Ggra5095.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5095.t1
Unique NameGgra5095.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:448385..449996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3641.EOY11267
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Max annot lvl35493|Streptophyta
Evalue1.7e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
DescriptionMitochondrial protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5095Ggra5095Gracilaria gracilis GNS1m malegenetig00000069_pilon 448385..449996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5095.t1Ggra5095.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 448385..449996 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5095.t1.start1Ggra5095.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 448385..448387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5095.t1.CDS1Ggra5095.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 448385..449864 +
Ggra5095.t1.CDS2Ggra5095.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 449929..449996 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5095.t1.exon1Ggra5095.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 448385..449864 +
Ggra5095.t1.exon2Ggra5095.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 449929..449996 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5095.t1.intron1Ggra5095.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 449865..449928 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5095.t1.stop1Ggra5095.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 449994..449996 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5095.t1 ID=Ggra5095.t1|Name=Ggra5095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MSGTNEGLLGRLPKLKVPTDYILWRRRLLAYLRRDDPFLSGLDPRPDGFN
PTNRAMRSWFEKSVKAKSTITLCLGDSPLALVRMFVDDDDKTAKDLWDEL
QRVYTTTNAQAVQNIRHRLDTLVYKDSDDWNKHVAKFLEVVGELATFDEE
LSEKDKVSKLIRSLPNSFGPLAMMSNLTDVGFDSIVNAVEAEVARRKNPN
NPTSSAPSSTPTTQPKANTANKGGRKQRNRRNKSSATKSRYDDNCYYCGR
RGHYARDCYKRKREESDNNDNQHNSNGRQQSNRNNGGSRRSQYGSHKGGQ
RQSNWNSGFAPRGDGNDNRNSNHNSKPRSYVVQRNDDPPPSPGFNCNMAK
FKSKIALLSQTKLDSAYIDSGATHHFFHSRKSFIRYERIEIETVQAASGT
ARLVGKGHVWIPLNRGTVIEAYHAPAFESNILSVGVLSVEFMVMFTSTIR
PFNGCFIMDPNRNSEIIWETEINQGLFVMDLADNDKQVMVVNANTRTLPS
LSTLCLTFNVPSWSR*
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spliced messenger RNA

>Ggra5095.t1 ID=Ggra5095.t1|Name=Ggra5095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000069_pilon:448385..449996+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcgggcacaaatgagggtctccttggcaggcttccaaagctcaaggt
ccccaccgactacattctctggcgtcgtcgtcttctggcgtatctccgca
gagacgacccatttctttccggtcttgacccacgtcctgatgggttcaac
cccacaaaccgggcaatgagatcttggttcgaaaagtcagtcaaagcgaa
gagcaccatcacactctgcctcggtgactctccgcttgctcttgttcgaa
tgtttgtcgatgatgatgacaaaacggccaaagatctctgggatgaactg
cagcgcgtgtacacaaccaccaacgcgcaagctgtgcagaacatccgcca
tcgtctggacactttggtatacaaggacagcgacgactggaacaagcacg
