Ggra5213.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5213.t2
Unique NameGgra5213.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:780454..782034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706100.1
Preferred namePOLH
PFAMsIMS,IMS_C
Max annot lvl2759|Eukaryota
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007346,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010224,GO:0010225,GO:0010564,GO:0010948,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051716,GO:0051726,GO:0052858,GO:0060255,GO:0065007,GO:0070013,GO:0070601,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1903047,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
Evalue1.83e-66
EggNOG OGsCOG0389@1|root,KOG2095@2759|Eukaryota
EC2.7.7.7
DescriptionDNA synthesis involved in DNA repair
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5213Ggra5213Gracilaria gracilis GNS1m malegenetig00000069_pilon 780454..782034 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5213.t2.stop1Ggra5213.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 780454..780456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5213.t2.CDS1Ggra5213.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 780454..782034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5213.t2.exon1Ggra5213.t2.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 780454..782034 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5213.t2.start1Ggra5213.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 782032..782034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5213.t2Ggra5213.t2Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 780454..782034 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5213.t2 ID=Ggra5213.t2|Name=Ggra5213.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=527bp
MSALRVILHCDLDCFYAQVERERLQLPQDAALAVVQWSMALAVSYPARKY
GISRGSSVDDIRKAAGDAVTIVPVETIGGGAAELGPNHAQNKDVQATEKV
SLARYRKASSEVFAAMNYVLKGYNATLERASIDEAFIDVTTEVDRRVRLE
NGERLLPTNTEVVGNKLDMLNEVDRRLSYGADIAREIRRQVLEKCNYTVS
AGISCNKLLAKFASAKNKPNKQTILPLTAVSQLMTELPLRKLRGLGGKLG
KQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVER
DATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDART
LTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFK
EGQFSFPISFIGLTATNFFARAERGGSIKEYFASSASNSDSHPGSNERKE
MRSEADREEEHRRLLQERADRILALKLHREESNRGIKKPGVKSSRGAKKS
TGSNRTKVKSGITTVDMFFKAKNGKS*
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spliced messenger RNA

>Ggra5213.t2 ID=Ggra5213.t2|Name=Ggra5213.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000069_pilon:780454..782034- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCATTGAGAGTTATTCTACACTGCGACCTGGATTGCTTTTATGC
TCAAGTGGAGCGGGAACGTCTGCAGCTTCCGCAAGATGCGGCGCTTGCTG
TCGTCCAGTGGTCTATGGCGCTCGCCGTTAGTTATCCAGCTCGAAAGTAC
GGCATTTCGAGGGGCTCCTCGGTAGACGACATTCGAAAGGCAGCTGGAGA
TGCTGTTACTATTGTCCCGGTTGAGACAATTGGCGGTGGGGCTGCCGAAC
TAGGACCGAATCACGCGCAAAACAAGGATGTGCAAGCCACTGAAAAGGTT
AGTCTGGCGAGATATCGCAAAGCGTCATCTGAAGTCTTCGCAGCCATGAA
