ggra5100.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5100.t1
Unique NameGgra5100.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:468112..469038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9031.ENSGALP00000028167
Preferred nameDOHH
PFAMsHEAT_2,HEAT_PBS
Max annot lvl33208|Metazoa
KEGG koko:K06072,ko:K08187
KEGG TC2.A.1.13
KEGG Pathwayko04919,ko04974,map04919,map04974
GOsGO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010506,GO:0010508,GO:0012505,GO:0016020,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0036211,GO:0042175,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051604,GO:0055114,GO:0065007,GO:0071704,GO:0098827,GO:1901564
Evalue4.83e-56
EggNOG OGsCOG1413@1|root,KOG0567@2759|Eukaryota,38FQT@33154|Opisthokonta,3BEHM@33208|Metazoa,3CTX7@33213|Bilateria,48BB0@7711|Chordata,498X0@7742|Vertebrata,4GNEN@8782|Aves
EC1.14.99.29
DescriptionCatalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor
COG categoryC
BRITEko00000,ko00001,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5100Ggra5100Gracilaria gracilis GNS1m malegenetig00000069_pilon 468112..469038 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5100.t1.start1Ggra5100.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 468112..468114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5100.t1.CDS1Ggra5100.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 468112..469038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5100.t1.exon1Ggra5100.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 468112..469038 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5100.t1.stop1Ggra5100.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 469036..469038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5100.t1Ggra5100.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 468112..469038 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5100.t1 ID=Ggra5100.t1|Name=Ggra5100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MTTVEQIVSLLHCSDTPVSARMRSIFSLKGLATADAVRALERSLLSDPSA
LVRHEVAYVLGQMGASDSLPTLKGVLQDASEDVMVRHEAAEAMGAIANVS
ALPLLEAYASDQSLAQEIRETCILAVHRIKWIQRHHEKSTHVPYTSVDPA
PAHHEHDVSQLQAVLCDTSKPLFDRYKAMFALRNTGGEQAVLALCAGMQA
DKQSALFRHEVAYVLGQMQHHASIPTLEHFLKDQNEHEMVRHEAAEALGS
IGSDAAENILSQFRTDEKDVVRESVEVALDISDYVSGNDLHYAQKVDTVT
QSTSLRAT*
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spliced messenger RNA

>Ggra5100.t1 ID=Ggra5100.t1|Name=Ggra5100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000069_pilon:468112..469038+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACAGTAGAGCAAATCGTTTCACTGCTGCATTGTAGCGACACTCC
GGTGTCCGCTCGCATGCGCTCCATCTTCAGTCTCAAGGGACTGGCCACTG
CGGACGCCGTGCGCGCTTTGGAGCGCTCTCTCCTGTCTGATCCGTCCGCG
CTTGTCCGTCACGAAGTGGCGTACGTGCTTGGTCAGATGGGCGCTTCGGA
TTCGCTTCCAACGCTGAAAGGCGTTCTTCAGGACGCCTCTGAGGACGTCA
TGGTACGCCATGAGGCTGCAGAAGCAATGGGTGCAATTGCCAACGTCTCG
GCGTTGCCGTTGTTGGAAGCATATGCATCGGATCAATCGCTTGCCCAGGA
GATTAGAGAAACTTGCATCCTGGCAGTTCATCGAATCAAATGGATTCAGC
GCCACCATGAAAAGTCGACCCATGTGCCGTACACCTCGGTTGACCCAGCC
CCAGCGCATCACGAACACGACGTTAGTCAACTTCAGGCCGTTCTCTGCGA
TACTTCAAAGCCCTTGTTTGACCGATATAAGGCCATGTTTGCCCTCAGGA
ACACAGGCGGTGAACAAGCAGTGCTGGCCTTGTGTGCTGGAATGCAAGCC
GACAAACAGAGCGCCCTATTCCGTCATGAGGTCGCTTACGTCCTAGGGCA
AATGCAACATCACGCTTCAATTCCTACGCTTGAGCATTTTCTCAAGGACC
AAAACGAGCATGAGATGGTACGTCATGAAGCTGCAGAAGCGTTGGGTAGC
ATAGGTTCCGACGCTGCCGAGAACATTCTGTCACAGTTTCGAACCGATGA
AAAGGATGTTGTTAGGGAATCTGTTGAGGTTGCACTGGATATATCAGATT
ATGTATCTGGAAATGATCTTCATTACGCCCAAAAGGTTGACACCGTTACC
CAGTCAACGTCGCTTCGAGCAACTTGA
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protein sequence of Ggra5100.t1