tcgctaagttcctggaagttgttggggaacttgccaccttcgatgaggaa
ctttcggagaaagacaaagtctccaaactcattcgaagtctccccaactc
ctttggtcccttggccatgatgtcaaacctaaccgatgtcgggttcgact
ccattgtgaacgctgtcgaagctgaagtggctcgtcgcaagaaccctaac
aacccgacatcctccgctccttcgtccacccccactacccaaccgaaagc
caacacggcaaacaagggtggtcgaaagcagcgaaaccggcgtaacaagt
cctcggctaccaagagccgctacgatgacaattgctactactgcggtcgt
cgtggacattacgctcgagattgctacaaacgcaaacgtgaggagtctga
caataatgataaccagcacaactccaacggacggcagcaatctaatcgca
acaacggtggttctcgtcgttcacagtatgggtcccacaaaggaggacaa
cgccaatccaactggaactcagggtttgcaccaaggggggatggaaatga
taatcgtaactcaaatcataactccaaacctcgttcatatgtggtgcaaa
gaaatgatgatccgcctccttcacctggcttcaactgcaatatggccaag
ttcaagagtaagatcgctcttctttctcaaacgaaattggactcagccta
tattgactcaggggcaactcatcacttcttccattcgcggaagtcgttca
ttcgatacgaacgaattgagatcgagactgttcaggcagcctcaggaaca
gctcgtctcgttggcaaaggtcatgtctggatacctttgaaccgtggtac
agtcatcgaggcttaccacgcgcctgcttttgagtcgaacatcctttctg
ttggcgttctcagtgtagagttcatggtgatgttcacttccaccattcgg
ccattcaatggatgtttcatcatggatcctaaccgaaactctgaaatcat
ttgggaaacggaaatcaaccaaggcctcttcgtcatggacctcgctgata
acgacaaacaagtgatggtcgtgaacgcaaataccagaaccttgccaagt
ctttcgactctgtgccttactttcaacgttccatcttggagtcgttga
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protein sequence of Ggra5095.t1

>Ggra5095.t1 ID=Ggra5095.t1|Name=Ggra5095.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MSGTNEGLLGRLPKLKVPTDYILWRRRLLAYLRRDDPFLSGLDPRPDGFN
PTNRAMRSWFEKSVKAKSTITLCLGDSPLALVRMFVDDDDKTAKDLWDEL
QRVYTTTNAQAVQNIRHRLDTLVYKDSDDWNKHVAKFLEVVGELATFDEE
LSEKDKVSKLIRSLPNSFGPLAMMSNLTDVGFDSIVNAVEAEVARRKNPN
NPTSSAPSSTPTTQPKANTANKGGRKQRNRRNKSSATKSRYDDNCYYCGR
RGHYARDCYKRKREESDNNDNQHNSNGRQQSNRNNGGSRRSQYGSHKGGQ
RQSNWNSGFAPRGDGNDNRNSNHNSKPRSYVVQRNDDPPPSPGFNCNMAK
FKSKIALLSQTKLDSAYIDSGATHHFFHSRKSFIRYERIEIETVQAASGT
ARLVGKGHVWIPLNRGTVIEAYHAPAFESNILSVGVLSVEFMVMFTSTIR
PFNGCFIMDPNRNSEIIWETEINQGLFVMDLADNDKQVMVVNANTRTLPS
LSTLCLTFNVPSWSR*
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mRNA from alignment at tig00000069_pilon:448385..449996+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5095.t1 ID=Ggra5095.t1|Name=Ggra5095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1612bp|location=Sequence derived from alignment at tig00000069_pilon:448385..449996+ (Gracilaria gracilis GNS1m male)
atgtcgggcacaaatgagggtctccttggcaggcttccaaagctcaaggt
ccccaccgactacattctctggcgtcgtcgtcttctggcgtatctccgca
gagacgacccatttctttccggtcttgacccacgtcctgatgggttcaac
cccacaaaccgggcaatgagatcttggttcgaaaagtcagtcaaagcgaa
gagcaccatcacactctgcctcggtgactctccgcttgctcttgttcgaa
tgtttgtcgatgatgatgacaaaacggccaaagatctctgggatgaactg
cagcgcgtgtacacaaccaccaacgcgcaagctgtgcagaacatccgcca
tcgtctggacactttggtatacaaggacagcgacgactggaacaagcacg
tcgctaagttcctggaagttgttggggaacttgccaccttcgatgaggaa
ctttcggagaaagacaaagtctccaaactcattcgaagtctccccaactc
ctttggtcccttggccatgatgtcaaacctaaccgatgtcgggttcgact
ccattgtgaacgctgtcgaagctgaagtggctcgtcgcaagaaccctaac
aacccgacatcctccgctccttcgtccacccccactacccaaccgaaagc