CTACGTGTTGAAAGGTTACAATGCCACACTTGAACGAGCAAGTATAGATG
AAGCGTTCATCGACGTCACCACTGAGGTCGATCGACGTGTGAGATTAGAA
AACGGGGAGCGACTACTACCAACTAATACGGAAGTTGTTGGGAACAAATT
GGACATGTTAAACGAGGTTGATAGGCGCCTCTCTTATGGTGCTGATATTG
CTAGAGAAATACGAAGGCAGGTTTTAGAAAAGTGCAACTATACCGTTAGT
GCTGGAATAAGTTGCAACAAACTTTTGGCAAAGTTTGCTTCTGCCAAGAA
CAAACCTAACAAGCAAACCATTCTTCCTTTAACTGCCGTTTCTCAGCTAA
TGACTGAACTACCTTTGAGGAAGCTGCGAGGGCTTGGTGGAAAGCTTGGG
AAACAGATAGAAGATCTTGGTATCCACACGGCTGGGGAAGCAACAAAGCT
TGACATGGAAACACTCGAAAAAAAGCTAGGAAACCAAAAGAGTGCACAGT
TTGTTTATAAGTGTGTACGTGGAATTGATGAATCAGAAGTTGTGGAACGA
GATGCAACGAAGAGTTTATTAGCAGCCAAGAACTTCAAGCCAGAGAATTC
GCTGGAAACTGTAGAAAAGCAATGGCTTCCCTTGCTGTCTGAGGAGCTCA
GCAATAGGATGAATGCTGATAGTGAGACCAACAATCGAGATGCAAGGACC
TTGACAGTTAGCTTTCGAGTGAAAATGGCTGGAGGACATGTGAGACTGAA
CGCCTCTCGTTCAACTGCGATGCCGCAAGCCAGCTTTCAAAAGCGAGTTG
ACGCTATTATTGCAGCGGCACTGTCGGTGCTCAAGAATGCAATGTTTAAG
GAAGGGCAGTTTTCCTTCCCAATTAGTTTTATTGGCCTTACCGCCACAAA
CTTCTTCGCAAGAGCTGAACGAGGGGGGAGCATAAAAGAATACTTTGCCA
GCTCTGCTTCGAACAGCGATTCACATCCAGGATCAAATGAAAGAAAGGAA
ATGAGGTCTGAGGCAGATCGAGAAGAAGAACATCGTAGGCTACTTCAGGA
ACGTGCAGATCGCATTCTTGCATTGAAATTGCACCGCGAAGAAAGTAATA
GAGGTATCAAGAAGCCGGGAGTGAAAAGCTCCAGAGGTGCGAAGAAAAGT
ACTGGATCCAATAGAACCAAAGTCAAGAGCGGAATAACGACAGTCGATAT
GTTCTTCAAAGCAAAGAACGGGAAATCTTAA
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protein sequence of Ggra5213.t2

>Ggra5213.t2 ID=Ggra5213.t2|Name=Ggra5213.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=527bp
MSALRVILHCDLDCFYAQVERERLQLPQDAALAVVQWSMALAVSYPARKY
GISRGSSVDDIRKAAGDAVTIVPVETIGGGAAELGPNHAQNKDVQATEKV
SLARYRKASSEVFAAMNYVLKGYNATLERASIDEAFIDVTTEVDRRVRLE
NGERLLPTNTEVVGNKLDMLNEVDRRLSYGADIAREIRRQVLEKCNYTVS
AGISCNKLLAKFASAKNKPNKQTILPLTAVSQLMTELPLRKLRGLGGKLG
KQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVER
DATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDART
LTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFK
EGQFSFPISFIGLTATNFFARAERGGSIKEYFASSASNSDSHPGSNERKE
MRSEADREEEHRRLLQERADRILALKLHREESNRGIKKPGVKSSRGAKKS
TGSNRTKVKSGITTVDMFFKAKNGKS*
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mRNA from alignment at tig00000069_pilon:780454..782034-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5213.t2 ID=Ggra5213.t2|Name=Ggra5213.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000069_pilon:780454..782034- (Gracilaria gracilis GNS1m male)
ATGTCGGCATTGAGAGTTATTCTACACTGCGACCTGGATTGCTTTTATGC
TCAAGTGGAGCGGGAACGTCTGCAGCTTCCGCAAGATGCGGCGCTTGCTG
TCGTCCAGTGGTCTATGGCGCTCGCCGTTAGTTATCCAGCTCGAAAGTAC
GGCATTTCGAGGGGCTCCTCGGTAGACGACATTCGAAAGGCAGCTGGAGA
TGCTGTTACTATTGTCCCGGTTGAGACAATTGGCGGTGGGGCTGCCGAAC
TAGGACCGAATCACGCGCAAAACAAGGATGTGCAAGCCACTGAAAAGGTT
AGTCTGGCGAGATATCGCAAAGCGTCATCTGAAGTCTTCGCAGCCATGAA
CTACGTGTTGAAAGGTTACAATGCCACACTTGAACGAGCAAGTATAGATG
AAGCGTTCATCGACGTCACCACTGAGGTCGATCGACGTGTGAGATTAGAA
AACGGGGAGCGACTACTACCAACTAATACGGAAGTTGTTGGGAACAAATT
GGACATGTTAAACGAGGTTGATAGGCGCCTCTCTTATGGTGCTGATATTG
CTAGAGAAATACGAAGGCAGGTTTTAGAAAAGTGCAACTATACCGTTAGT