>Ggra5100.t1 ID=Ggra5100.t1|Name=Ggra5100.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MTTVEQIVSLLHCSDTPVSARMRSIFSLKGLATADAVRALERSLLSDPSA
LVRHEVAYVLGQMGASDSLPTLKGVLQDASEDVMVRHEAAEAMGAIANVS
ALPLLEAYASDQSLAQEIRETCILAVHRIKWIQRHHEKSTHVPYTSVDPA
PAHHEHDVSQLQAVLCDTSKPLFDRYKAMFALRNTGGEQAVLALCAGMQA
DKQSALFRHEVAYVLGQMQHHASIPTLEHFLKDQNEHEMVRHEAAEALGS
IGSDAAENILSQFRTDEKDVVRESVEVALDISDYVSGNDLHYAQKVDTVT
QSTSLRAT*
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mRNA from alignment at tig00000069_pilon:468112..469038+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5100.t1 ID=Ggra5100.t1|Name=Ggra5100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000069_pilon:468112..469038+ (Gracilaria gracilis GNS1m male)
ATGACCACAGTAGAGCAAATCGTTTCACTGCTGCATTGTAGCGACACTCC
GGTGTCCGCTCGCATGCGCTCCATCTTCAGTCTCAAGGGACTGGCCACTG
CGGACGCCGTGCGCGCTTTGGAGCGCTCTCTCCTGTCTGATCCGTCCGCG
CTTGTCCGTCACGAAGTGGCGTACGTGCTTGGTCAGATGGGCGCTTCGGA
TTCGCTTCCAACGCTGAAAGGCGTTCTTCAGGACGCCTCTGAGGACGTCA
TGGTACGCCATGAGGCTGCAGAAGCAATGGGTGCAATTGCCAACGTCTCG
GCGTTGCCGTTGTTGGAAGCATATGCATCGGATCAATCGCTTGCCCAGGA
GATTAGAGAAACTTGCATCCTGGCAGTTCATCGAATCAAATGGATTCAGC
GCCACCATGAAAAGTCGACCCATGTGCCGTACACCTCGGTTGACCCAGCC
CCAGCGCATCACGAACACGACGTTAGTCAACTTCAGGCCGTTCTCTGCGA
TACTTCAAAGCCCTTGTTTGACCGATATAAGGCCATGTTTGCCCTCAGGA
ACACAGGCGGTGAACAAGCAGTGCTGGCCTTGTGTGCTGGAATGCAAGCC
GACAAACAGAGCGCCCTATTCCGTCATGAGGTCGCTTACGTCCTAGGGCA
AATGCAACATCACGCTTCAATTCCTACGCTTGAGCATTTTCTCAAGGACC
AAAACGAGCATGAGATGGTACGTCATGAAGCTGCAGAAGCGTTGGGTAGC
ATAGGTTCCGACGCTGCCGAGAACATTCTGTCACAGTTTCGAACCGATGA
AAAGGATGTTGTTAGGGAATCTGTTGAGGTTGCACTGGATATATCAGATT
ATGTATCTGGAAATGATCTTCATTACGCCCAAAAGGTTGACACCGTTACC
CAGTCAACGTCGCTTCGAGCAACTTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:468112..469038+

>Ggra5100.t1 ID=Ggra5100.t1|Name=Ggra5100.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000069_pilon:468112..469038+ (Gracilaria gracilis GNS1m male)
ATGACCACAGTAGAGCAAATCGTTTCACTGCTGCATTGTAGCGACACTCC
GGTGTCCGCTCGCATGCGCTCCATCTTCAGTCTCAAGGGACTGGCCACTG
CGGACGCCGTGCGCGCTTTGGAGCGCTCTCTCCTGTCTGATCCGTCCGCG
CTTGTCCGTCACGAAGTGGCGTACGTGCTTGGTCAGATGGGCGCTTCGGA
TTCGCTTCCAACGCTGAAAGGCGTTCTTCAGGACGCCTCTGAGGACGTCA
TGGTACGCCATGAGGCTGCAGAAGCAATGGGTGCAATTGCCAACGTCTCG
GCGTTGCCGTTGTTGGAAGCATATGCATCGGATCAATCGCTTGCCCAGGA
GATTAGAGAAACTTGCATCCTGGCAGTTCATCGAATCAAATGGATTCAGC
GCCACCATGAAAAGTCGACCCATGTGCCGTACACCTCGGTTGACCCAGCC
CCAGCGCATCACGAACACGACGTTAGTCAACTTCAGGCCGTTCTCTGCGA
TACTTCAAAGCCCTTGTTTGACCGATATAAGGCCATGTTTGCCCTCAGGA
ACACAGGCGGTGAACAAGCAGTGCTGGCCTTGTGTGCTGGAATGCAAGCC
GACAAACAGAGCGCCCTATTCCGTCATGAGGTCGCTTACGTCCTAGGGCA
AATGCAACATCACGCTTCAATTCCTACGCTTGAGCATTTTCTCAAGGACC
AAAACGAGCATGAGATGGTACGTCATGAAGCTGCAGAAGCGTTGGGTAGC
ATAGGTTCCGACGCTGCCGAGAACATTCTGTCACAGTTTCGAACCGATGA
AAAGGATGTTGTTAGGGAATCTGTTGAGGTTGCACTGGATATATCAGATT
ATGTATCTGGAAATGATCTTCATTACGCCCAAAAGGTTGACACCGTTACC
CAGTCAACGTCGCTTCGAGCAACTTGA
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