Ggra5142.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5142.t1
Unique NameGgra5142.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:581380..582072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5142Ggra5142Gracilaria gracilis GNS1m malegenetig00000069_pilon 581380..582072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5142.t1.start1Ggra5142.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 581380..581382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5142.t1.CDS1Ggra5142.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 581380..582072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5142.t1.exon1Ggra5142.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 581380..582072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5142.t1.stop1Ggra5142.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 582070..582072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5142.t1Ggra5142.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 581380..582072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5142.t1 ID=Ggra5142.t1|Name=Ggra5142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MGIQCKTTETEGCRSQKSWLTPLIRMGKKVRDIVGKISAKLDCFRRRVDT
ESCVGSAGTGSSSTTEETTTPLCHEILDICEKKLMCNKKSFESDSKLETE
SGTDTLSVALSGSTEELRSEAGSIETIDDTPRRVRSKVESMGDLSVIGKG
IVVRTLAKLRSTGSSIFNEPCSASCQKVSADVSQPTRETAPPDSQGTKSF
VSDAAVTCAVNSIQKVSAVTSGPETLTTEP*
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spliced messenger RNA

>Ggra5142.t1 ID=Ggra5142.t1|Name=Ggra5142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000069_pilon:581380..582072+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATCCAGTGCAAGACAACGGAGACTGAAGGCTGCAGGTCCCAGAA
GAGCTGGTTGACTCCACTGATTCGTATGGGCAAGAAAGTGCGGGATATCG
TTGGAAAGATATCCGCCAAACTAGATTGCTTTCGGAGGCGCGTTGATACT
GAAAGCTGTGTGGGTTCTGCGGGTACTGGTAGTTCTTCAACGACCGAAGA
GACTACTACGCCTCTTTGTCACGAGATACTGGACATATGCGAGAAGAAGT
TGATGTGCAACAAAAAGTCCTTCGAAAGTGATTCAAAACTGGAAACAGAA
TCAGGGACAGATACACTTTCAGTTGCGTTGAGTGGCAGCACGGAGGAGCT
ACGAAGCGAAGCGGGGTCAATAGAAACCATAGACGACACTCCTCGCCGAG
TGAGGAGCAAAGTGGAAAGCATGGGTGACCTCTCGGTCATTGGAAAAGGA
ATTGTGGTCAGAACTTTGGCCAAACTGCGTTCAACAGGAAGCTCTATCTT
CAACGAGCCCTGTTCGGCATCATGCCAAAAAGTATCTGCAGATGTGTCCC
AACCTACAAGGGAAACCGCTCCGCCTGACAGCCAAGGTACCAAGTCGTTC
GTCTCTGATGCTGCTGTCACCTGTGCAGTTAATTCAATCCAGAAAGTCAG
TGCAGTGACTTCAGGACCAGAGACGTTGACGACGGAGCCATAA
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protein sequence of Ggra5142.t1

>Ggra5142.t1 ID=Ggra5142.t1|Name=Ggra5142.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MGIQCKTTETEGCRSQKSWLTPLIRMGKKVRDIVGKISAKLDCFRRRVDT
ESCVGSAGTGSSSTTEETTTPLCHEILDICEKKLMCNKKSFESDSKLETE
SGTDTLSVALSGSTEELRSEAGSIETIDDTPRRVRSKVESMGDLSVIGKG
IVVRTLAKLRSTGSSIFNEPCSASCQKVSADVSQPTRETAPPDSQGTKSF
VSDAAVTCAVNSIQKVSAVTSGPETLTTEP*
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mRNA from alignment at tig00000069_pilon:581380..582072+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5142.t1 ID=Ggra5142.t1|Name=Ggra5142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000069_pilon:581380..582072+ (Gracilaria gracilis GNS1m male)
ATGGGTATCCAGTGCAAGACAACGGAGACTGAAGGCTGCAGGTCCCAGAA
GAGCTGGTTGACTCCACTGATTCGTATGGGCAAGAAAGTGCGGGATATCG
TTGGAAAGATATCCGCCAAACTAGATTGCTTTCGGAGGCGCGTTGATACT
GAAAGCTGTGTGGGTTCTGCGGGTACTGGTAGTTCTTCAACGACCGAAGA
GACTACTACGCCTCTTTGTCACGAGATACTGGACATATGCGAGAAGAAGT
TGATGTGCAACAAAAAGTCCTTCGAAAGTGATTCAAAACTGGAAACAGAA
TCAGGGACAGATACACTTTCAGTTGCGTTGAGTGGCAGCACGGAGGAGCT
ACGAAGCGAAGCGGGGTCAATAGAAACCATAGACGACACTCCTCGCCGAG
TGAGGAGCAAAGTGGAAAGCATGGGTGACCTCTCGGTCATTGGAAAAGGA
ATTGTGGTCAGAACTTTGGCCAAACTGCGTTCAACAGGAAGCTCTATCTT
CAACGAGCCCTGTTCGGCATCATGCCAAAAAGTATCTGCAGATGTGTCCC
AACCTACAAGGGAAACCGCTCCGCCTGACAGCCAAGGTACCAAGTCGTTC
GTCTCTGATGCTGCTGTCACCTGTGCAGTTAATTCAATCCAGAAAGTCAG
TGCAGTGACTTCAGGACCAGAGACGTTGACGACGGAGCCATAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:581380..582072+

>Ggra5142.t1 ID=Ggra5142.t1|Name=Ggra5142.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000069_pilon:581380..582072+ (Gracilaria gracilis GNS1m male)
ATGGGTATCCAGTGCAAGACAACGGAGACTGAAGGCTGCAGGTCCCAGAA
GAGCTGGTTGACTCCACTGATTCGTATGGGCAAGAAAGTGCGGGATATCG
TTGGAAAGATATCCGCCAAACTAGATTGCTTTCGGAGGCGCGTTGATACT
GAAAGCTGTGTGGGTTCTGCGGGTACTGGTAGTTCTTCAACGACCGAAGA
GACTACTACGCCTCTTTGTCACGAGATACTGGACATATGCGAGAAGAAGT
TGATGTGCAACAAAAAGTCCTTCGAAAGTGATTCAAAACTGGAAACAGAA
TCAGGGACAGATACACTTTCAGTTGCGTTGAGTGGCAGCACGGAGGAGCT
ACGAAGCGAAGCGGGGTCAATAGAAACCATAGACGACACTCCTCGCCGAG
TGAGGAGCAAAGTGGAAAGCATGGGTGACCTCTCGGTCATTGGAAAAGGA
ATTGTGGTCAGAACTTTGGCCAAACTGCGTTCAACAGGAAGCTCTATCTT
CAACGAGCCCTGTTCGGCATCATGCCAAAAAGTATCTGCAGATGTGTCCC
AACCTACAAGGGAAACCGCTCCGCCTGACAGCCAAGGTACCAAGTCGTTC
GTCTCTGATGCTGCTGTCACCTGTGCAGTTAATTCAATCCAGAAAGTCAG
TGCAGTGACTTCAGGACCAGAGACGTTGACGACGGAGCCATAA
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