GCTGGAATAAGTTGCAACAAACTTTTGGCAAAGTTTGCTTCTGCCAAGAA
CAAACCTAACAAGCAAACCATTCTTCCTTTAACTGCCGTTTCTCAGCTAA
TGACTGAACTACCTTTGAGGAAGCTGCGAGGGCTTGGTGGAAAGCTTGGG
AAACAGATAGAAGATCTTGGTATCCACACGGCTGGGGAAGCAACAAAGCT
TGACATGGAAACACTCGAAAAAAAGCTAGGAAACCAAAAGAGTGCACAGT
TTGTTTATAAGTGTGTACGTGGAATTGATGAATCAGAAGTTGTGGAACGA
GATGCAACGAAGAGTTTATTAGCAGCCAAGAACTTCAAGCCAGAGAATTC
GCTGGAAACTGTAGAAAAGCAATGGCTTCCCTTGCTGTCTGAGGAGCTCA
GCAATAGGATGAATGCTGATAGTGAGACCAACAATCGAGATGCAAGGACC
TTGACAGTTAGCTTTCGAGTGAAAATGGCTGGAGGACATGTGAGACTGAA
CGCCTCTCGTTCAACTGCGATGCCGCAAGCCAGCTTTCAAAAGCGAGTTG
ACGCTATTATTGCAGCGGCACTGTCGGTGCTCAAGAATGCAATGTTTAAG
GAAGGGCAGTTTTCCTTCCCAATTAGTTTTATTGGCCTTACCGCCACAAA
CTTCTTCGCAAGAGCTGAACGAGGGGGGAGCATAAAAGAATACTTTGCCA
GCTCTGCTTCGAACAGCGATTCACATCCAGGATCAAATGAAAGAAAGGAA
ATGAGGTCTGAGGCAGATCGAGAAGAAGAACATCGTAGGCTACTTCAGGA
ACGTGCAGATCGCATTCTTGCATTGAAATTGCACCGCGAAGAAAGTAATA
GAGGTATCAAGAAGCCGGGAGTGAAAAGCTCCAGAGGTGCGAAGAAAAGT
ACTGGATCCAATAGAACCAAAGTCAAGAGCGGAATAACGACAGTCGATAT
GTTCTTCAAAGCAAAGAACGGGAAATCTTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:780454..782034-

>Ggra5213.t2 ID=Ggra5213.t2|Name=Ggra5213.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1581bp|location=Sequence derived from alignment at tig00000069_pilon:780454..782034- (Gracilaria gracilis GNS1m male)
ATGTCGGCATTGAGAGTTATTCTACACTGCGACCTGGATTGCTTTTATGC
TCAAGTGGAGCGGGAACGTCTGCAGCTTCCGCAAGATGCGGCGCTTGCTG
TCGTCCAGTGGTCTATGGCGCTCGCCGTTAGTTATCCAGCTCGAAAGTAC
GGCATTTCGAGGGGCTCCTCGGTAGACGACATTCGAAAGGCAGCTGGAGA
TGCTGTTACTATTGTCCCGGTTGAGACAATTGGCGGTGGGGCTGCCGAAC
TAGGACCGAATCACGCGCAAAACAAGGATGTGCAAGCCACTGAAAAGGTT
AGTCTGGCGAGATATCGCAAAGCGTCATCTGAAGTCTTCGCAGCCATGAA
CTACGTGTTGAAAGGTTACAATGCCACACTTGAACGAGCAAGTATAGATG
AAGCGTTCATCGACGTCACCACTGAGGTCGATCGACGTGTGAGATTAGAA
AACGGGGAGCGACTACTACCAACTAATACGGAAGTTGTTGGGAACAAATT
GGACATGTTAAACGAGGTTGATAGGCGCCTCTCTTATGGTGCTGATATTG
CTAGAGAAATACGAAGGCAGGTTTTAGAAAAGTGCAACTATACCGTTAGT
GCTGGAATAAGTTGCAACAAACTTTTGGCAAAGTTTGCTTCTGCCAAGAA
CAAACCTAACAAGCAAACCATTCTTCCTTTAACTGCCGTTTCTCAGCTAA
TGACTGAACTACCTTTGAGGAAGCTGCGAGGGCTTGGTGGAAAGCTTGGG
AAACAGATAGAAGATCTTGGTATCCACACGGCTGGGGAAGCAACAAAGCT
TGACATGGAAACACTCGAAAAAAAGCTAGGAAACCAAAAGAGTGCACAGT
TTGTTTATAAGTGTGTACGTGGAATTGATGAATCAGAAGTTGTGGAACGA
GATGCAACGAAGAGTTTATTAGCAGCCAAGAACTTCAAGCCAGAGAATTC
GCTGGAAACTGTAGAAAAGCAATGGCTTCCCTTGCTGTCTGAGGAGCTCA
GCAATAGGATGAATGCTGATAGTGAGACCAACAATCGAGATGCAAGGACC
TTGACAGTTAGCTTTCGAGTGAAAATGGCTGGAGGACATGTGAGACTGAA
CGCCTCTCGTTCAACTGCGATGCCGCAAGCCAGCTTTCAAAAGCGAGTTG
ACGCTATTATTGCAGCGGCACTGTCGGTGCTCAAGAATGCAATGTTTAAG
GAAGGGCAGTTTTCCTTCCCAATTAGTTTTATTGGCCTTACCGCCACAAA
CTTCTTCGCAAGAGCTGAACGAGGGGGGAGCATAAAAGAATACTTTGCCA
GCTCTGCTTCGAACAGCGATTCACATCCAGGATCAAATGAAAGAAAGGAA
ATGAGGTCTGAGGCAGATCGAGAAGAAGAACATCGTAGGCTACTTCAGGA
ACGTGCAGATCGCATTCTTGCATTGAAATTGCACCGCGAAGAAAGTAATA
GAGGTATCAAGAAGCCGGGAGTGAAAAGCTCCAGAGGTGCGAAGAAAAGT
ACTGGATCCAATAGAACCAAAGTCAAGAGCGGAATAACGACAGTCGATAT
GTTCTTCAAAGCAAAGAACGGGAAATCTTAA
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