Ggra5063.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5063.t1
Unique NameGgra5063.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:372012..372902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709184.1
Preferred namePOLR3F
PFAMsRNA_pol_Rpc34
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03025
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006359,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue2.95e-51
EggNOG OGsCOG5111@1|root,KOG3233@2759|Eukaryota
Descriptiontranscription by RNA polymerase III
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5063Ggra5063Gracilaria gracilis GNS1m malegenetig00000069_pilon 372012..372902 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5063.t1.start1Ggra5063.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 372012..372014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5063.t1.CDS1Ggra5063.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 372012..372902 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5063.t1.exon1Ggra5063.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 372012..372902 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5063.t1.stop1Ggra5063.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 372900..372902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5063.t1Ggra5063.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 372012..372902 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5063.t1 ID=Ggra5063.t1|Name=Ggra5063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MPDPALRALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELL
RNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIE
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKV
YIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDS
VTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRIVT
NTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQAADW*
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spliced messenger RNA

>Ggra5063.t1 ID=Ggra5063.t1|Name=Ggra5063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000069_pilon:372012..372902+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGACCCAGCATTACGGGCTTTGCAGACCATGATTCTTCGAATATG
TCAATCTAGCCCTGATGGTTTAACAGACGCCGAAATAGTCCAGCATCTAG
ATAAGAATGTCAAGCCTAAACATCGTCTCGACACATACAACGAGTTGCTT
CGGAACGGAAGGTTGAAGCTTTTAAAGAAGTCCGTAGGTGAAGGGGCGCA
GAAGAAGGATGTCGTCGTCTACCAATGGGTGAGCCTCAAAGATGCTGAGA
AATTCCGCGGACTTGATGCTGCGGAGAGAATGGTATACGATATGATAGAG
CGCTCTGGTCAAAATGGAGTTACAAAGCGAGATATGAAGTTCAGGACAAA
CATTCAGAACCCTTCTGAATTAAAACAAATAGTAGAACGACTGATTGCAC
GGGGACTTGTAAAGGAGATCAAATCTGTTCAGGGTACAAACAAAAAGGTA
TACATTGCATCTGATGTGGAACCCTCAACAGCTCACACCGGTGGTCCTTG
GTACAATGACGAGCAGGAGTTCGACACAGTTTTCATCGATACTATTTATG
CTCAGGTTCTTGGATACATGTTTTCGATGGAGTATGTCTCAGTTGACAGC
GTCACGGAATATGTAGCAGATTTGAATATATCAAATGAAGCCCTTTCAAA
GAGTGATATACAACAGTTGATGATGACTATGCTGTATGATTCCGTTATCG
AAGAGTGTAGTGGAAGAAATGATGGGGGAGAATACTTCAGAATAGTTACA
AACACACCTGCTGTGAACCACCTCTCGTCTATCCCTTGCGGTTCATGTCC
AGTCTTTCACGATTGCAGCCCTGACGGTGTTATTTCTCCAAAGACATGTG
TATATATGAAAGAGTGGCTTCAACAGGCAGCTGACTGGTGA
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protein sequence of Ggra5063.t1

>Ggra5063.t1 ID=Ggra5063.t1|Name=Ggra5063.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MPDPALRALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELL
RNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIE
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKV
YIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDS
VTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRIVT
NTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQAADW*
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mRNA from alignment at tig00000069_pilon:372012..372902+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5063.t1 ID=Ggra5063.t1|Name=Ggra5063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000069_pilon:372012..372902+ (Gracilaria gracilis GNS1m male)
ATGCCAGACCCAGCATTACGGGCTTTGCAGACCATGATTCTTCGAATATG
TCAATCTAGCCCTGATGGTTTAACAGACGCCGAAATAGTCCAGCATCTAG
ATAAGAATGTCAAGCCTAAACATCGTCTCGACACATACAACGAGTTGCTT
CGGAACGGAAGGTTGAAGCTTTTAAAGAAGTCCGTAGGTGAAGGGGCGCA
GAAGAAGGATGTCGTCGTCTACCAATGGGTGAGCCTCAAAGATGCTGAGA
AATTCCGCGGACTTGATGCTGCGGAGAGAATGGTATACGATATGATAGAG
CGCTCTGGTCAAAATGGAGTTACAAAGCGAGATATGAAGTTCAGGACAAA
CATTCAGAACCCTTCTGAATTAAAACAAATAGTAGAACGACTGATTGCAC
GGGGACTTGTAAAGGAGATCAAATCTGTTCAGGGTACAAACAAAAAGGTA
TACATTGCATCTGATGTGGAACCCTCAACAGCTCACACCGGTGGTCCTTG
GTACAATGACGAGCAGGAGTTCGACACAGTTTTCATCGATACTATTTATG
CTCAGGTTCTTGGATACATGTTTTCGATGGAGTATGTCTCAGTTGACAGC
GTCACGGAATATGTAGCAGATTTGAATATATCAAATGAAGCCCTTTCAAA
GAGTGATATACAACAGTTGATGATGACTATGCTGTATGATTCCGTTATCG
AAGAGTGTAGTGGAAGAAATGATGGGGGAGAATACTTCAGAATAGTTACA
AACACACCTGCTGTGAACCACCTCTCGTCTATCCCTTGCGGTTCATGTCC
AGTCTTTCACGATTGCAGCCCTGACGGTGTTATTTCTCCAAAGACATGTG
TATATATGAAAGAGTGGCTTCAACAGGCAGCTGACTGGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:372012..372902+

>Ggra5063.t1 ID=Ggra5063.t1|Name=Ggra5063.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000069_pilon:372012..372902+ (Gracilaria gracilis GNS1m male)
ATGCCAGACCCAGCATTACGGGCTTTGCAGACCATGATTCTTCGAATATG
TCAATCTAGCCCTGATGGTTTAACAGACGCCGAAATAGTCCAGCATCTAG
ATAAGAATGTCAAGCCTAAACATCGTCTCGACACATACAACGAGTTGCTT
CGGAACGGAAGGTTGAAGCTTTTAAAGAAGTCCGTAGGTGAAGGGGCGCA
GAAGAAGGATGTCGTCGTCTACCAATGGGTGAGCCTCAAAGATGCTGAGA
AATTCCGCGGACTTGATGCTGCGGAGAGAATGGTATACGATATGATAGAG
CGCTCTGGTCAAAATGGAGTTACAAAGCGAGATATGAAGTTCAGGACAAA
CATTCAGAACCCTTCTGAATTAAAACAAATAGTAGAACGACTGATTGCAC
GGGGACTTGTAAAGGAGATCAAATCTGTTCAGGGTACAAACAAAAAGGTA
TACATTGCATCTGATGTGGAACCCTCAACAGCTCACACCGGTGGTCCTTG
GTACAATGACGAGCAGGAGTTCGACACAGTTTTCATCGATACTATTTATG
CTCAGGTTCTTGGATACATGTTTTCGATGGAGTATGTCTCAGTTGACAGC
GTCACGGAATATGTAGCAGATTTGAATATATCAAATGAAGCCCTTTCAAA
GAGTGATATACAACAGTTGATGATGACTATGCTGTATGATTCCGTTATCG
AAGAGTGTAGTGGAAGAAATGATGGGGGAGAATACTTCAGAATAGTTACA
AACACACCTGCTGTGAACCACCTCTCGTCTATCCCTTGCGGTTCATGTCC
AGTCTTTCACGATTGCAGCCCTGACGGTGTTATTTCTCCAAAGACATGTG
TATATATGAAAGAGTGGCTTCAACAGGCAGCTGACTGGTGA
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