caacacggcaaacaagggtggtcgaaagcagcgaaaccggcgtaacaagt
cctcggctaccaagagccgctacgatgacaattgctactactgcggtcgt
cgtggacattacgctcgagattgctacaaacgcaaacgtgaggagtctga
caataatgataaccagcacaactccaacggacggcagcaatctaatcgca
acaacggtggttctcgtcgttcacagtatgggtcccacaaaggaggacaa
cgccaatccaactggaactcagggtttgcaccaaggggggatggaaatga
taatcgtaactcaaatcataactccaaacctcgttcatatgtggtgcaaa
gaaatgatgatccgcctccttcacctggcttcaactgcaatatggccaag
ttcaagagtaagatcgctcttctttctcaaacgaaattggactcagccta
tattgactcaggggcaactcatcacttcttccattcgcggaagtcgttca
ttcgatacgaacgaattgagatcgagactgttcaggcagcctcaggaaca
gctcgtctcgttggcaaaggtcatgtctggatacctttgaaccgtggtac
agtcatcgaggcttaccacgcgcctgcttttgagtcgaacatcctttctg
ttggcgttctcagtgtagagttcatggtgatgttcacttccaccattcgg
ccattcaatggatgtttcatcatggatcctaaccgaaactctgaaatcat
ttgggaaacggaaatcaaccaaggcctcttcgtcatggacctcgctgata
acgacaaacaagtgatggtcgtgaacgcaagtaacagcaatcaggagctg
gctttggaatggcacggtcgaactggtcatcttcacccaagtagatacca
gaaccttgccaagtctttcgactctgtgccttactttcaacgttccatct
tggagtcgttga
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Coding sequence (CDS) from alignment at tig00000069_pilon:448385..449996+

>Ggra5095.t1 ID=Ggra5095.t1|Name=Ggra5095.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000069_pilon:448385..449996+ (Gracilaria gracilis GNS1m male)
atgtcgggcacaaatgagggtctccttggcaggcttccaaagctcaaggt
ccccaccgactacattctctggcgtcgtcgtcttctggcgtatctccgca
gagacgacccatttctttccggtcttgacccacgtcctgatgggttcaac
cccacaaaccgggcaatgagatcttggttcgaaaagtcagtcaaagcgaa
gagcaccatcacactctgcctcggtgactctccgcttgctcttgttcgaa
tgtttgtcgatgatgatgacaaaacggccaaagatctctgggatgaactg
cagcgcgtgtacacaaccaccaacgcgcaagctgtgcagaacatccgcca
tcgtctggacactttggtatacaaggacagcgacgactggaacaagcacg
tcgctaagttcctggaagttgttggggaacttgccaccttcgatgaggaa
ctttcggagaaagacaaagtctccaaactcattcgaagtctccccaactc
ctttggtcccttggccatgatgtcaaacctaaccgatgtcgggttcgact
ccattgtgaacgctgtcgaagctgaagtggctcgtcgcaagaaccctaac
aacccgacatcctccgctccttcgtccacccccactacccaaccgaaagc
caacacggcaaacaagggtggtcgaaagcagcgaaaccggcgtaacaagt
cctcggctaccaagagccgctacgatgacaattgctactactgcggtcgt
cgtggacattacgctcgagattgctacaaacgcaaacgtgaggagtctga
caataatgataaccagcacaactccaacggacggcagcaatctaatcgca
acaacggtggttctcgtcgttcacagtatgggtcccacaaaggaggacaa
cgccaatccaactggaactcagggtttgcaccaaggggggatggaaatga
taatcgtaactcaaatcataactccaaacctcgttcatatgtggtgcaaa
gaaatgatgatccgcctccttcacctggcttcaactgcaatatggccaag
ttcaagagtaagatcgctcttctttctcaaacgaaattggactcagccta
tattgactcaggggcaactcatcacttcttccattcgcggaagtcgttca
ttcgatacgaacgaattgagatcgagactgttcaggcagcctcaggaaca
gctcgtctcgttggcaaaggtcatgtctggatacctttgaaccgtggtac
agtcatcgaggcttaccacgcgcctgcttttgagtcgaacatcctttctg
ttggcgttctcagtgtagagttcatggtgatgttcacttccaccattcgg
ccattcaatggatgtttcatcatggatcctaaccgaaactctgaaatcat
ttgggaaacggaaatcaaccaaggcctcttcgtcatggacctcgctgata
acgacaaacaagtgatggtcgtgaacgcaaataccagaaccttgccaagt
ctttcgactctgtgccttactttcaacgttccatcttggagtcgttga
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